BAC Information

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BAC

Clone NameB6Ng01-300H17
Chromosome13 (Build37)
Map Location 90,296,479 - 90,495,546
singlet/doubletdoublet
Overlap genenone
Upstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
Downstream geneLOC624190, EG435376, Rps23, Atg10, LOC100042959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300H17.bB6Ng01-300H17.g
ACCGA095047GA095048
length1,1731,174
definitionB6Ng01-300H17.b B6Ng01-300H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,296,479 - 90,297,651)(90,494,381 - 90,495,546)
sequence
gaattcctccttattcccattgtaagaattggaatggggaagggctaaga
caagaaacatggaacaagttgaggaaatccaccctaaagcttctcttttc
tcatgtttttcagcaatagccaataatctccatcatatttaagtcatttt
aagttttttttactatttgtaattaagagcatctaaaaattttctgaatt
ttcatcacagattttaatgtcatttgtgtgaaagtttgagtgtcttcgaa
tccattggaattaacattgagttcctgacctctacatttgttagtaatgt
atttcaaatctatattttgggaatattaacaaataaattcacaaggaaat
aagaaagtaaatacatgttcattgctatttttaattgtttcattaaagaa
aaccttggtttagttgctatattcaagaaaagaaattcaacccataaatg
aaaaagacccctctaatctctagaagctaatcttcgatttaaccaactaa
tttttaagacatagtacttataaactcatgttcactgtgatttgaaagct
caggttttctacaatgttgagtaacatctctgttaaccaatgcaaaatat
ttccttaaagccgtggttttctatcctatctataattatcaagatacatt
atttgttgtgaagaaaaccaatagtgaaactgagtaaagcttttcaatgt
atggaaaaaatagtcaccagaagtaagtaacacagagtcatatagctgct
aaagacatatttttttccaacccaaagagatgcttcttgcccatccagat
ttgaggaccttcatgatagttggaagaagtcgaacataagaatttggagg
aaaggaaccgttgtgtatacatcactgttgtgtgttataaacaccgtacg
aattttagtcttcctgccttcaagaaatgttatatgcctattttcagttg
ctggctggatttctttggaaaaagaatcagtataaagtgacatagtgtta
acatgatttataaatcccttatcatggccagattctacctttggtttgca
cttgcatttgcattttctcagctcttcattttgcaaatgaaaaaaaaaaa
aactgatctaagagaaagcttgttttatagaaagcctcagtagcctagtg
aactgaataccaggtaggaagca

gaattctccacttacttatgttgtagctacttaagtaaaaaacatttgga
aggttggtatgggggatatctcagtaggagagatatgccaagtaatcatg
agacactggattctatcttcaacatgcacatgcacagacacacacaatta
ttataagaactaggcctggtgacacaagttgataatcagatacatgaaaa
ggtgagataagaagagctcatttggaggcctgccatagtctcactaaaat
aatagtaagaagaaagctgacattgtagctcagtgatagaacacttgcct
tgcttgtacctataggcgcaatcaccagataattgcatgcagttgtacat
tttagatcacagtgtaggatctttaactcaaatctctttatgaccaggaa
agcataaatgagtaaggagctacattaatataacctggaattatagggcc
attgaaactagaatgtacacagcactcctatagcatacaaattcatttat
ttaaaatttatgatgctatcacctgtaagcatgagttattaaagttggta
tgtgtttttcaggatggaaaaacacaggtgctggtgaccaaactaagtta
aacagtcagtaggtcaaagtgtttcttaattcaacccaagtacagcaatc
tgctctatgaaaccaatttccaagtaaaatctgaaaacatagaaagactt
tcaactttacttgattacacaaaaaattattttagttccttagataaagc
tcagcaaaaatgtgatttctcctaaattctatatttttctggtttgtatc
atataccaactatttcctattaagcaacatgctttatatttgtggtctta
gagaatctgcatgttcagatattatagataaccagtacaaattatgcatt
ttatttggatctaaattatttatgacatgttgtcaaatagcctgtacata
aatgctcaaaagatctcctactatatttaaattatttttgacagcactat
tgtttttccacttttttgtaagttgtttcaatttccaaattatattttta
tagaacatgagttgagatatattatatacttcatatgtacatattccaac
accagagatgccaccatatacatatatagttaaaaatagaactaaagttt
tttgaggtaaaggggtgtacaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_90296479_90297651
seq2: B6Ng01-300H17.b_42_1214

seq1  GAATTCCTCCTTATTCCCATTGTAAGAATTGGAATGGGGAAGGGCTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTTATTCCCATTGTAAGAATTGGAATGGGGAAGGGCTAAGA  50

seq1  CAAGAAACATGGAACAAGTTGAGGAAATCCACCCTAAAGCTTCTCTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAACATGGAACAAGTTGAGGAAATCCACCCTAAAGCTTCTCTTTTC  100

seq1  TCATGTTTTTCAGCAATAGCCAATAATCTCCATCATATTTAAGTCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTTTCAGCAATAGCCAATAATCTCCATCATATTTAAGTCATTTT  150

seq1  AAGTTTTTTTTACTATTTGTAATTAAGAGCATCTAAAAATTTTCTGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTTTTACTATTTGTAATTAAGAGCATCTAAAAATTTTCTGAATT  200

seq1  TTCATCACAGATTTTAATGTCATTTGTGTGAAAGTTTGAGTGTCTTCGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACAGATTTTAATGTCATTTGTGTGAAAGTTTGAGTGTCTTCGAA  250

seq1  TCCATTGGAATTAACATTGAGTTCCTGACCTCTACATTTGTTAGTAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGGAATTAACATTGAGTTCCTGACCTCTACATTTGTTAGTAATGT  300

seq1  ATTTCAAATCTATATTTTGGGAATATTAACAAATAAATTCACAAGGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAATCTATATTTTGGGAATATTAACAAATAAATTCACAAGGAAAT  350

seq1  AAGAAAGTAAATACATGTTCATTGCTATTTTTAATTGTTTCATTAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTAAATACATGTTCATTGCTATTTTTAATTGTTTCATTAAAGAA  400

seq1  AACCTTGGTTTAGTTGCTATATTCAAGAAAAGAAATTCAACCCATAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGGTTTAGTTGCTATATTCAAGAAAAGAAATTCAACCCATAAATG  450

seq1  AAAAAGACCCCTCTAATCTCTAGAAGCTAATCTTCGATTTAACCAACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACCCCTCTAATCTCTAGAAGCTAATCTTCGATTTAACCAACTAA  500

seq1  TTTTTAAGACATAGTACTTATAAACTCATGTTCACTGTGATTTGAAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGACATAGTACTTATAAACTCATGTTCACTGTGATTTGAAAGCT  550

seq1  CAGGTTTTCTACAATGTTGAGTAACATCTCTGTTAACCAATGCAAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTTCTACAATGTTGAGTAACATCTCTGTTAACCAATGCAAAATAT  600

seq1  TTCCTTAAAGCCGTGGTTTTCTATCCTATCTATAATTATCAAGATACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAAGCCGTGGTTTTCTATCCTATCTATAATTATCAAGATACATT  650

seq1  ATTTGTTGTGAAGAAAACCAATAGTGAAACTGAGTAAAGCTTTTCAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGTGAAGAAAACCAATAGTGAAACTGAGTAAAGCTTTTCAATGT  700

seq1  ATGGAAAAAATAGTCACCAGAAGTAAGTAACACAGAGTCATATAGCTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAAATAGTCACCAGAAGTAAGTAACACAGAGTCATATAGCTGCT  750

seq1  AAAGACATATTTTTTTCCAACCCAAAGAGATGCTTCTTGCCCATCCAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATATTTTTTTCCAACCCAAAGAGATGCTTCTTGCCCATCCAGAT  800

seq1  TTGAGGACCTTCATGATAGTTGGAAGAAGTCGAACATAAGAATTTGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGACCTTCATGATAGTTGGAAGAAGTCGAACATAAGAATTTGGAGG  850

seq1  AAAGGAACCGTTGTGTATACATCACTGTTGTGTGTTATAAACACCGTACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACCGTTGTGTATACATCACTGTTGTGTGTTATAAACACCGTACG  900

seq1  AATTTTAGTCTTCCTGCCTTCAAGAAATGTTATATGCCTATTTTCAGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGTCTTCCTGCCTTCAAGAAATGTTATATGCCTATTTTCAGTTG  950

seq1  CTGGCTGGATTTCTTTGGAAAAAGAAATCAGTATAAAGTGACATAGTGTT  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGGCTGGATTTCTTTGGAAAAAG-AATCAGTATAAAGTGACATAGTGTT  999

seq1  AACAATGATTTATAAATCCCTTATCATGGCCAAGAATTCTACCTTTGGTT  1050
      ||| ||||||||||||||||||||||||||||   |||||||||||||||
seq2  AAC-ATGATTTATAAATCCCTTATCATGGCCA--GATTCTACCTTTGGTT  1046

seq1  TGCACTTGCATTTGCA-TTTCTCAGCTCTTCATTTTGCAAATGAAAAAAA  1099
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCACTTGCATTTGCATTTTCTCAGCTCTTCATTTTGCAAATGAAAAAAA  1096

seq1  AAAAAACTGATCCTAAGAG-AAGCTTG-TTTATAGAA--GCTCAGTAAGC  1145
      ||||||||||| ||||||| ||||||| |||||||||   |||||||  |
seq2  AAAAAACTGAT-CTAAGAGAAAGCTTGTTTTATAGAAAGCCTCAGTAGCC  1145

seq1  TAGTG-ACTGAATAACAGGTAGGGAAGCA  1173
      ||||| |||||||| |||||| |||||||
seq2  TAGTGAACTGAATACCAGGTA-GGAAGCA  1173


seq1: chr13_90494381_90495546
seq2: B6Ng01-300H17.g_70_1243 (reverse)

seq1  GTTTGTACA---CTTTACCTCAAAAAATTTTATGTTGGTTATTTTTTAAT  47
      |||||||||   ||||||||||||||| |||| |||   ||||||| | |
seq2  GTTTGTACACCCCTTTACCTCAAAAAACTTTA-GTT--CTATTTTTAACT  47

seq1  -TATATGTATATG--TGCATCTCT-GTGTTTGGATATGTACATATG-AGT  92
       ||||||||||||   |||||||| ||||| | ||||||||||||| |||
seq2  ATATATGTATATGGTGGCATCTCTGGTGTTGGAATATGTACATATGAAGT  97

seq1  ATATTATATTATTTCTCAACTCATGTTCTAT-AAAATATAATTTG--AAA  139
      |   |||| ||| |||||||||||||||||| |||||||||||||  || 
seq2  A---TATAATATATCTCAACTCATGTTCTATAAAAATATAATTTGGAAAT  144

seq1  TGAAACAACTTACAAAAAAGTGGAAAAAACAAATAGTGCTGTC-AAAATA  188
      ||||||||||||||||||||||||||||   |||||||||||| ||||||
seq2  TGAAACAACTTACAAAAAAGTGGAAAAA--CAATAGTGCTGTCAAAAATA  192

seq1  A-TTAAATATAGTAGGAGATCTTTTGAGCATTTATGTACAGGCTATTTGA  237
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATATAGTAGGAGATCTTTTGAGCATTTATGTACAGGCTATTTGA  242

seq1  CAACATGTCAT-AATAATTTAGATCCAAAT-AAATGCATAATTTGTACTG  285
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  CAACATGTCATAAATAATTTAGATCCAAATAAAATGCATAATTTGTACTG  292

seq1  GTTATCTATAATATCTGAACATGCAGATTCTCTAAGACCACAAATAT-AA  334
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTTATCTATAATATCTGAACATGCAGATTCTCTAAGACCACAAATATAAA  342

seq1  GCATGTTGCTTAATAGGAAATAGTTGGTATATGATACAAACCAGAAAAAT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTGCTTAATAGGAAATAGTTGGTATATGATACAAACCAGAAAAAT  392

seq1  ATAGAATTTAGGAGAAATCACATTTTTGCTGAGCTTTATCTAAGGAACTA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTTAGGAGAAATCACATTTTTGCTGAGCTTTATCTAAGGAACTA  442

seq1  AAATAATTTTTTGTGTAATCAAGTAAAGTTGAAAGTCTTTCTATGTTTTC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTTTTGTGTAATCAAGTAAAGTTGAAAGTCTTTCTATGTTTTC  492

seq1  AGATTTTACTTGGAAATTGGTTTCATAGAGCAGATTGCTGTACTTGGGTT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTACTTGGAAATTGGTTTCATAGAGCAGATTGCTGTACTTGGGTT  542

seq1  GAATTAAGAAACACTTTGACCTACTGACTGTTTAACTTAGTTTGGTCACC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAGAAACACTTTGACCTACTGACTGTTTAACTTAGTTTGGTCACC  592

seq1  AGCACCTGTGTTTTTCCATCCTGAAAAACACATACCAACTTTAATAACTC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTGTGTTTTTCCATCCTGAAAAACACATACCAACTTTAATAACTC  642

seq1  ATGCTTACAGGTGATAGCATCATAAATTTTAAATAAATGAATTTGTATGC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTACAGGTGATAGCATCATAAATTTTAAATAAATGAATTTGTATGC  692

seq1  TATAGGAGTGCTGTGTACATTCTAGTTTCAATGGCCCTATAATTCCAGGT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGAGTGCTGTGTACATTCTAGTTTCAATGGCCCTATAATTCCAGGT  742

seq1  TATATTAATGTAGCTCCTTACTCATTTATGCTTTCCTGGTCATAAAGAGA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAATGTAGCTCCTTACTCATTTATGCTTTCCTGGTCATAAAGAGA  792

seq1  TTTGAGTTAAAGATCCTACACTGTGATCTAAAATGTACAACTGCATGCAA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTAAAGATCCTACACTGTGATCTAAAATGTACAACTGCATGCAA  842

seq1  TTATCTGGTGATTGCGCCTATAGGTACAAGCAAGGCAAGTGTTCTATCAC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGGTGATTGCGCCTATAGGTACAAGCAAGGCAAGTGTTCTATCAC  892

seq1  TGAGCTACAATGTCAGCTTTCTTCTTACTATTATTTTAGTGAGACTATGG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTACAATGTCAGCTTTCTTCTTACTATTATTTTAGTGAGACTATGG  942

seq1  CAGGCCTCCAAATGAGCTCTTCTTATCTCACCTTTTCATGTATCTGATTA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTCCAAATGAGCTCTTCTTATCTCACCTTTTCATGTATCTGATTA  992

seq1  TCAACTTGTGTCACCAGGCCTAGTTCTTATAATAATTGTGTGTGTCTGTG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTGTGTCACCAGGCCTAGTTCTTATAATAATTGTGTGTGTCTGTG  1042

seq1  CATGTGCATGTTGAAGATAGAATCCAGTGTCTCATGATTACTTGGCATAT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCATGTTGAAGATAGAATCCAGTGTCTCATGATTACTTGGCATAT  1092

seq1  CTCTCCTACTGAGATATCCCCCATACCAACCTTCCAAATGTTTTTTACTT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTACTGAGATATCCCCCATACCAACCTTCCAAATGTTTTTTACTT  1142

seq1  AAGTAGCTACAACATAAGTAAGTGGAGAATTC  1166
      ||||||||||||||||||||||||||||||||
seq2  AAGTAGCTACAACATAAGTAAGTGGAGAATTC  1174


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