BAC Information

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BAC

Clone NameB6Ng01-299C03
Chromosome13 (Build37)
Map Location 72,099,280 - 72,292,273
singlet/doubletdoublet
Overlap geneIrx1
Upstream geneLOC627230, LOC100042360
Downstream geneLOC100042828, LOC100042832, LOC100042836, Irx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299C03.bB6Ng01-299C03.g
ACCGA094061GA094062
length1,1081,145
definitionB6Ng01-299C03.b B6Ng01-299C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,099,280 - 72,100,392)(72,291,142 - 72,292,273)
sequence
tttgtgcctcgccattgtaaaatgtacatttcgtttttcaagattatttt
agttgtaatcgtaaagtagaaattcggcctcgtctctgctgggaattgtt
tttgaaagggcaccttgtaaatctctcatcgctcccggggcatattggct
gtccgaacaaaatgggggttgatcttcctggttgggaagcatccgaaagg
caactggctggccggaccactgagaaataggctttctttctaaactacaa
gaaaagttcggaaaatcgcgctagccgctttgcttctgcacagttggagg
ccaaccttttaaaggagtctggtctggtctgttttgccagagactggata
attcagggttcttggaaattgctctatccagaagatagcagggcagcagg
gggctgccttccaaaaaccagtgcccgcctcgcaatttgctagcggcctc
aagtttaagcagcccgacctttccgttaaaccaaggaaaagtgatcattc
ggaaggacagacaggccaatactcctgtggagaattaaatttaaacacac
acccccatctgacacccactgggacaggagatcggagagcaccatttatt
ttaagctctgggacactgttcctttaactctcccttatgtaacacgggaa
gaaaagtgcttttctttcggctcaaatgaaaagtttggcaacttacgaaa
gtaaaggcaaacaccgtttcggaagccagaatttatgtcaacttagtatt
tcttagccccgattcctatggtccctacacactccattaagagacctctc
tgctctgctgatgtctattgtttgttgggatgtttttgatcgactccgct
aggtttaaccggttccttttggcaaagtctagggcaactatctctgctct
gccaaagagggagaaggaaggtcttctgggcccaagggaaagctcttgcg
gcgctcagcgaggccggccgccaggttagggcagtgtagtaagcggccct
ggcctgaagggggcccggcggctgccctgttcgccactggagggctggcg
atttgccgggaacctctcagagctgccgcggtctcagcttctctggaggc
tttctctc

gaattcttaattgtataaattgcaatgaggagtggacaagtgatagggaa
aattgggatttttgcatccttcagagaactcaaatatgtaaacagccagt
catgtaggaggaagtgtgtgtgcctcttattgaaaagggaaaaataattt
agagagatgagaggatcacaggagggaaagctgatattcttctgctataa
cggatagccccaagttgtagaggccattatttcatgcattttcagagcaa
atgaacttgacagatggccgtgtcacccaaacccccacctaccaacttga
ttatgcagaaaacaatacaatagaaaagaaatcattactgaaggaacctg
gttagtccacagagggctggggaatgcagaagaacaaaattacagtggtg
gaattgaacagcaagaatgcatttaacataaagtgggttactgcaaggca
atcagtcatggctaaagctattgtctgggcttgcttgcatggtatatgaa
gtaatccgtcatctcccacagaatttgtgcttagtttataggcgagaact
acaaaggttgcaccaggacatgtttgggtagtcttaagtgcctcaagtgt
gggccccagaagtgaaacagtgagctctttaggatgtcccagtgtctcct
gtgtcacaaggtgtttctatctgacatgtacatgactgtgctgcttggga
gagtgcaggaatcagctccagcctgtgtgcagccaacacacatgtcaaag
taccgatggaagaaatgaggtcagggtcagggcttcccaaatgttaaaaa
aaaaaaaaaaaaagacttctgtagatttaaggtgatcgtgttttctgtgc
tagtttatatttctttgagttgttgactataaatacacaaggattgtcac
tgagttaacaatcacaggcaaatgggttcaattgtgttatattatacaaa
gagtgatattacttagtgtctaacagaaagcctattggaggagctgttgg
cagttcgtgactaccaaggaaggaagcccttttttttttttcttaagggc
atgacctacctgcctaggacttatgttccagtagagaaacccatccactg
gactttttaagaacctcctttctttcccctgatcttcagaaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_72099280_72100392
seq2: B6Ng01-299C03.b_50_1157

seq1  TTTGTGCCTCGCCATTGTAAAATGTACATTTCGTTTTTCAAGATTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCCTCGCCATTGTAAAATGTACATTTCGTTTTTCAAGATTATTTT  50

seq1  AGTTGTAATCGTAAAGTAGAAATTCGGCCTCGTCTCTGCTGGGAATTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAATCGTAAAGTAGAAATTCGGCCTCGTCTCTGCTGGGAATTGTT  100

seq1  TTTGAAAGGGCACCTTGTAAATCTCTCATCGCTCCCGGGGCATATTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGGGCACCTTGTAAATCTCTCATCGCTCCCGGGGCATATTGGCT  150

seq1  GTCCGAACAAAATGGGGGTTGATCTTCCTGGTTGGGAAGCATCCGAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGAACAAAATGGGGGTTGATCTTCCTGGTTGGGAAGCATCCGAAAGG  200

seq1  CAACTGGCTGGCCGGACCACTGAGAAATAGGCTTTCTTTCTAAACTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGCTGGCCGGACCACTGAGAAATAGGCTTTCTTTCTAAACTACAA  250

seq1  GAAAAGTTCGGAAAATCGCGCTAGCCGCTTTGCTTCTGCACAGTTGGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTCGGAAAATCGCGCTAGCCGCTTTGCTTCTGCACAGTTGGAGG  300

seq1  CCAACCTTTTAAAGGAGTCTGGTCTGGTCTGTTTTGCCAGAGACTGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTTTTAAAGGAGTCTGGTCTGGTCTGTTTTGCCAGAGACTGGATA  350

seq1  ATTCAGGGTTCTTGGAAATTGCTCTATCCAGAAGATAGCAGGGCAGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGGTTCTTGGAAATTGCTCTATCCAGAAGATAGCAGGGCAGCAGG  400

seq1  GGGCTGCCTTCCAAAAACCAGTGCCCGCCTCGCAATTTGCTAGCGGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCCTTCCAAAAACCAGTGCCCGCCTCGCAATTTGCTAGCGGCCTC  450

seq1  AAGTTTAAGCAGCCCGACCTTTCCGTTAAACCAAGGAAAAGTGATCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAAGCAGCCCGACCTTTCCGTTAAACCAAGGAAAAGTGATCATTC  500

seq1  GGAAGGACAGACAGGCCAATACTCCTGTGGAGAATTAAATTTAAACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGACAGACAGGCCAATACTCCTGTGGAGAATTAAATTTAAACACAC  550

seq1  ACCCCCATCTGACACCCACTGGGACAGGAGATCGGAGAGCACCATTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCATCTGACACCCACTGGGACAGGAGATCGGAGAGCACCATTTATT  600

seq1  TTAAGCTCTGGGACACTGTTCCTTTAACTCTCCCTTATGTAACACGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTCTGGGACACTGTTCCTTTAACTCTCCCTTATGTAACACGGGAA  650

seq1  GAAAAGTGCTTTTCTTTCGGCTCAAATGAAAAGTTTGGCAACTTACGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGCTTTTCTTTCGGCTCAAATGAAAAGTTTGGCAACTTACGAAA  700

seq1  GTAAAGGCAAACACCGTTTCGGAAGCCAGAATTTATGTCAACTTAGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGCAAACACCGTTTCGGAAGCCAGAATTTATGTCAACTTAGTATT  750

seq1  TCTTAGCCCCGATTCCTATGGTCCCTACACACTCCATTAAGAGACCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCCCCGATTCCTATGGTCCCTACACACTCCATTAAGAGACCTCTC  800

seq1  TGCTCTGCTGATGTCTATTGTTTGTTGGGATGTTTTTGATCGACTCCGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCTGATGTCTATTGTTTGTTGGGATGTTTTTGATCGACTCCGCT  850

seq1  AGGTTTAACCGGTTCCTTTTGGCAAAGTCTAGGGCAACTATCTCTGCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAACCGGTTCCTTTTGGCAAAGTCTAGGGCAACTATCTCTGCTCT  900

seq1  GCCAAAGAGGGAGAAGGAAGGTCTTCTGGGCCCAAGGGAAAGCTCTTGCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGAGGGAGAAGGAAGGTCTTCTGGGCCCAAGGGAAAGCTCTTGCG  950

seq1  GCGCTCAGGCGAGGCCGGCCGCCAGGTTAGGGCAGTGTTAGTAAAGCGGC  1000
      ||||||| ||||||||||||||||||||||||||||| |||| |||||||
seq2  GCGCTCA-GCGAGGCCGGCCGCCAGGTTAGGGCAGTG-TAGT-AAGCGGC  997

seq1  CCTGG-CTG-AGGGGGCCCGGCGGGCCTGCCCTG-TCG-CACTGGAGGAG  1046
      ||||| ||| ||||||||||||||  |||||||| ||| ||||||||  |
seq2  CCTGGCCTGAAGGGGGCCCGGCGG--CTGCCCTGTTCGCCACTGGAG--G  1043

seq1  CCTGGCGGTTTTGCCCGGGACCTC-CAGAGCCTGCCGCGGTCTCAGGCCT  1095
       ||||| | |||||| || ||||| ||||| |||||||||||||||  ||
seq2  GCTGGC-GATTTGCCGGGAACCTCTCAGAG-CTGCCGCGGTCTCAG--CT  1089

seq1  TCTCTGGAGGC-TTCTCTC  1113
      ||||||||||| |||||||
seq2  TCTCTGGAGGCTTTCTCTC  1108


seq1: chr13_72291142_72292273
seq2: B6Ng01-299C03.g_66_1210 (reverse)

seq1  AGTTTTCTGGAAGGAAACAGGGG---GAAAGAAGAGTTCTTAAAAAGT-C  46
      |||||||| ||||  | ||||||   ||||| || ||||||||||||| |
seq2  AGTTTTCT-GAAG--ATCAGGGGAAAGAAAGGAG-GTTCTTAAAAAGTCC  46

seq1  AGT-GATGG--TTCTCTACTGGGACAT-AGTCCTA-GCA-GTA-GTCATG  89
      ||| |||||  ||||||||||| |||| ||||||| ||| ||| ||||||
seq2  AGTGGATGGGTTTCTCTACTGGAACATAAGTCCTAGGCAGGTAGGTCATG  96

seq1  CCCCTAA-AGAAAAAAAAAAAGGCTTCCTTCCTTGGTAGTCACGAACTGC  138
      ||| ||| | |||||||||| |||||||||||||||||||||||||||||
seq2  CCCTTAAGAAAAAAAAAAAAGGGCTTCCTTCCTTGGTAGTCACGAACTGC  146

seq1  CAACAGCTCCTCCAATAGGCTTTCTGTTAGACACTAAGTAATATCACTCT  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTCCTCCAATAGGCTTTCTGTTAGACACTAAGTAATATCACTCT  196

seq1  TTGTATAATATAACACAATTGAA-CCATTTGCCTGTGATTGTTAACTCAG  237
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGTATAATATAACACAATTGAACCCATTTGCCTGTGATTGTTAACTCAG  246

seq1  TGACAATCCTTGTGTATTTATAGTCAACAACTCAA--GAATATAAACTAG  285
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  TGACAATCCTTGTGTATTTATAGTCAACAACTCAAAGAAATATAAACTAG  296

seq1  CACAGAAAACACGATCACCTTAAATCTACAGAAGTC--TTTTTTTTTTTT  333
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  CACAGAAAACACGATCACCTTAAATCTACAGAAGTCTTTTTTTTTTTTTT  346

seq1  TTTTAACATTTGGGAAGCCCTGACCCTGACCTCATTTCTTCCATCGGTAC  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACATTTGGGAAGCCCTGACCCTGACCTCATTTCTTCCATCGGTAC  396

seq1  TTTGACATGTGTGTTGGCTGCACACAGGCTGGAGCTGATTCCTGCACTCT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATGTGTGTTGGCTGCACACAGGCTGGAGCTGATTCCTGCACTCT  446

seq1  CCCAAGCAGCACAGTCATGTACATGTCAGATAGAAACACCTTGTGACACA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCAGCACAGTCATGTACATGTCAGATAGAAACACCTTGTGACACA  496

seq1  GGAGACACTGGGACATCCTAAAGAGCTCACTGTTTCACTTCTGGGGCCCA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACACTGGGACATCCTAAAGAGCTCACTGTTTCACTTCTGGGGCCCA  546

seq1  CACTTGAGGCACTTAAGACTACCCAAACATGTCCTGGTGCAACCTTTGTA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAGGCACTTAAGACTACCCAAACATGTCCTGGTGCAACCTTTGTA  596

seq1  GTTCTCGCCTATAAACTAAGCACAAATTCTGTGGGAGATGACGGATTACT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCGCCTATAAACTAAGCACAAATTCTGTGGGAGATGACGGATTACT  646

seq1  TCATATACCATGCAAGCAAGCCCAGACAATAGCTTTAGCCATGACTGATT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATACCATGCAAGCAAGCCCAGACAATAGCTTTAGCCATGACTGATT  696

seq1  GCCTTGCAGTAACCCACTTTATGTTAAATGCATTCTTGCTGTTCAATTCC  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCAGTAACCCACTTTATGTTAAATGCATTCTTGCTGTTCAATTCC  746

seq1  ACCACTGTAATTTTGTTCTTCTGCATTCCCCAGCCCTCTGTGGACTAACC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTAATTTTGTTCTTCTGCATTCCCCAGCCCTCTGTGGACTAACC  796

seq1  AGGTTCCTTCAGTAATGATTTCTTTTCTATTGTATTGTTTTCTGCATAAT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCTTCAGTAATGATTTCTTTTCTATTGTATTGTTTTCTGCATAAT  846

seq1  CAAGTTGGTAGGTGGGGGTTTGGGTGACACGGCCATCTGTCAAGTTCATT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGGTAGGTGGGGGTTTGGGTGACACGGCCATCTGTCAAGTTCATT  896

seq1  TGCTCTGAAAATGCATGAAATAATGGCCTCTACAACTTGGGGCTATCCGT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGAAAATGCATGAAATAATGGCCTCTACAACTTGGGGCTATCCGT  946

seq1  TATAGCAGAAGAATATCAGCTTTCCCTCCTGTGATCCTCTCATCTCTCTA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAGAAGAATATCAGCTTTCCCTCCTGTGATCCTCTCATCTCTCTA  996

seq1  AATTATTTTTCCCTTTTCAATAAGAGGCACACACACTTCCTCCTACATGA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTTCCCTTTTCAATAAGAGGCACACACACTTCCTCCTACATGA  1046

seq1  CTGGCTGTTTACATATTTGAGTTCTCTGAAGGATGCAAAAATCCCAATTT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTTTACATATTTGAGTTCTCTGAAGGATGCAAAAATCCCAATTT  1096

seq1  TCCCTATCACTTGTCCACTCCTCATTGCAATTTATACAATTAAGAATTC  1132
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATCACTTGTCCACTCCTCATTGCAATTTATACAATTAAGAATTC  1145


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