BAC Information

Click to search

BAC

Clone NameB6Ng01-300E23
Chromosome13 (Build37)
Map Location 26,516,639 - 26,517,726
singlet/doubletsinglet
Overlap genenone
Upstream geneTpi-rs8, LOC214973, LOC666221
Downstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300E23.bB6Ng01-300E23.g
ACCGA094919GA094920
length1,0851,194
definitionB6Ng01-300E23.b B6Ng01-300E23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcttcttgaacttcactgcagtattccccaatgcacagtcatta
tggttatgtataagttccgtgctggagcatgacaccgggagttgtctaca
tctacatattacacaaatactcccgcagaacagtctttaactttctgcct
ttcatataaaactagctactcctacctaattcttctactaaatttgggtc
acatatttttgttttgtgttagtggaagacaaaaaaatatatttaatttg
cccattaaaagaatttataataatgaatattattcaagaaaatattccaa
gttaatttttagaaaaacctgaaatgagtaccagtgagaaaatgagatga
gatactctattggccaaaagtcatcttgtgttttcccagtgctagtgtga
agtagccactgtataactcagctttcttttttctttcttttttttttttt
tttttgtacaaagagtcaaaaacatatcaaccctattctattgttttaca
ggtcactctatatactgatctagtggaccatgtactagtggatactattc
ccatcagaaatgtcaaaatagcatcattgattatgttaaaactgtgcttt
gaaacattagcctttgtcttagaaaaattatgagccatggagggaaaaaa
attagctaagaagcaaagtgagcccttcttattaacacataggactttaa
tttctaggacccatctaccccacagtcaattcacttagaaaaataaaatg
tcatttaattggcaggacaattgcttaaattctgtgacaaactcaaagaa
atacattccatagatgaaaagataaaaaggaagaaataaaaaggatacaa
attaaatgttaattataaagatgattaaaatgtaataacacacaagattc
atccagctcctgagtaattgacacaaaatatataaatttggggtatataa
tcaccaatcaaactaatatataaacttaaaaaataaattgcttaaaatga
tgcctagttccactgtgatgacagctatctactaaatctgtagagaaatg
ctaatgtgacagccatgactgcatttccaagtcag
gaattctctgtttacttccataccacattttgattgggttgtttggtttt
ctgatgattagcttcttgaattctttatatattttgcatattagcccttt
gtttgatgtggggttagtgaagattttttcccaatctgtaggtttcccct
ttgtcttatttactatgtcctttgccttacagatgttttccagtttcatg
aggtcccatttttctctgtagggagctgtgagagtctatagccaacagga
gccaggggcccaaggggcatggccaaacacctgccattccttataggcaa
taattcacctgctgggtctctgggttcaaagcctgtgctcaaccagggac
cagattgcctgtgcacagctcactgccccatactttgtaactttctcttc
tattagattcagtgcgtctggtttatgtgaaggtccttgatccacctgga
cttgagctttgtacaaggtgacaattatgagtctattttcatttttctat
ataaagacagccaataagaccaacaccatttattgaagatgctgtgtttt
gtttttgtttttgtttttttttttcattatatacttttggcatctttgtc
aaaaatcaagtgtctgtaagtgtctggttttatttctgggttttcaattc
tattctattgatcaacatgtctatctctgaaccaacaccatactgttttt
atcactattgctctgaagtaaagctttaggtcagggatggtgattccccc
agccattcttttattgttaagacttttttttccttttgggattctgggca
ttttgcccttccagatgaaatttgagaactgctctttacatgtctaaaga
actatgttggggattttgatggaaattgcattgaatctgtagatttgcct
ttagtaaggatggccagtttttacctttattaattctgctaatccaatca
gcatggagaggatctcttcatttttctgagcttctcttctattttctttt
cttgagagacttgagtttattgtcatacaggacctttcaaattgtggtgt
tagagttaccccaaatattggaatttatttgtgggctctttgggaggagg
gtcgatttccggctcggttatcatttggttagacgttacctgactatacg
agttagtcttcaattcctggaacacctgctgctggaagatgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26516639_26517726
seq2: B6Ng01-300E23.b_46_1130 (reverse)

seq1  CTGACTTTGAAATGCAAGTCATTGCTGTCACATTAGCA-TTCTCTACAGA  49
      ||||||| ||||||| |||||| ||||||||||||||| |||||||||||
seq2  CTGACTTGGAAATGC-AGTCATGGCTGTCACATTAGCATTTCTCTACAGA  49

seq1  TTTAGTAGATAGCTGTCATCACAGTGGAACCTAAGCATCAATTTTAAGCA  99
      ||||||||||||||||||||||||||||| ||| ||||| ||||||||||
seq2  TTTAGTAGATAGCTGTCATCACAGTGGAA-CTAGGCATC-ATTTTAAGCA  97

seq1  ATTTATTTTTTAAGTTTATAATATTAGTTTGATT-GTGATTATATACCCC  148
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  ATTTATTTTTTAAGTTTAT-ATATTAGTTTGATTGGTGATTATATACCCC  146

seq1  AAATTTATATAATTTTGTGTCAATTACTCAGGAGCTGGATGAATCTTGTG  198
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATAT-ATTTTGTGTCAATTACTCAGGAGCTGGATGAATCTTGTG  195

seq1  TGTTATTACATTTTAATCATCTTTATAATTAACATTTAATTTGTATCCTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTACATTTTAATCATCTTTATAATTAACATTTAATTTGTATCCTT  245

seq1  TTTATTTCTTCCTTTTTATCTTTTCATCTATGGAATGTATTTCTTTGAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTTCCTTTTTATCTTTTCATCTATGGAATGTATTTCTTTGAGT  295

seq1  TTGTCACAGAATTTAAGCAATTGTCCTGCCAATTAAATGACATTTTATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACAGAATTTAAGCAATTGTCCTGCCAATTAAATGACATTTTATTT  345

seq1  TTCTAAGTGAATTGACTGTGGGGTAGATGGGTCCTAGAAATTAAAGTCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTGAATTGACTGTGGGGTAGATGGGTCCTAGAAATTAAAGTCCT  395

seq1  ATGTGTTAATAAGAAGGGCTCACTTTGCTTCTTAGCTAATTTTTTTCCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTAATAAGAAGGGCTCACTTTGCTTCTTAGCTAATTTTTTTCCCT  445

seq1  CCATGGCTCATAATTTTTCTAAGACAAAGGCTAATGTTTCAAAGCACAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTCATAATTTTTCTAAGACAAAGGCTAATGTTTCAAAGCACAGT  495

seq1  TTTAACATAATCAATGATGCTATTTTGACATTTCTGATGGGAATAGTATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATAATCAATGATGCTATTTTGACATTTCTGATGGGAATAGTATC  545

seq1  CACTAGTACATGGTCCACTAGATCAGTATATAGAGTGACCTGTAAAACAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTACATGGTCCACTAGATCAGTATATAGAGTGACCTGTAAAACAA  595

seq1  TAGAATAGGGTTGATATGTTTTTGACTCTTTGTACAAAAAAAAAAAAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAGGGTTGATATGTTTTTGACTCTTTGTACAAAAAAAAAAAAAAA  645

seq1  AAAGAAAGAAAAAAGAAAGCTGAGTTATACAGTGGCTACTTCACACTAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAAAAGAAAGCTGAGTTATACAGTGGCTACTTCACACTAGC  695

seq1  ACTGGGAAAACACAAGATGACTTTTGGCCAATAGAGTATCTCATCTCATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAAAACACAAGATGACTTTTGGCCAATAGAGTATCTCATCTCATT  745

seq1  TTCTCACTGGTACTCATTTCAGGTTTTTCTAAAAATTAACTTGGAATATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTGGTACTCATTTCAGGTTTTTCTAAAAATTAACTTGGAATATT  795

seq1  TTCTTGAATAATATTCATTATTATAAATTCTTTTAATGGGCAAATTAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAATAATATTCATTATTATAAATTCTTTTAATGGGCAAATTAAAT  845

seq1  ATATTTTTTTGTCTTCCACTAACACAAAACAAAAATATGTGACCCAAATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTTGTCTTCCACTAACACAAAACAAAAATATGTGACCCAAATT  895

seq1  TAGTAGAAGAATTAGGTAGGAGTAGCTAGTTTTATATGAAAGGCAGAAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGAAGAATTAGGTAGGAGTAGCTAGTTTTATATGAAAGGCAGAAAG  945

seq1  TTAAAGACTGTTCTGCGGGAGTATTTGTGTAATATGTAGATGTAGACAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGACTGTTCTGCGGGAGTATTTGTGTAATATGTAGATGTAGACAAC  995

seq1  TCCCGGTGTCATGCTCCAGCACGGAACTTATACATAACCATAATGACTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGTGTCATGCTCCAGCACGGAACTTATACATAACCATAATGACTGT  1045

seq1  GCATTGGGGAATACTGCAGTGAAGTTCAAGAAGAGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGGGAATACTGCAGTGAAGTTCAAGAAGAGAATTC  1085