BAC Information

Click to search

BAC

Clone NameB6Ng01-300H16
Chromosome13 (Build37)
Map Location 17,427,140 - 17,428,223
singlet/doubletsinglet
Overlap gene5033411D12Rik
Upstream geneLOC665191
Downstream gene2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300H16.bB6Ng01-300H16.g
ACCGA095045GA095046
length1,0771,194
definitionB6Ng01-300H16.b B6Ng01-300H16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctagccagaaatcctcatataacattgctgtcaagggcactacgg
aattatgtaattcaagagagggcttgtatttcgcaatgagttttcaaaat
gtgttattccacatgaaaaatgtgtgctaattgccaaaatggtagtaggg
aagctcgagaggctgggactcacttgctattctctgtgttgttccattcc
tttgatgacactgttcttgatctgcaagcagtccataccttgttgccatc
tggcagctggctccagcaccataaggtgcactgaactgttagcagtagga
aatagtgctctgtattggtcatgatgtgccagcacagacccagaagtcag
ttgcctgatggtacagaaaacactataaaggcagtgaagattagaaagac
ttcatggaaggtctttttcctgtgaatgatgacgggcattttcagtggtt
cccttttgtggaagaaaatgttaaatgtaagtagccccaggaaggcttag
catgtgtgttatttatttatctatctatttatttatttatttatttattt
atttatttatttatttatttatttatttatttatttgaagttgataaccc
tagcaagtacacataccttattaatggtagagacagaattatagatatac
agacagggcagtttacaaagacagtacaggaaggcatagctatactccac
cttttcccttgagtatattcaattggtgaggtatgtctagaagtccatct
gtgttgttattattggtgagattaccaactaagacaccactggaagccca
ataatcataatatctgggaaggactaaaaccttccatgtgcaacatatat
tctagaataaatatgcttgctacccacatcccaacgtctactccacaaag
cctcagctgtggtcacctgttgcttctgaaactttctttttttttttttt
taccttttatgtgtgtttattttttccattttttattagtatttagctca
tttacatttccaatgctattaccaaagttccccatacccacctaccctca
ctcccctgcccaccaactccctttttg

gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaaccaaaacaaccctaagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacattcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctca
gcaaattggacataatactaccggaggatcccgcaatacctctcctgggc
atatatccagatgatgtcccaacgggtaagaaggacacatgctccactgt
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctccacagaggaatggatacagaaaatgtggtacatttatacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaactcacacaatatgtactcactcataagtggatattagcccagaaac
ttaggatacccaagatataagatacaatttgctaaacgcatgaaactcaa
gaagaatgaagaccaaagtgtggacactttgccccttcttagaattggga
caaaacacccatggaaggagttacagagacaaaatttggagctgtgatga
aaggatggaacatatagtgattgccatatccatggatccatcccataatc
agcttccaaatgctgacaacattgcatacactagcaagatcttgctataa
gaacccagatagagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctcttggatggatcacagggccccaa
tggaggaactagagaaagtacccaaggagctaaagggaactgcaacctat
aggtggaacaacatatgaagtaaccagtaccccagagctcttgtctctag
ctgcatatgttatcaaaagaatgggcttagtcgtcattcactggtaaaga
gaggcccatccgacacacaactttaatgcccagttaaggaacgcagtcca
aaatggaatggctgaatagggaaggtggcgagtacacttcctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_17427140_17428223
seq2: B6Ng01-300H16.b_45_1121 (reverse)

seq1  CAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGGTAGGTGGGTATGGGG  50
      ||||||  |||||| |||||||||||||||| ||||||||||||||||||
seq2  CAAAAA--GGGAGTTGGTGGGCAGGGGAGTGAGGGTAGGTGGGTATGGGG  48

seq1  GACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAA  100
       ||||| |  |||||||||||||||||||||||||||||| |||||||||
seq2  AACTTTGGTAATAGCATTGGAAATGTAAATGAGCTAAATA-CTAATAAAA  97

seq1  AATGGAAAAAAATAAAACACACATAAAAAGTAAAAAAAAAAAAAAAAGAA  150
      |||||||||||   |||||||||||||| |||||||||||||||||   |
seq2  AATGGAAAAAA--TAAACACACATAAAAGGTAAAAAAAAAAAAAAA--GA  143

seq1  AAGTTTCAGAAGCAACAGGTGACCACAGCTGAGGCTTTGTGGAGTAGACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCAGAAGCAACAGGTGACCACAGCTGAGGCTTTGTGGAGTAGACG  193

seq1  TTGGGATGTGGGTAGCAAGCATATTTATTCTAGAATATATGTTGCACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATGTGGGTAGCAAGCATATTTATTCTAGAATATATGTTGCACATG  243

seq1  GAAGGTTTTAGTCCTTCCCAGATATTATGATTATTGGGCTTCCAGTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTTTAGTCCTTCCCAGATATTATGATTATTGGGCTTCCAGTGGTG  293

seq1  TCTTAGTTGGTAATCTCACCAATAATAACAACACAGATGGACTTCTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTTGGTAATCTCACCAATAATAACAACACAGATGGACTTCTAGAC  343

seq1  ATACCTCACCAATTGAATATACTCAAGGGAAAAGGTGGAGTATAGCTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCACCAATTGAATATACTCAAGGGAAAAGGTGGAGTATAGCTATG  393

seq1  CCTTCCTGTACTGTCTTTGTAAACTGCCCTGTCTGTATATCTATAATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGTACTGTCTTTGTAAACTGCCCTGTCTGTATATCTATAATTCT  443

seq1  GTCTCTACCATTAATAAGGTATGTGTACTTGCTAGGGTTATCAACTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTACCATTAATAAGGTATGTGTACTTGCTAGGGTTATCAACTTCAA  493

seq1  ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT  543

seq1  AAATAAATAGATAGATAAATAAATAACACACATGCTAAGCCTTCCTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAGATAGATAAATAAATAACACACATGCTAAGCCTTCCTGGGG  593

seq1  CTACTTACATTTAACATTTTCTTCCACAAAAGGGAACCACTGAAAATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTACATTTAACATTTTCTTCCACAAAAGGGAACCACTGAAAATGCC  643

seq1  CGTCATCATTCACAGGAAAAAGACCTTCCATGAAGTCTTTCTAATCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATCATTCACAGGAAAAAGACCTTCCATGAAGTCTTTCTAATCTTCA  693

seq1  CTGCCTTTATAGTGTTTTCTGTACCATCAGGCAACTGACTTCTGGGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTATAGTGTTTTCTGTACCATCAGGCAACTGACTTCTGGGTCTG  743

seq1  TGCTGGCACATCATGACCAATACAGAGCACTATTTCCTACTGCTAACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCACATCATGACCAATACAGAGCACTATTTCCTACTGCTAACAGT  793

seq1  TCAGTGCACCTTATGGTGCTGGAGCCAGCTGCCAGATGGCAACAAGGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCACCTTATGGTGCTGGAGCCAGCTGCCAGATGGCAACAAGGTAT  843

seq1  GGACTGCTTGCAGATCAAGAACAGTGTCATCAAAGGAATGGAACAACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCTTGCAGATCAAGAACAGTGTCATCAAAGGAATGGAACAACACA  893

seq1  GAGAATAGCAAGTGAGTCCCAGCCTCTCGAGCTTCCCTACTACCATTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAGCAAGTGAGTCCCAGCCTCTCGAGCTTCCCTACTACCATTTTG  943

seq1  GCAATTAGCACACATTTTTCATGTGGAATAACACATTTTGAAAACTCATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTAGCACACATTTTTCATGTGGAATAACACATTTTGAAAACTCATT  993

seq1  GCGAAATACAAGCCCTCTCTTGAATTACATAATTCCGTAGTGCCCTTGAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAATACAAGCCCTCTCTTGAATTACATAATTCCGTAGTGCCCTTGAC  1043

seq1  AGCAATGTTATATGAGGATTTCTGGCTAGAATTC  1084
      ||||||||||||||||||||||||||||||||||
seq2  AGCAATGTTATATGAGGATTTCTGGCTAGAATTC  1077


| Home | SequenceCutter | Blast | Download |