BAC Information

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BAC

Clone NameB6Ng01-300M23
Chromosome13 (Build37)
Map Location 6,179,243 - 6,300,301
singlet/doubletdoublet
Overlap geneLOC100039388
Upstream gene1700016G22Rik, Klf6
Downstream geneLOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300M23.bB6Ng01-300M23.g
ACCGA095290GA095291
length1,1271,094
definitionB6Ng01-300M23.b B6Ng01-300M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,299,192 - 6,300,301)(6,179,243 - 6,180,351)
sequence
gaattcacaggtattctcttgcctttgcctccctgctgctgggattaaaa
gtgtgcacaaccatccctctttaaaacctattctttttaaaattagattt
attcattttatttttgattgttttgcctatatgtatgcatatgcactaca
tgattgtctggtgctctcaaaggtcagatgtaggcaatggatcccctgga
actgaagttacagacagctgtgagctgccaaatgggagctgagaatggaa
cctgggtcctctgcagaagcaagtagtgcctcataattcattcttaagta
aaaatatgattgataaatactttctaagatctgtataaatacagtttttg
caggatcaaacacaaaatttgggagaaactgggtgaaaaattcccaaata
gttaccatcctaccaaaccagtcaaatgatttgcttaaattgtggtagag
ctactaatttggaacatctactaatttaatagaatgtgggtgttaaaagc
tacttgttaattcaggaataactggaatattgttcacagctaagaagaaa
aataagttataaagtacaattttgttgttaagaatactgatgggggatgg
agagatggtccagtggttaagagcactggttgcttttccagaggactcag
gttcaatttccagcatccatgtggtagcgttacaaccttctataaaatcc
agtttcaggaagaccaatatcctcatttggcctccaagggcactgtacac
atttggtacataatacatgcaggtaaaacacataaaataaatataagtat
tttaaaataataaaaaaagagaagttctctttgtaaattgattcttctta
gaaacccaagaagaagacgctgttgttgttttgttgctgttgttttggtt
ttgcataaatatgtcaatgttcccaacttattaaaagcagagctaaaaga
ggagaatctttttctattctaaaacagccctggtcatcatgttgcccagc
atcagtgaacaagaaaccacaaagaacatgttccaaattctggtccacta
acgatcaccaatcccgaagaaatcccaagctatataatctcagaatgcat
ctgctcaattgcctcctcgttcagaga

gaattcttctgtgatttcaatagggaaagcagaatgcagacttggtctgt
gtaagacatctggtacagttgactttatacctgggaagccactcctgtct
ccttctcccaaaagttctatatagccatatactagggagaaaagggccag
tggtttggaatgaactagacccgggagtttagttggggatatttctgttt
cactttcaaagttgttataaagaaaatcagttctagtctgagacccttct
aggatatttctttagaggtgtcatggtgcccaaaatgtttcctttctctc
tagcctgcatgagaaaaggaccttgggcacacagtgtggtgttaacaggc
agctccatggtttcacagattcctggtccaaaccatttacacagagagag
actcatgtgcacacatatacacagatgaataaacacaatgccatgtatga
acacacatgtgtgctcacatacataaacacacacacgtgtatgtgtttgc
acacaagttacacccaaacctatttttaaaaataagaacaagagttcatt
ggttatgtaatattgaggactgaacacagaccctggcacatgctaggcag
gtactctaccactgagctacacccaggatctcactaattcttcatattgg
cttttttttttttttacactcacaattatttgcttccaagtgactgtgtc
tctcatttcctggtctcataggcctatctgactggcccatggtaaaagac
ccataaaaatttgaagctactggatgagtatccactattacctttagtca
ctttgccatggaaatttctgggatagtggaaaggaatgcaaaagcaaatg
atgcaggaaaatacaccatcagtaaatacaccacagtaaacacaccatca
gtaagcacacaagccattgtttcctgtgcaagtctgactcactgcttact
tagtgcagcacagctagtagatcaattctgtacactggctgttatatggg
gtgacttcttctatttttttttttaaataatgtagcatcacaaacagttc
cgtagtagaaatttgaggactggaaagtttactgaagttcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_6299192_6300301
seq2: B6Ng01-300M23.b_47_1173 (reverse)

seq1  TCTCTGGAACGAG--AGCAA-TGAGCAGATGCATCCTGAGAT--TATAGC  45
      ||||| |||||||   |||| ||||||||||||| |||||||  ||||||
seq2  TCTCT-GAACGAGGAGGCAATTGAGCAGATGCATTCTGAGATTATATAGC  49

seq1  -TGGGATT--CTCGGGA-TGGTGATCGTTAGT-GACCAG-ATTTGG-ACA  88
       |||||||   |||||| |||||||||||||| |||||| |||||| |||
seq2  TTGGGATTTCTTCGGGATTGGTGATCGTTAGTGGACCAGAATTTGGAACA  99

seq1  TG-TCTTTGTG--TTC-TGGTCACTGATGCTGGGCAACATGATGACCA-G  133
      || ||||||||  ||| || |||||||||||||||||||||||||||| |
seq2  TGTTCTTTGTGGTTTCTTGTTCACTGATGCTGGGCAACATGATGACCAGG  149

seq1  GCTG-TGTAGAATAGAAAAAGATTCTCCTCTTTTAGCTCTGCTTTTAATA  182
      |||| | |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTAGAATAGAAAAAGATTCTCCTCTTTTAGCTCTGCTTTTAATA  199

seq1  AGTTGGGAACATTGACATATTTATGCAAAACCAAAACAACAGCAACAAAA  232
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGAACATTGACATATTTATGCAAAACCAAAACAACAGCAACAAAA  249

seq1  CAACAACAGCGTCTTCTTCTTGGGTTTCTAAGAAGAATCAATTTACAAAG  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAGCGTCTTCTTCTTGGGTTTCTAAGAAGAATCAATTTACAAAG  299

seq1  AGAACTTCTCTTTTTTTATTATTTTAAAATACTTATATTTATTTTATGTG  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCTCTTTTTTTATTATTTTAAAATACTTATATTTATTTTATGTG  349

seq1  TTTTACCTGCATGTATTATGTACCAAATGTGTACAGTGCCCTTGGAGGCC  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTGCATGTATTATGTACCAAATGTGTACAGTGCCCTTGGAGGCC  399

seq1  AAATGAGGATATTGGTCTTCCTGAAACTGGATTTTATAGAAGGTTGTAAC  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGATATTGGTCTTCCTGAAACTGGATTTTATAGAAGGTTGTAAC  449

seq1  GCTACCACATGGATGCTGGAAATTGAACCTGAGTCCTCTGGAAAAGCAAC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCACATGGATGCTGGAAATTGAACCTGAGTCCTCTGGAAAAGCAAC  499

seq1  CAGTGCTCTTAACCACTGGACCATCTCTCCATCCCCCATCAGTATTCTTA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCTTAACCACTGGACCATCTCTCCATCCCCCATCAGTATTCTTA  549

seq1  ACAACAAAATTGTACTTTATAACTTATTTTTCTTCTTAGCTGTGAACAAT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAATTGTACTTTATAACTTATTTTTCTTCTTAGCTGTGAACAAT  599

seq1  ATTCCAGTTATTCCTGAATTAACAAGTAGCTTTTAACACCCACATTCTAT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGTTATTCCTGAATTAACAAGTAGCTTTTAACACCCACATTCTAT  649

seq1  TAAATTAGTAGATGTTCCAAATTAGTAGCTCTACCACAATTTAAGCAAAT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAGTAGATGTTCCAAATTAGTAGCTCTACCACAATTTAAGCAAAT  699

seq1  CATTTGACTGGTTTGGTAGGATGGTAACTATTTGGGAATTTTTCACCCAG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGACTGGTTTGGTAGGATGGTAACTATTTGGGAATTTTTCACCCAG  749

seq1  TTTCTCCCAAATTTTGTGTTTGATCCTGCAAAAACTGTATTTATACAGAT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCAAATTTTGTGTTTGATCCTGCAAAAACTGTATTTATACAGAT  799

seq1  CTTAGAAAGTATTTATCAATCATATTTTTACTTAAGAATGAATTATGAGG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAAGTATTTATCAATCATATTTTTACTTAAGAATGAATTATGAGG  849

seq1  CACTACTTGCTTCTGCAGAGGACCCAGGTTCCATTCTCAGCTCCCATTTG  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTTGCTTCTGCAGAGGACCCAGGTTCCATTCTCAGCTCCCATTTG  899

seq1  GCAGCTCACAGCTGTCTGTAACTTCAGTTCCAGGGGATCCATTGCCTACA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCACAGCTGTCTGTAACTTCAGTTCCAGGGGATCCATTGCCTACA  949

seq1  TCTGACCTTTGAGAGCACCAGACAATCATGTAGTGCATATGCATACATAT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTTTGAGAGCACCAGACAATCATGTAGTGCATATGCATACATAT  999

seq1  AGGCAAAACAATCAAAAATAAAATGAATAAATCTAATTTTAAAAAGAATA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAACAATCAAAAATAAAATGAATAAATCTAATTTTAAAAAGAATA  1049

seq1  GGTTTTAAAGAGGGATGGTTGTGCACACTTTTAATCCCAGCAGCAGGGAG  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAAAGAGGGATGGTTGTGCACACTTTTAATCCCAGCAGCAGGGAG  1099

seq1  GCAAAGGCAAGAGAATACCTGTGAATTC  1110
      ||||||||||||||||||||||||||||
seq2  GCAAAGGCAAGAGAATACCTGTGAATTC  1127


seq1: chr13_6179243_6180351
seq2: B6Ng01-300M23.g_67_1160

seq1  GAATTCTTCTGTGATTTCAATAGGGAAAGCAGAATGCAGACTTGGTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGTGATTTCAATAGGGAAAGCAGAATGCAGACTTGGTCTGT  50

seq1  GTAAGACATCTGGTACAGTTGACTTTATACCTGGGAAGCCACTCCTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACATCTGGTACAGTTGACTTTATACCTGGGAAGCCACTCCTGTCT  100

seq1  CCTTCTCCCAAAAGTTCTATATAGCCATATACTAGGGAGAAAAGGGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCCAAAAGTTCTATATAGCCATATACTAGGGAGAAAAGGGCCAG  150

seq1  TGGTTTGGAATGAACTAGACCCGGGAGTTTAGTTGGGGATATTTCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGAATGAACTAGACCCGGGAGTTTAGTTGGGGATATTTCTGTTT  200

seq1  CACTTTCAAAGTTGTTATAAAGAAAATCAGTTCTAGTCTGAGACCCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCAAAGTTGTTATAAAGAAAATCAGTTCTAGTCTGAGACCCTTCT  250

seq1  AGGATATTTCTTTAGAGGTGTCATGGTGCCCAAAATGTTTCCTTTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTTCTTTAGAGGTGTCATGGTGCCCAAAATGTTTCCTTTCTCTC  300

seq1  TAGCCTGCATGAGAAAAGGACCTTGGGCACACAGTGTGGTGTTAACAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGCATGAGAAAAGGACCTTGGGCACACAGTGTGGTGTTAACAGGC  350

seq1  AGCTCCATGGTTTCACAGATTCCTGGTCCAAACCATTTACACAGAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCATGGTTTCACAGATTCCTGGTCCAAACCATTTACACAGAGAGAG  400

seq1  ACTCATGTGCACACATATACACAGATGAATAAACACAATGCCATGTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGTGCACACATATACACAGATGAATAAACACAATGCCATGTATGA  450

seq1  ACACACATGTGTGCTCACATACATAAACACACACACGTGTATGTGTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATGTGTGCTCACATACATAAACACACACACGTGTATGTGTTTGC  500

seq1  ACACAAGTTACACCCAAACCTATTTTTAAAAATAAGAACAAGAGTTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTTACACCCAAACCTATTTTTAAAAATAAGAACAAGAGTTCATT  550

seq1  GGTTATGTAATATTGAGGACTGAACACAGACCCTGGCACATGCTAGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGTAATATTGAGGACTGAACACAGACCCTGGCACATGCTAGGCAG  600

seq1  GTACTCTACCACTGAGCTACACCCAGGATCTCACTAATTCTTCATATTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTACCACTGAGCTACACCCAGGATCTCACTAATTCTTCATATTGG  650

seq1  CTTTTTTTTTTTTTTACACTCACAATTATTTGCTTCCAAGTGACTGTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTTACACTCACAATTATTTGCTTCCAAGTGACTGTGTC  700

seq1  TCTCATTTCCTGGTCTCATAGGCCTATCTGACTGGCCCATGGTAAAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTCCTGGTCTCATAGGCCTATCTGACTGGCCCATGGTAAAAGAC  750

seq1  CCATAAAAATTTGAAGCTACTGGATGAGTATCCACTATTACCTTTAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAAATTTGAAGCTACTGGATGAGTATCCACTATTACCTTTAGTCA  800

seq1  CTTTGCCATGGAAATTTCTGGGATAGTGGAAAGGAATGCAAAAGCAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCATGGAAATTTCTGGGATAGTGGAAAGGAATGCAAAAGCAAATG  850

seq1  ATGCAGGAAAATACACCATCAGTAAATACACCACAGTAAACACACCATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGAAAATACACCATCAGTAAATACACCACAGTAAACACACCATCA  900

seq1  GTAAGCACCACAAGCCATTGTTTCCCTGTGCAAGGTCTGACTCAACTGCT  950
      ||||||| ||||||||||||||| ||||||||| ||||||||| ||||||
seq2  GTAAGCA-CACAAGCCATTGTTT-CCTGTGCAA-GTCTGACTC-ACTGCT  946

seq1  TACTTAGTGCAGCACAGCTAAGTTAGATCCAAATTCTGTACACTGGCCTT  1000
      ||||||||||||||||||||   ||||||  ||||||||||||||||   
seq2  TACTTAGTGCAGCACAGCTA--GTAGATC--AATTCTGTACACTGGC---  989

seq1  GGTTATATGGGGTGACTTCTTCTATTTTTTTTTTAAATAAATGTAGCATC  1050
       ||||||||||||||||||||||||||||||||| ||  |||||||||||
seq2  TGTTATATGGGGTGACTTCTTCTATTTTTTTTTTTAAATAATGTAGCATC  1039

seq1  AC-AACAGTCCCCGTAGTTAGATATTTGGAAGACT-GAAAGTTTACTGAA  1098
      || ||||||  |||||| |||| |||| || |||| ||||||||||||||
seq2  ACAAACAGT-TCCGTAG-TAGAAATTT-GAGGACTGGAAAGTTTACTGAA  1086

seq1  AGTTTTCTTCC  1109
          |||||||
seq2  ---GTTCTTCC  1094


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