BAC Information

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BAC

Clone NameB6Ng01-300L02
Chromosome13 (Build37)
Map Location 87,009,351 - 87,173,081
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC675662, Cox7c, LOC100042887, LOC100042893
Downstream geneLOC675707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300L02.bB6Ng01-300L02.g
ACCGA095204GA095205
length1,1631,170
definitionB6Ng01-300L02.b B6Ng01-300L02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,171,924 - 87,173,081)(87,009,351 - 87,010,536)
sequence
gaattctttcaaagaatataaaataagaataattattgcacaaaacattt
ttactcaaattatcctaaatttctatatactaaaaaagaagaaaacattt
cacaataagcattaccttaattaaactacaagaaggctttgtatttatca
atatatcatcaaacatatactttatattaaagagtgattaaaattcattg
atttttatgattagtttatgatgtcatttaactccagaatttttcctttt
agaattttctatatgtaccatatcagagttgtgtcataacatgaaaaata
tatatgagtatttcagttatctttggatttgccatgtataatttgatggt
ttttactcattatgaacgaagagatttcaattaacattgctaagatagta
atataaagcaaagggcataatcagatatcacgaaactagtaaatgggaaa
gccagttatgcaagccatgtctcattacgaagcctgatattctttatgga
ggaatttgtaaataactaactgaacaaaaagtaatctgaaagccttataa
attatgataaccttagttgccccattatttaaaatagttcaacaattaaa
taaaaagatttgaaaatatctaaggtgagcggatattttcctaatactaa
tagagagggaatgccaaaattagtatatagttataactttacattatcat
tagacatgtatcctctttgttcccccatttttactcttgacttattatca
tgtattatattcaatgttttcttattcttttttctcttaatcttcttaat
ttctaaggatgtaccagtacagtgtcatcagcagtgatgtataaaaaagt
atctcttagatggatattgaagaacattttcctgtccaagatgagcaggt
gtctctgcaaatacaaccttctccacttattccaaacttgaatacataat
catgaacataatcgtgacaagatcacacatattgttttgatgtgagccaa
tgaacctgtggcagacaaaacatggggtaaaagtggagaacttgctgtat
actgagaatagaatagaagaacaatgcagtgtttgtgattaatcaataag
atcatgctacatttagcctacttagcaagttttccttaaaaagagatgtg
aactcaagttatg

gaattcaatcctaacacttaaattcatggcaatatttaattttaggattg
tgtttaaaatactataaataattagaagtacctactatgatacataaacg
aattctcaaaggcatggtttactgacaccattttaatcactttgaataga
gaagaaatagtttctttattgaaagttaattaaagaataatatatttaca
gagacttgtatttatttatcagagaatgctaaatctgcctggtaactgag
ataacttgtaattaaaagataaattagcatttatatttaattacaaagaa
atctatacctcatttagcatttaattaaaacttgtttaaacaacctagct
gctcagtgaattttcaaatttacataaaattacataataaatagcatttt
aatgtttattaatttagtaattttgacaattttattatgagtctaactat
cctctagcaagttaggttttcatttattatatattttaaaataactgtaa
tattctttttgtcctcatgcctttttctcacatcttagaacatatatttt
ttactgaaaatccctaattctttcttatatctagtagatagggtttgttg
tctaatgaaatgcatagcttcagtttgaaatctctcactctaaaagggat
atacatcttttcatatatgatttgaatgtttatatttccctatagtctca
gttatttgaacatgtagtgccaagtgggtcgcctagttggtgaggtatgt
caagtgtagccttgctggagaaggtatgccattgaacatgatctttaaaa
attgaagtccacctaatacttccagttatctccctttttatttgagagtg
agaactctcagtttccttaagtgctttccatgtcattctgatgtgatctc
ttcttgtcatgaaggacaccaattcctctggatcatcaacgaatatatac
atgcccttttataaatttgccttagtatgatagtttaccacagcacagaa
agtactatgtttcatgtgttgagtattcattttgttttttgggttttttt
gtttgttgttgttttacttataggggatatatttgtcagtctctggcaaa
tccttctcaggaaacagtcatttccagctcctcagtagacctccagcaat
ccactatgcatctgggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_87171924_87173081
seq2: B6Ng01-300L02.b_48_1210 (reverse)

seq1  CATAACTTTGAGTTCACATCTCTTTTT-AGGAAACTTGGCTAAAGTA-GC  48
      |||||| |||||||||||||||||||| ||||||  | ||| ||||| ||
seq2  CATAAC-TTGAGTTCACATCTCTTTTTAAGGAAAACTTGCT-AAGTAGGC  48

seq1  TAAATGTAGCATGATCTTA-TGATTATCCAC-AACACTGCA-TGTTC-TC  94
      ||||||||||||||||||| ||||||  ||| ||||||||| ||||| ||
seq2  TAAATGTAGCATGATCTTATTGATTAATCACAAACACTGCATTGTTCTTC  98

seq1  TA-TCTA-TCTCAGTATACAGCAAGTTCTCCACTTTTACCCCATTGTTTT  142
      || |||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  TATTCTATTCTCAGTATACAGCAAGTTCTCCACTTTTACCCCA-TGTTTT  147

seq1  GTCTGCCACAGGTTCATTGGCTCACATCAAAACAATATGTGTGATCTTGT  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCACAGGTTCATTGGCTCACATCAAAACAATATGTGTGATCTTGT  197

seq1  CACGATTATGTTCATGATTATGTATTCAAGTTTGGAATAAGTGGAGAAGG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATTATGTTCATGATTATGTATTCAAGTTTGGAATAAGTGGAGAAGG  247

seq1  TTGTATTTGCAGAGACACCTGCTCATCTTGGACAGGAAAATGTTCTTCAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTGCAGAGACACCTGCTCATCTTGGACAGGAAAATGTTCTTCAA  297

seq1  TATCCATCTAAGAGATACTTTTTTATACATCACTGCTGATGACACTGTAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATCTAAGAGATACTTTTTTATACATCACTGCTGATGACACTGTAC  347

seq1  TGGTACATCCTTAGAAATTAAGAAGATTAAGAGAAAAAAGAATAAGAAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACATCCTTAGAAATTAAGAAGATTAAGAGAAAAAAGAATAAGAAAA  397

seq1  CATTGAATATAATACATGATAATAAGTCAAGAGTAAAAATGGGGGAACAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATATAATACATGATAATAAGTCAAGAGTAAAAATGGGGGAACAA  447

seq1  AGAGGATACATGTCTAATGATAATGTAAAGTTATAACTATATACTAATTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATACATGTCTAATGATAATGTAAAGTTATAACTATATACTAATTT  497

seq1  TGGCATTCCCTCTCTATTAGTATTAGGAAAATATCCGCTCACCTTAGATA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTCCCTCTCTATTAGTATTAGGAAAATATCCGCTCACCTTAGATA  547

seq1  TTTTCAAATCTTTTTATTTAATTGTTGAACTATTTTAAATAATGGGGCAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAATCTTTTTATTTAATTGTTGAACTATTTTAAATAATGGGGCAA  597

seq1  CTAAGGTTATCATAATTTATAAGGCTTTCAGATTACTTTTTGTTCAGTTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTTATCATAATTTATAAGGCTTTCAGATTACTTTTTGTTCAGTTA  647

seq1  GTTATTTACAAATTCCTCCATAAAGAATATCAGGCTTCGTAATGAGACAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTACAAATTCCTCCATAAAGAATATCAGGCTTCGTAATGAGACAT  697

seq1  GGCTTGCATAACTGGCTTTCCCATTTACTAGTTTCGTGATATCTGATTAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCATAACTGGCTTTCCCATTTACTAGTTTCGTGATATCTGATTAT  747

seq1  GCCCTTTGCTTTATATTACTATCTTAGCAATGTTAATTGAAATCTCTTCG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTGCTTTATATTACTATCTTAGCAATGTTAATTGAAATCTCTTCG  797

seq1  TTCATAATGAGTAAAAACCATCAAATTATACATGGCAAATCCAAAGATAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATGAGTAAAAACCATCAAATTATACATGGCAAATCCAAAGATAA  847

seq1  CTGAAATACTCATATATATTTTTCATGTTATGACACAACTCTGATATGGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATACTCATATATATTTTTCATGTTATGACACAACTCTGATATGGT  897

seq1  ACATATAGAAAATTCTAAAAGGAAAAATTCTGGAGTTAAATGACATCATA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAGAAAATTCTAAAAGGAAAAATTCTGGAGTTAAATGACATCATA  947

seq1  AACTAATCATAAAAATCAATGAATTTTAATCACTCTTTAATATAAAGTGT  992
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AACTAATCATAAAAATCAATGAATTTTAATCACTCTTTAATATAAAGTAT  997

seq1  ATGTTTGATGATATATTGATAAATACAAAGCCTTCTTGTAGTTTAATTAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGATGATATATTGATAAATACAAAGCCTTCTTGTAGTTTAATTAA  1047

seq1  GGTAATGCTTATTGTGAAATGTTTTCTTCTTTTTTAGTATATAGAAATTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGCTTATTGTGAAATGTTTTCTTCTTTTTTAGTATATAGAAATTT  1097

seq1  AGGATAATTTGAGTAAAAATGTTTTGTGCAATAATTATTCTTATTTTATA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAATTTGAGTAAAAATGTTTTGTGCAATAATTATTCTTATTTTATA  1147

seq1  TTCTTTGAAAGAATTC  1158
      ||||||||||||||||
seq2  TTCTTTGAAAGAATTC  1163


seq1: chr13_87009351_87010536
seq2: B6Ng01-300L02.g_66_1235

seq1  GAATTCAATCCTAACACTTAAATTCATGGCAATATTTAATTTTAGGATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCTAACACTTAAATTCATGGCAATATTTAATTTTAGGATTG  50

seq1  TGTTTAAAATACTATAAATAATTAGAAGTACCTACTATGATACATAAACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAATACTATAAATAATTAGAAGTACCTACTATGATACATAAACG  100

seq1  AATTCTCAAAGGCATGGTTTACTGACACCATTTTAATCACTTTGAATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCAAAGGCATGGTTTACTGACACCATTTTAATCACTTTGAATAGA  150

seq1  GAAGAAATAGTTTCTTTATTGAAAGTTAATTAAAGAATAATATATTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATAGTTTCTTTATTGAAAGTTAATTAAAGAATAATATATTTACA  200

seq1  GAGACTTGTATTTATTTATCAGAGAATGCTAAATCTGCCTGGTAACTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTGTATTTATTTATCAGAGAATGCTAAATCTGCCTGGTAACTGAG  250

seq1  ATAACTTGTAATTAAAAGATAAATTAGCATTTATATTTAATTACAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTGTAATTAAAAGATAAATTAGCATTTATATTTAATTACAAAGAA  300

seq1  ATCTATACCTCATTTAGCATTTAATTAAAACTTGTTTAAACAACCTAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATACCTCATTTAGCATTTAATTAAAACTTGTTTAAACAACCTAGCT  350

seq1  GCTCAGTGAATTTTCAAATTTACATAAAATTACATAATAAATAGCATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGAATTTTCAAATTTACATAAAATTACATAATAAATAGCATTTT  400

seq1  AATGTTTATTAATTTAGTAATTTTGACAATTTTATTATGAGTCTAACTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTATTAATTTAGTAATTTTGACAATTTTATTATGAGTCTAACTAT  450

seq1  CCTCTAGCAAGTTAGGTTTTCATTTATTATATATTTTAAAATAACTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGCAAGTTAGGTTTTCATTTATTATATATTTTAAAATAACTGTAA  500

seq1  TATTCTTTTTGTCCTCATGCCTTTTTCTCACATCTTAGAACATATATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTTTGTCCTCATGCCTTTTTCTCACATCTTAGAACATATATTTT  550

seq1  TTACTGAAAATCCCTAATTCTTTCTTATATCTAGTAGATAGGGTTTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAAAATCCCTAATTCTTTCTTATATCTAGTAGATAGGGTTTGTTG  600

seq1  TCTAATGAAATGCATAGCTTCAGTTTGAAATCTCTCACTCTAAAAGGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGAAATGCATAGCTTCAGTTTGAAATCTCTCACTCTAAAAGGGAT  650

seq1  ATACATCTTTTCATATATGATTTGAATGTTTATATTTCCCTATAGTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCTTTTCATATATGATTTGAATGTTTATATTTCCCTATAGTCTCA  700

seq1  GTTATTTGAACATGTAGTGCCAAGTGGGTCGCCTAGTTGGTGAGGTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTGAACATGTAGTGCCAAGTGGGTCGCCTAGTTGGTGAGGTATGT  750

seq1  CAAGTGTAGCCTTGCTGGAGAAGGTATGCCATTGAACATGATCTTTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTAGCCTTGCTGGAGAAGGTATGCCATTGAACATGATCTTTAAAA  800

seq1  ATTGAAGTCCACCTAATACTTCCAGTTATCTCCCTTTTTATTTGAGAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGTCCACCTAATACTTCCAGTTATCTCCCTTTTTATTTGAGAGTG  850

seq1  AGAACTCTCAGTTTCCTTAAGTGCTTTCCATGTCATTCTGATGTGATCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTCAGTTTCCTTAAGTGCTTTCCATGTCATTCTGATGTGATCTC  900

seq1  TTCTTGTCATGAAGGACACCAATTCCTCTGGATCATCAACGAATATATAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTCATGAAGGACACCAATTCCTCTGGATCATCAACGAATATATAC  950

seq1  ATGCCCTTTTATAAA-TTGCCTTAGTAATGATAGTTTACCACAGCAACAG  999
      ||||||||||||||| |||||||||| |||||||||||||||||| ||||
seq2  ATGCCCTTTTATAAATTTGCCTTAGT-ATGATAGTTTACCACAGC-ACAG  998

seq1  AAAAGTAACTATGTTTCATGTGTTGGAAGTATTCATTTTGTTTTTTGGGT  1049
       ||||| ||||||||||||||||||  |||||||||||||||||||||||
seq2  -AAAGT-ACTATGTTTCATGTGTTG--AGTATTCATTTTGTTTTTTGGGT  1044

seq1  TTTTTTGTTTGTTTGTTTGTTTTTTAACTTTATAGGGAATTATTATTTGT  1099
      |||||||||||     ||||| ||| || |||||||| ||   |||||||
seq2  TTTTTTGTTTG-----TTGTTGTTTTAC-TTATAGGGGAT--ATATTTGT  1086

seq1  CAGTCTCTGGCAGAGCC-TCTCAGGAGACAGTCATATCAGGCTTCCTTCA  1148
      |||||||||||| | || |||||||| |||||||| ||  |||  | |||
seq2  CAGTCTCTGGCAAATCCTTCTCAGGAAACAGTCATTTCCAGCT--CCTCA  1134

seq1  GTAAGCACTTCCAGC-ATCCACATTAGCATCTGGGTTTG  1186
      |||   || |||||| |||||| |  |||||||||||||
seq2  GTA--GACCTCCAGCAATCCAC-TATGCATCTGGGTTTG  1170


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