BAC Information

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BAC

Clone NameB6Ng01-300H14
Chromosome13 (Build37)
Map Location 44,618,913 - 44,818,091
singlet/doubletdoublet
Overlap genenone
Upstream geneCcdc90a, Rnf182, LOC100039403, Cd83, LOC100039432, A730030A06, EG637868, EG667157
Downstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr, Atxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300H14.bB6Ng01-300H14.g
ACCGA095041GA095042
length1,147982
definitionB6Ng01-300H14.b B6Ng01-300H14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,618,913 - 44,620,035)(44,817,112 - 44,818,091)
sequence
gaattccatagtccctgattccctctctgggaatttcacaatcagggcag
agtgagtcttactgacagacagaagtccaggaccaggggaaactcttgag
acacacactgtcgtaagactatctcccatctatgttcctcagggcctgct
tatctttcctaaaagccatttgtttctccataagtacacccccttctgca
attaagatgttacatgtgccctaaatcctaacagcttcttcgagtcacat
tcttccgtgacctcctgtgtgctcacataaataaatagttatctgctctc
ctgaaatctgtcttgtgtccatttaatttgaggttctcccttgtggaaca
ctcgagggcagaggaaaagtgtgtggaaagtctaagggaggaaaagttac
aagccgccatgaaagtaagacacttggaacactgtgtcgctaaagataac
tgtggagtggattctgcaaggagtgtagctttagccttcagggggacgtt
gttccagatcttaagaaattccaacgttcagttactgtctgcaccaagag
cagtgctgctttccagggtctctttctgccctcttctcttccccactctt
ctttctctccttttcttcttcctctccctgttcctcctccctcccccttc
tttccccgttctgctttctcttcatctattaatggactttcttttataac
catttcttttcattttttatattgtttagctgttttgtaggaggtacaca
tttgtaggagacccccaggtttggtcatcaggcttggaggtaaacatctt
tacccactgagccatcttaccagcctgacgatactgcttgtttatataaa
actaacgaacactacagtgatattctatacgcgctatactctcaccccaa
tactcagtgttcctccactgtttaacattcctctgatgcaatttgttata
aatagatatgtcccatattttcatttaagatcttttgttaccattaagcc
ttccctttgtgcagaattctgtttcctttctttcctcttctttctccctc
ctccctcttcttcagaatatactattttttcatttgtatgtattatgaag
tgttttgcctggcatgtatatatatacacaatgtatgcctggtggag
gaattccctacactgatcagggagagcaaaaactgtctcttgccaaatct
gtgacatttataaagtttacagtccatcttccaaaaccatctcccttcta
taagtggatgggcacacagtagaatgaagaagactccaaccttggtggtc
actctgtgtctaaactccatagattattcatttacaacttctttgtgttt
ccattgtcaacgattccttgaataaaaagaagttggatgtttactaggga
tgtaaaatcacagcagatctgttcctccaaggcatagaacacaccatgaa
tttctcaaggccaaggtgaaagaaatgttgagtaacaaagaggggccctc
tgggtggggctccaggatcgaccgcctgaggagcacaccagggtctctct
gggtgacaatggggttggaggagaatgaggaagtagggaaactatttgaa
tgtggaaaggaaccaccctgctctcaacaaagggttggccagtaggaagt
acccatctcaacagattgcaaaaaaggggcccaacaatttgtagtggtat
gacacgttttttattcttagtattttggaggcagaggaaaggagctaggt
ctctgtgatttccgggccacccagaattacataatgagaccttgtctcaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaggtcctagctaagtata
atgtcacatgcctttaagccctcctgaggcagaggcaggatgacctctgt
tcttttgaggccagcttggtctacatagtgagttttcaggacagcctgaa
ctacaaagttagaccctgtctcaaaaacaaacaaaaaatacccaaagaag
tgaaggttattaatacaatacagtggtctggcacttcctgaaaaataaaa
agattttgttttttattatttgggaaaagctggctgggtgtagcacatgc
atttatccagtatcctgaattccagacagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_44618913_44620035
seq2: B6Ng01-300H14.b_46_1192

seq1  GAATTCCATAGTCCCTGATTCCCTCTCTGGGAATTTCACAATCAGGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGTCCCTGATTCCCTCTCTGGGAATTTCACAATCAGGGCAG  50

seq1  AGTGAGTCTTACTGACAGACAGAAGTCCAGGACCAGGGGAAACTCTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTCTTACTGACAGACAGAAGTCCAGGACCAGGGGAAACTCTTGAG  100

seq1  ACACACACTGTCGTAAGACTATCTCCCATCTATGTTCCTCAGGGCCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACTGTCGTAAGACTATCTCCCATCTATGTTCCTCAGGGCCTGCT  150

seq1  TATCTTTCCTAAAAGCCATTTGTTTCTCCATAAGTACACCCCCTTCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCCTAAAAGCCATTTGTTTCTCCATAAGTACACCCCCTTCTGCA  200

seq1  ATTAAGATGTTACATGTGCCCTAAATCCTAACAGCTTCTTCGAGTCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGATGTTACATGTGCCCTAAATCCTAACAGCTTCTTCGAGTCACAT  250

seq1  TCTTCCGTGACCTCCTGTGTGCTCACATAAATAAATAGTTATCTGCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCGTGACCTCCTGTGTGCTCACATAAATAAATAGTTATCTGCTCTC  300

seq1  CTGAAATCTGTCTTGTGTCCATTTAATTTGAGGTTCTCCCTTGTGGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATCTGTCTTGTGTCCATTTAATTTGAGGTTCTCCCTTGTGGAACA  350

seq1  CTCGAGGGCAGAGGAAAAGTGTGTGGAAAGTCTAAGGGAGGAAAAGTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGGGCAGAGGAAAAGTGTGTGGAAAGTCTAAGGGAGGAAAAGTTAC  400

seq1  AAGCCGCCATGAAAGTAAGACACTTGGAACACTGTGTCGCTAAAGATAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGCCATGAAAGTAAGACACTTGGAACACTGTGTCGCTAAAGATAAC  450

seq1  TGTGGAGTGGATTCTGCAAGGAGTGTAGCTTTAGCCTTCAGGGGGACGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGTGGATTCTGCAAGGAGTGTAGCTTTAGCCTTCAGGGGGACGTT  500

seq1  GTTCCAGATCTTAAGAAATTCCAACGTTCAGTTACTGTCTGCACCAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGATCTTAAGAAATTCCAACGTTCAGTTACTGTCTGCACCAAGAG  550

seq1  CAGTGCTGCTTTCCAGGGTCTCTTTCTGCCCTCTTCTCTTCCCCACTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGCTTTCCAGGGTCTCTTTCTGCCCTCTTCTCTTCCCCACTCTT  600

seq1  CTTTCTCTCCTTTTCTTCTTCCTCTCCCTGTTCCTCCTCCCTCCCCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCCTTTTCTTCTTCCTCTCCCTGTTCCTCCTCCCTCCCCCTTC  650

seq1  TTTCCCCGTTCTGCTTTCTCTTCATCTATTAATGGACTTTCTTTTATAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCGTTCTGCTTTCTCTTCATCTATTAATGGACTTTCTTTTATAAC  700

seq1  CATTTCTTTTCATTTTTTATATTGTTTAGCTGTTTTGTAGGAGGTACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTTCATTTTTTATATTGTTTAGCTGTTTTGTAGGAGGTACACA  750

seq1  TTTGTAGGAGACCCCCAGGTTTGGTCATCAGGCTTGGAGGTAAACATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGGAGACCCCCAGGTTTGGTCATCAGGCTTGGAGGTAAACATCTT  800

seq1  TACCCACTGAGCCATCTTACCAGCCTGACGATACTGC-TGTTTATATAAA  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TACCCACTGAGCCATCTTACCAGCCTGACGATACTGCTTGTTTATATAAA  850

seq1  ACTAACGAACACTACAGTGATA-TCTATACGCGCTATACTCTCACCCC-A  897
      |||||||||||||||||||||| ||||||||||||||||||||||||| |
seq2  ACTAACGAACACTACAGTGATATTCTATACGCGCTATACTCTCACCCCAA  900

seq1  TACTCAGTG-TCCTCCACTG-TTAACATTCCTCTGATGC-ATTTGTTATA  944
      ||||||||| |||||||||| |||||||||||||||||| ||||||||||
seq2  TACTCAGTGTTCCTCCACTGTTTAACATTCCTCTGATGCAATTTGTTATA  950

seq1  AATAGATATGTCCCATA-TTTCATTT-AGATCTTTTGTTACCATTAAGCC  992
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  AATAGATATGTCCCATATTTTCATTTAAGATCTTTTGTTACCATTAAGCC  1000

seq1  -TCCCTTTGTGCAG-ATTCTGTTTCCTT--CTTCCTCTTC-TTCTTCCTC  1037
       ||||||||||||| |||||||||||||   ||||||||| |||| ||||
seq2  TTCCCTTTGTGCAGAATTCTGTTTCCTTTCTTTCCTCTTCTTTCTCCCTC  1050

seq1  CT-CCTCTTCTTCAG-ATATACTA--TTTTCA-TTGTATGTA-TATG-AG  1080
      || |||||||||||| ||||||||  |||||| ||||||||| |||| ||
seq2  CTCCCTCTTCTTCAGAATATACTATTTTTTCATTTGTATGTATTATGAAG  1100

seq1  TGTTTTGCCT-GCATGTATATATA-CCAC-ATGTATGCCT-GTGGAG  1123
      |||||||||| |||||||||||||  ||| |||||||||| ||||||
seq2  TGTTTTGCCTGGCATGTATATATATACACAATGTATGCCTGGTGGAG  1147

seq1: chr13_44817112_44818091
seq2: B6Ng01-300H14.g_68_1049 (reverse)

seq1  AGGCTGTCCTTGAATTCA-GATACTGGGATTAAATGCATGTGCTACCACC  49
      ||||||| || ||||||| ||||||||   ||||||||||||||||  ||
seq2  AGGCTGT-CTGGAATTCAGGATACTGG--ATAAATGCATGTGCTACACCC  47

seq1  AACCAGCTTTT-CCAAATAAT-AAAAACAAAATCTTTTTA-TTTTCAGG-  95
      | ||||||||| ||||||||| |||||||||||||||||| |||||||| 
seq2  AGCCAGCTTTTCCCAAATAATAAAAAACAAAATCTTTTTATTTTTCAGGA  97

seq1  AGTGCCAGACCACTGTTATTGTATTAATTAACCTCACTTCTTTGGGTATT  145
      ||||||||||||||| |||||||||||| | | |||||||||||||||||
seq2  AGTGCCAGACCACTG-TATTGTATTAATAACCTTCACTTCTTTGGGTATT  146

seq1  TTTTGTTTGTTTTTGAGACAGGGTCTAACTTTGTAGTTCAGGCTGTCCTG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTTTTGAGACAGGGTCTAACTTTGTAGTTCAGGCTGTCCTG  196

seq1  -AAACTCACTATGTAGACCAAGCTGGCCTCAAAAGAACAGAGGTCATCCT  244
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCACTATGTAGACCAAGCTGGCCTCAAAAGAACAGAGGTCATCCT  246

seq1  GCCTCTGCCTCAGGAGGGCTTAAAGGCATGTGACATTATACTTAGCTAGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCAGGAGGGCTTAAAGGCATGTGACATTATACTTAGCTAGG  296

seq1  ACCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAAGGTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAAGGTCT  346

seq1  CATTATGTAATTCTGGGTGGCCCGGAAATCACAGAGACCTAGCTCCTTTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGTAATTCTGGGTGGCCCGGAAATCACAGAGACCTAGCTCCTTTC  396

seq1  CTCTGCCTCCAAAATACTAAGAATAAAAAACGTGTCATACCACTACAAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCAAAATACTAAGAATAAAAAACGTGTCATACCACTACAAAT  446

seq1  TGTTGGGCCCCTTTTTTGCAATCTGTTGAGATGGGTACTTCCTACTGGCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGCCCCTTTTTTGCAATCTGTTGAGATGGGTACTTCCTACTGGCC  496

seq1  AACCCTTTGTTGAGAGCAGGGTGGTTCCTTTCCACATTCAAATAGTTTCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTGTTGAGAGCAGGGTGGTTCCTTTCCACATTCAAATAGTTTCC  546

seq1  CTACTTCCTCATTCTCCTCCAACCCCATTGTCACCCAGAGAGACCCTGGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCTCATTCTCCTCCAACCCCATTGTCACCCAGAGAGACCCTGGT  596

seq1  GTGCTCCTCAGGCGGTCGATCCTGGAGCCCCACCCAGAGGGCCCCTCTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCTCAGGCGGTCGATCCTGGAGCCCCACCCAGAGGGCCCCTCTTT  646

seq1  GTTACTCAACATTTCTTTCACCTTGGCCTTGAGAAATTCATGGTGTGTTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTCAACATTTCTTTCACCTTGGCCTTGAGAAATTCATGGTGTGTTC  696

seq1  TATGCCTTGGAGGAACAGATCTGCTGTGATTTTACATCCCTAGTAAACAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTTGGAGGAACAGATCTGCTGTGATTTTACATCCCTAGTAAACAT  746

seq1  CCAACTTCTTTTTATTCAAGGAATCGTTGACAATGGAAACACAAAGAAGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTCTTTTTATTCAAGGAATCGTTGACAATGGAAACACAAAGAAGT  796

seq1  TGTAAATGAATAATCTATGGAGTTTAGACACAGAGTGACCACCAAGGTTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGAATAATCTATGGAGTTTAGACACAGAGTGACCACCAAGGTTG  846

seq1  GAGTCTTCTTCATTCTACTGTGTGCCCATCCACTTATAGAAGGGAGATGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTCTTCATTCTACTGTGTGCCCATCCACTTATAGAAGGGAGATGG  896

seq1  TTTTGGAAGATGGACTGTAAACTTTATAAATGTCACAGATTTGGCAAGAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAAGATGGACTGTAAACTTTATAAATGTCACAGATTTGGCAAGAG  946

seq1  ACAGTTTTTGCTCTCCCTGATCAGTGTAGGGAATTC  980
      ||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTTGCTCTCCCTGATCAGTGTAGGGAATTC  982