BAC Information

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BAC

Clone NameB6Ng01-300O01
Chromosome13 (Build37)
Map Location 27,329,020 - 27,329,551
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1
Downstream genePrl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300O01.bB6Ng01-300O01.g
ACCGA095338GA095339
length7091,173
definitionB6Ng01-300O01.b B6Ng01-300O01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacaggaagatccacagagtcaagtaatctggacccgttagggc
tctcagagactgaaccatcaacctaagagcatagagtagttggacctagt
tccctgcatacatgtattagatgtgcagcctagtcttcatgaaggactcc
caacaactggagagaaggctgcctctaaagctgttgcctggatctgcatt
ctattcccttaactggactgccttatctggcttcagggggagaggattca
cctaaccctatagagacttgatgtgccatggttgcagggatatccaggta
gtcctccagtctgaatagaaaaagggagggggtggagagagggactgtgt
gaggggtgactgaaagtggggccagatatccagatgtaaagtgaattaat
acatacccatacacatacatacatacatacatacatacatacatacatat
acatacatacatacatacatacatacatacataaaataaataaatgggaa
aaagaaaaaccttccctcttggtgtgaacaagtttcacatggatgttagg
tatttaaaggggagttggtgaaacagcagagagtctcaacaaagagaaac
tttctaccacataggaaagctaattatgcaaaagaagaactcattatatt
cagaatatatctgaacttgactatttaattaggtgttttttaatcccaca
cattttaaa
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
aaatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttttacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
ccagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctaggagaagtagccaggagctaaagggatctgcacctata
ggtgaacacattatgagctaaccagtacccggagctcttgactctagctg
catatatattcaaagattgactatccgcattcactgggaaagaaaaggca
ttgtacttgccactttaattgccagtacatggaaatccaagcaaaaaggg
aagtgttggccacaggggaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27329020_27329551
seq2: B6Ng01-300O01.b_226_755 (reverse)

seq1  TTTAAAATGTGTGGGATTAAAAAACACCTAATTAATTTAGTCAAGTTCAG  50
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TTTAAAATGTGTGGGATTAAAAAACACCTAATTAA-ATAGTCAAGTTCAG  49

seq1  ATATTTTCTGAATATATTGAGTTCTTCTTTTTGCATAATTAGCTTTCCTA  100
      |||| ||||||||||| |||||||||| ||||||||||||||||||||||
seq2  ATATATTCTGAATATAATGAGTTCTTC-TTTTGCATAATTAGCTTTCCTA  98

seq1  TGTGGTAGAAAGTTTCTCTTTGTTTAGACTCTCTGCTGTTTCACCAACTC  150
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTGGTAGAAAGTTTCTCTTTGTTGAGACTCTCTGCTGTTTCACCAACTC  148

seq1  CCCTTTAAATACCTAACATCCATGTGAAACTTGTTCACACCAAGAGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAAATACCTAACATCCATGTGAAACTTGTTCACACCAAGAGGGAA  198

seq1  GGTTTTTCTTTTTCCCATTTATTTATTTTATGTATGTATGTATGTATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCTTTTTCCCATTTATTTATTTTATGTATGTATGTATGTATGTA  248

seq1  TGTATGTATGTATATGTATGTATGTATGTATGTATGTATGTATGTATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTATGTATATGTATGTATGTATGTATGTATGTATGTATGTATGTG  298

seq1  TATGGGTATGTATTAATTCACTTTACATCTGGATATCTGGCCCCACTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTATGTATTAATTCACTTTACATCTGGATATCTGGCCCCACTTTC  348

seq1  AGTCACCCCTCACACAGTCCCTCTCTCCACCCCCTCCCTTTTTCTATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCCCTCACACAGTCCCTCTCTCCACCCCCTCCCTTTTTCTATTCA  398

seq1  GACTGGAGGACTACCTGGATATCCCTGCAACCATGGCACATCAAGTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGGACTACCTGGATATCCCTGCAACCATGGCACATCAAGTCTCT  448

seq1  ATAGGGTTAGGTGAATCCTCTCCCCCTGAAGCCAGATAAGGCAGTCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTTAGGTGAATCCTCTCCCCCTGAAGCCAGATAAGGCAGTCCAGT  498

seq1  TAAGGGAATAGAATGCAGATCCAGGCAACAGC  532
      ||||||||||||||||||||||||||||||||
seq2  TAAGGGAATAGAATGCAGATCCAGGCAACAGC  530