BAC Information

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BAC

Clone NameB6Ng01-299K10
Chromosome13 (Build37)
Map Location 39,562,582 - 39,715,176
singlet/doubletdoublet
Overlap genenone
Upstream geneBmp6, Txndc5, Muted, Eef1e1, LOC621102, Slc35b3, EG666867, LOC100041779
Downstream geneLOC382747, A230103O09Rik, Ofcc1, LOC666894
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299K10.bB6Ng01-299K10.g
ACCGA094431GA094432
length1,1871,059
definitionB6Ng01-299K10.b B6Ng01-299K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,562,582 - 39,563,757)(39,714,125 - 39,715,176)
sequence
gaattcacttttaaaattctatagaaattaagcatttaaagattgattaa
tttgggttattttatatttaaagtttttcaacctaatctatttattatct
ctaacattttagcatttatttatttgtgtgtgtgtatctgtgtgtgtata
tgtatgtgtgtgttcagtatactactgtgcacattgtgtgcatttggaag
gcggaggataacttgtgggaaccaattctctccttgtcagggaccaaact
ttagttacccagctggagagcaagtgtccttcccctttgagccatccctt
gtctctaaattgaattatttctttgtttgtttgtcagtaagaatttatag
ttttgaatttcacaaatatagacaaaattcccatgttcatttactaagac
cagaattaaaaaaatatttatgtgatataaattttagggattacattttt
actcatttgctaatggctaaagaaatgcccaagactaatttttattcttt
actgatgaaataatattgagagctgaaatttcaacaggttctgacaagcc
tacttcaatttcaggctactactgctaatgaggactgaaaggaacctagg
tagatggagagtcatctacttactgaattactgtggctctctagctctgg
gaaggcaattgatactcagtgaatgtgccattcagctgttcactaaagcc
agtgagttttatcaagtattacccacatcgagatagcaatccttctggct
ttgtggcatcaggaattttcctagactctctaaacatcctcttctatgaa
gcagaaaatgacatctactttcaagaattaaatcaagtggcaggcaaata
ataaagaaaagtctttattgctttcataactaattttatcagtagattag
catattatatgcttgattttattgataaaatccaagtttcaggaattctg
aaattgaatatttttataacttgattttagttttgacctaattcattatg
cattaattcatccaacatgaaacagatataagccctgatcagacataggt
gatgtcataattcagcctaaagccatatagcttgtctggtgttgccttgg
tcgctagcaatgagttagaccacaatcacctcaataaaacagtaggcagt
caaggggtgttgccacacatgtgaggagtgatctcca
gaattcagtctctcatgtttggtcagttaggttttcaacagaatccatag
gagtttgactttagctttgtgatttctcctctaggctccacagtcaggcg
cactgcaaattgatgtccatttgtgtagtctgtcctttaccacagacttt
taagggtcgcccaagcaaagctttggtgtggcagttctccaagtttggac
attgtttaaataccgtggagagccatctgcccccaggtccgacattcatc
ccctaagttaatttgtcacagtaaacagttttgagtgacagggagtatgg
cagagatcagcagcatacagaacttgtcctttagaaaaggtgtctaggta
ccaccagtctctggtgcagcatcagttttattaggaaaagctagtaaaaa
aaagatcagtcagagatgagccttggtatcatgttacagcacatggtatt
ggcaggatggaggtagattacaagtgaacaaatgtggccctttttcctgg
atgtgtttttttcctccacagtatcctcatatatgaatgacagaggacag
tgctatagccccattccccaggacaaatatacgcattttatatacgcatt
ttatatacgcattttatagcaccctaggaaatgttgggattgctttgatt
aagagttgaaaatatctatttaaagatcagtttttctaattcttctcaac
acatgccaagacgatgcagtggtttggaaacggaccccacactttattaa
tgtcaggcagtagaaggaagcgtgagcataatgagaaactttcatgcacg
acttgactaaatcactgtctcctcgctagtccctaatgtaaagcaaagat
ccttcctcttttctagagggcaaaataggtccagctataaattccagctt
tcctaaagggataggtctgtatctctcacattgcagtgttaatttatttt
gatttaaggtctggttaaaggaacaaaaccaaaaacttgttggagctaaa
gaagaggggggtccgcaatttgagagcaatttgttgccttcttgcagagt
accttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_39562582_39563757
seq2: B6Ng01-299K10.b_45_1231

seq1  GAATTCACTTTTAAAATTCTATAGAAATTAAGCATTTAAAGATTGATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTAAAATTCTATAGAAATTAAGCATTTAAAGATTGATTAA  50

seq1  TTTGGGTTATTTTATATTTAAAGTTTTTCAACCTAATCTATTTATTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTATTTTATATTTAAAGTTTTTCAACCTAATCTATTTATTATCT  100

seq1  CTAACATTTTAGCATTTATTTATTTGTGTGTGTGTATCTGTGTGTGTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATTTTAGCATTTATTTATTTGTGTGTGTGTATCTGTGTGTGTATA  150

seq1  TGTATGTGTGTGTTCAGTATACTACTGTGCACATTGTGTGCATTTGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTGTGTTCAGTATACTACTGTGCACATTGTGTGCATTTGGAAG  200

seq1  GCGGAGGATAACTTGTGGGAACCAATTCTCTCCTTGTCAGGGACCAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAGGATAACTTGTGGGAACCAATTCTCTCCTTGTCAGGGACCAAACT  250

seq1  TTAGTTACCCAGCTGGAGAGCAAGTGTCCTTCCCCTTTGAGCCATCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTACCCAGCTGGAGAGCAAGTGTCCTTCCCCTTTGAGCCATCCCTT  300

seq1  GTCTCTAAATTGAATTATTTCTTTGTTTGTTTGTCAGTAAGAATTTATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAAATTGAATTATTTCTTTGTTTGTTTGTCAGTAAGAATTTATAG  350

seq1  TTTTGAATTTCACAAATATAGACAAAATTCCCATGTTCATTTACTAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATTTCACAAATATAGACAAAATTCCCATGTTCATTTACTAAGAC  400

seq1  CAGAATTAAAAAAATATTTATGTGATATAAATTTTAGGGATTACATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTAAAAAAATATTTATGTGATATAAATTTTAGGGATTACATTTTT  450

seq1  ACTCATTTGCTAATGGCTAAAGAAATGCCCAAGACTAATTTTTATTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTGCTAATGGCTAAAGAAATGCCCAAGACTAATTTTTATTCTTT  500

seq1  ACTGATGAAATAATATTGAGAGCTGAAATTTCAACAGGTTCTGACAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGAAATAATATTGAGAGCTGAAATTTCAACAGGTTCTGACAAGCC  550

seq1  TACTTCAATTTCAGGCTACTACTGCTAATGAGGACTGAAAGGAACCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAATTTCAGGCTACTACTGCTAATGAGGACTGAAAGGAACCTAGG  600

seq1  TAGATGGAGAGTCATCTACTTACTGAATTACTGTGGCTCTCTAGCTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGAGAGTCATCTACTTACTGAATTACTGTGGCTCTCTAGCTCTGG  650

seq1  GAAGGCAATTGATACTCAGTGAATGTGCCATTCAGCTGTTCACTAAAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAATTGATACTCAGTGAATGTGCCATTCAGCTGTTCACTAAAGCC  700

seq1  AGTGAGTTTTATCAAGTATTACCCACATCGAGATAGCAATCCTTCTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTTTATCAAGTATTACCCACATCGAGATAGCAATCCTTCTGGCT  750

seq1  TTGTGGCATCAGGAATTTTCCTAGACTCTCTAAACATCCTCTTCTATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCATCAGGAATTTTCCTAGACTCTCTAAACATCCTCTTCTATGAA  800

seq1  GCAG-AAATGACATCTAC-TTCAAGAATTAAATCAAGTGGCAGGCAAATA  848
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCAGAAAATGACATCTACTTTCAAGAATTAAATCAAGTGGCAGGCAAATA  850

seq1  ATAAAGAAAAGTCTTTATTGCTTTCATAACTAATTTTATCAGTAGATTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAAAGTCTTTATTGCTTTCATAACTAATTTTATCAGTAGATTAG  900

seq1  CATATTATATGCTTGATTTTATTGATAAAATCCAAGTTTCAGGAAATTCT  948
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATATTATATGCTTGATTTTATTGATAAAATCCAAGTTTCAGG-AATTCT  949

seq1  GAAATTGAATATTTTTATAACTTGATTTTAGTTTTGAACTAATTCATTAT  998
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAAATTGAATATTTTTATAACTTGATTTTAGTTTTGACCTAATTCATTAT  999

seq1  GCATTAATTCATCCAACATGAAACAGATAATAAG-CCTGATCAGACATAG  1047
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  GCATTAATTCATCCAACATGAAACAGAT-ATAAGCCCTGATCAGACATAG  1048

seq1  GTGATGTTCCAT-ATTCAG-CTAAAAGCATATAGCTTGTCTGGTTGTGC-  1094
      |||||||  ||| |||||| |||||  |||||||||||||||||  ||| 
seq2  GTGATGT--CATAATTCAGCCTAAAGCCATATAGCTTGTCTGGTGTTGCC  1096

seq1  -TTGTCGCTTAAGC-ATGAGTTTAGACCAC-ATCA-CTCACATAAAACAG  1140
       | ||||||  ||| ||||| ||||||||| |||| |||| |||||||||
seq2  TTGGTCGCT--AGCAATGAG-TTAGACCACAATCACCTCA-ATAAAACAG  1142

seq1  TAGGCAGTCA---GGTGTTGCAGCACAT-----GAGTGAT-TCCA  1176
      ||||||||||   ||||||||  |||||     ||||||| ||||
seq2  TAGGCAGTCAAGGGGTGTTGCCACACATGTGAGGAGTGATCTCCA  1187

seq1: chr13_39714125_39715176
seq2: B6Ng01-299K10.g_68_1126 (reverse)

seq1  -CCCCAGGTTCTCTGCAAGA--GCAACAAA-TGCTCTC-AATTGCGGACC  45
       ||| |||| ||||||||||  |||||||| ||||||| |||||||||||
seq2  CCCCAAGGTACTCTGCAAGAAGGCAACAAATTGCTCTCAAATTGCGGACC  50

seq1  CCTC---TCTTTAGCTCCAAACAAGTTTTTGTTTTTGTTTTCTTTAACCA  92
      || |   ||||||||||| |||||||||||| ||||| || |||||||||
seq2  CCCCTCTTCTTTAGCTCC-AACAAGTTTTTGGTTTTG-TTCCTTTAACCA  98

seq1  GACCTTAAATCAAAATAAATTTAACACTGCAATGTGAGAGATACAGACCT  142
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GACCTTAAATCAAAATAAA-TTAACACTGCAATGTGAGAGATACAGACCT  147

seq1  AT-CCTTTAGGAAAGCTGGAATTTATAGCTGGACCTATTTTGCCCTCTAG  191
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTTAGGAAAGCTGGAATTTATAGCTGGACCTATTTTGCCCTCTAG  197

seq1  AAAAGAGGAAGGATCTTTGCTTTACATTAGGGACTAGCGAGGAGACAGTG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGAAGGATCTTTGCTTTACATTAGGGACTAGCGAGGAGACAGTG  247

seq1  A-TTAGTCAAGTCGTGCATGAAAGTTTCTCATTATGCTCACGCTTCCTTC  290
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTCAAGTCGTGCATGAAAGTTTCTCATTATGCTCACGCTTCCTTC  297

seq1  TACTGCCTGACATTAATAAAGTGTGGGGTCCGTTTCCAAACCACTGCATC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCTGACATTAATAAAGTGTGGGGTCCGTTTCCAAACCACTGCATC  347

seq1  GTCTTGGCATGTGTTGAGAAGAATTAGAAAAACTGATCTTTAAATAGATA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGCATGTGTTGAGAAGAATTAGAAAAACTGATCTTTAAATAGATA  397

seq1  TTTTCAACTCTTAATCAAAGCAATCCCAACATTTCCTAGGGTGCTATAAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAACTCTTAATCAAAGCAATCCCAACATTTCCTAGGGTGCTATAAA  447

seq1  ATGCGTATATAAAATGCGTATATAAAATGCGTATATTTGTCCTGGGGAAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTATATAAAATGCGTATATAAAATGCGTATATTTGTCCTGGGGAAT  497

seq1  GGGGCTATAGCACTGTCCTCTGTCATTCATATATGAGGATACTGTGGAGG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTATAGCACTGTCCTCTGTCATTCATATATGAGGATACTGTGGAGG  547

seq1  AAAAAAACACATCCAGGAAAAAGGGCCACATTTGTTCACTTGTAATCTAC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACACATCCAGGAAAAAGGGCCACATTTGTTCACTTGTAATCTAC  597

seq1  CTCCATCCTGCCAATACCATGTGCTGTAACATGATACCAAGGCTCATCTC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCCTGCCAATACCATGTGCTGTAACATGATACCAAGGCTCATCTC  647

seq1  TGACTGATCTTTTTTTTACTAGCTTTTCCTAATAAAACTGATGCTGCACC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGATCTTTTTTTTACTAGCTTTTCCTAATAAAACTGATGCTGCACC  697

seq1  AGAGACTGGTGGTACCTAGACACCTTTTCTAAAGGACAAGTTCTGTATGC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGGTGGTACCTAGACACCTTTTCTAAAGGACAAGTTCTGTATGC  747

seq1  TGCTGATCTCTGCCATACTCCCTGTCACTCAAAACTGTTTACTGTGACAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATCTCTGCCATACTCCCTGTCACTCAAAACTGTTTACTGTGACAA  797

seq1  ATTAACTTAGGGGATGAATGTCGGACCTGGGGGCAGATGGCTCTCCACGG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTTAGGGGATGAATGTCGGACCTGGGGGCAGATGGCTCTCCACGG  847

seq1  TATTTAAACAATGTCCAAACTTGGAGAACTGCCACACCAAAGCTTTGCTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAACAATGTCCAAACTTGGAGAACTGCCACACCAAAGCTTTGCTT  897

seq1  GGGCGACCCTTAAAAGTCTGTGGTAAAGGACAGACTACACAAATGGACAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGACCCTTAAAAGTCTGTGGTAAAGGACAGACTACACAAATGGACAT  947

seq1  CAATTTGCAGTGCGCCTGACTGTGGAGCCTAGAGGAGAAATCACAAAGCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGCAGTGCGCCTGACTGTGGAGCCTAGAGGAGAAATCACAAAGCT  997

seq1  AAAGTCAAACTCCTATGGATTCTGTTGAAAACCTAACTGACCAAACATGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAAACTCCTATGGATTCTGTTGAAAACCTAACTGACCAAACATGA  1047

seq1  GAGACTGAATTC  1052
      ||||||||||||
seq2  GAGACTGAATTC  1059