BAC Information

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BAC

Clone NameB6Ng01-300O23
Chromosome1 (Build37)13 (Build37)
Map Location 49,438,569 - 49,438,78982,498,413 - 82,499,559
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik
Downstream geneLOC627430, LOC100041981, EG666962, EG666970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300O23.bB6Ng01-300O23.g
ACCGA095381GA095382
length1,0241,163
definitionB6Ng01-300O23.b B6Ng01-300O23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,438,569 - 49,438,789)(82,498,413 - 82,499,559)
sequence
gaattcatgaagttcataagacagaactagaaaatatcatcctgagtgag
gtaacccaatcacaaacgaacacacattgtatgtgctcactgataagtgg
atataagccaagaagttcagaatacccaagatacaattcacaaaacacat
gaagctcaagaagaaggaagatcatagtgtggctactttggtccttctta
gaaggggatcaaaatacccatgggaggaaatacagagataatgtttggag
cagaaattgaaagaaaggtcatccagtaactgtcccacttggggatccat
cccatgtacagttaccaaacccagacactattgtggatgccaacaagtac
ttgctgacaggagtctaatatagctgtctggtgagagactctgccacttc
ctgacaaatatagaagtgaaggctcacagtcatccattagacagggtccc
caatggaggagctagaaaaaggagccgtagaaggaaagataatataaacc
aaccattaccctagagctcccagggactaaatcaccaactaaagagtaca
caaggagggactcaaggcttcagcttcataagtagcagaggatggccttg
tgggacgtcaatgagaggagaggcccttggccttgtgaagacttgatgcc
cagtgtagtggaataacaggacagggaaacaagagtgagtgggttaatga
acaggggcaggaggctgggataggggattttttgaaggtaaatgaggaaa
gtggataaaatttgaaatgtaaataaagaaaaaagctaataaaatgaaaa
aagaagacacttttgaaattaaaatttcttcagatttactcacaaaaaac
tatctccaagcaaatagttttcttcattttcttctatgtatatatgatag
taaatagtaaataaatcaatttatttcagtacttaacttctgagataaag
tacatttttcagtgaataaatcataccaaatagtaatttcatactgtttt
gctaaatagctactgaaatcttac

gaattcagtccagggatataaatctgggaattctgagctcaagaaagcct
ctggatcaggtccaagtgtgtcttcatttatccagcatcccatgaacttg
aaagacaaattttagctgtgctccaccccaaacaaacaatggagcactct
aattaggaagcgaaagcactggaaatagccccatagtccttggttcatgg
caaaactaagggataaaggtaggaaggggcagggtgggagcttccttaat
taggtcatgagtctgctctattcctccacctattgttctcagtgatccta
tgtgaagtggatgtaaaggaatgtgcctgcttaaactatagcaccttgtc
tcagctcacttcctgctcttacaaggctggtagccagggagttgttttga
atattgagcagatgtgatttttttcaatcagtcattctttttttggcaat
gcagtgactttataaacttaataggtttccaatctatatacttccagtaa
gtttctcattctagaagtccacccaaaattaaaatctttttcaggcaatt
cccattaaagttctaagagtctttgctctccatcgcattttctgtctcaa
ttttgtgatttttatcttggggctattacacttgataggtaagagcacat
cctaatttcatctttacagtaaaaatctttatcaactcgtaatacatatt
agagactggtcgcttgttgtgatatggattcagaagagatagtaggaatg
ctcctagaaatatgttagtcatctatatgtgtgatcttcatgccctgcag
agaggtagctcgtgtttgaatacattattttctttcacattcagtaccca
tgaaagagatgtaggtatggcgacactaatgctactgggatctgtgaggt
agagctagggatgcctcctgtccatatcaaagtgcattagggtaaccctg
ttcaacaaaagatttgattatgatcgagaactgcattggctcaataacac
aaaggtggtccttaggcttttggatacttataggaattttttccaggaag
ttataggaaaatattcaaaaatatgactttccactacttcagaatctact
tagaaatacccaggtttaggaatcttagggaataaaaccatattccattg
gctgctactatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_49438569_49438789
seq2: B6Ng01-300O23.b_83_651 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  CCCACAAGGCCATCCTCTGCTACTTATGAAGCTGAAGCCTTGAGTCCCTC  50

seq1  --------------------------------------------------  0
                                                        
seq2  CTTGTGTACTCTTTAGTTGGTGATTTAGTCCCTGGGAGCTCTAGGGTAAT  100

seq1  --------------------------------------------------  0
                                                        
seq2  GGTTGGTTTATATTATCTTTCCTTCTACGGCTCCTTTTTCTAGCTCCTCC  150

seq1  --------------------------------------------------  0
                                                        
seq2  ATTGGGGACCCTGTCTAATGGATGACTGTGAGCCTTCACTTCTATATTTG  200

seq1  --------------------------------------------------  0
                                                        
seq2  TCAGGAAGTGGCAGAGTCTCTCACCAGACAGCTATATTAGACTCCTGTCA  250

seq1  --------------------------------------------------  0
                                                        
seq2  GCAAGTACTTGTTGGCATCCACAATAGTGTCTGGGTTTGGTAACTGTACA  300

seq1  ----------CCCACACTGGAGCA--TA------GAGCCTTCATAGGATA  32
                |||  | |||  ||  ||      || | ||| |    | 
seq2  TGGGATGGATCCCCAAGTGGGACAGTTACTGGATGACCTTTCTT----TC  346

seq1  AAGGGCCTCTCCTCCCATTATGTCCAACTAGGCCATCC------TCTGTT  76
      ||   |  ||||   |||||| ||    ||   | |||      | | ||
seq2  AATTTCTGCTCCAAACATTATCTC--TGTATTTCCTCCCATGGGTATTTT  394

seq1  G----CATATTCAG-TGGAGCCATGAATCC-CACCATG------------  108
      |    | |  | ||  ||| | | | | || ||| |||            
seq2  GATCCCCTTCTAAGAAGGACCAAAGTAGCCACACTATGATCTTCCTTCTT  444

seq1  -----------TGTGCTCTTTGGTTGGTAGTTTAG--TCTCTGAGAGCTC  145
                 |||| | | ||  | |||  || |    ||||| |  ||
seq2  CTTGAGCTTCATGTGTTTTGTGAATTGTATCTTGGGTATTCTGA-ACTTC  493

seq1  TGGGCTAATATCCACTTATCAGTGAGTACATATTGTGTGAGTTCTTTTGT  195
      | |||| ||||||||||||||||||| |||||   |||| |||| |||||
seq2  TTGGCTTATATCCACTTATCAGTGAGCACATACAATGTGTGTTCGTTTGT  543

seq1  GATTGGGTTACCTCACTCAGGATGAT  221
      ||||||||||||||||||||||||||
seq2  GATTGGGTTACCTCACTCAGGATGAT  569


seq1: chr13_82498413_82499559
seq2: B6Ng01-300O23.g_67_1229

seq1  GAATTCAGTCCAGGGATATAAATCTGGGAATTCTGAGCTCAAGAAAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCAGGGATATAAATCTGGGAATTCTGAGCTCAAGAAAGCCT  50

seq1  CTGGATCAGGTCCAAGTGTGTCTTCATTTATCCAGCATCCCATGAACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCAGGTCCAAGTGTGTCTTCATTTATCCAGCATCCCATGAACTTG  100

seq1  AAAGACAAATTTTAGCTGTGCTCCACCCCAAACAAACAATGGAGCACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAATTTTAGCTGTGCTCCACCCCAAACAAACAATGGAGCACTCT  150

seq1  AATTAGGAAGCGAAAGCACTGGAAATAGCCCCATAGTCCTTGGTTCATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGAAGCGAAAGCACTGGAAATAGCCCCATAGTCCTTGGTTCATGG  200

seq1  CAAAACTAAGGGATAAAGGTAGGAAGGGGCAGGGTGGGAGCTTCCTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTAAGGGATAAAGGTAGGAAGGGGCAGGGTGGGAGCTTCCTTAAT  250

seq1  TAGGTCATGAGTCTGCTCTATTCCTCCACCTATTGTTCTCAGTGATCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCATGAGTCTGCTCTATTCCTCCACCTATTGTTCTCAGTGATCCTA  300

seq1  TGTGAAGTGGATGTAAAGGAATGTGCCTGCTTAAACTATAGCACCTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGTGGATGTAAAGGAATGTGCCTGCTTAAACTATAGCACCTTGTC  350

seq1  TCAGCTCACTTCCTGCTCTTACAAGGCTGGTAGCCAGGGAGTTGTTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCACTTCCTGCTCTTACAAGGCTGGTAGCCAGGGAGTTGTTTTGA  400

seq1  ATATTGAGCAGATGTGATTTTTTTCAATCAGTCATTCTTTTTTTGGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAGCAGATGTGATTTTTTTCAATCAGTCATTCTTTTTTTGGCAAT  450

seq1  GCAGTGACTTTATAAACTTAATAGGTTTCCAATCTATATACTTCCAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGACTTTATAAACTTAATAGGTTTCCAATCTATATACTTCCAGTAA  500

seq1  GTTTCTCATTCTAGAAGTCCACCCAAAATTAAAATCTTTTTCAGGCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCATTCTAGAAGTCCACCCAAAATTAAAATCTTTTTCAGGCAATT  550

seq1  CCCATTAAAGTTCTAAGAGTCTTTGCTCTCCATCGCATTTTCTGTCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAAAGTTCTAAGAGTCTTTGCTCTCCATCGCATTTTCTGTCTCAA  600

seq1  TTTTGTGATTTTTATCTTGGGGCTATTACACTTGATAGGTAAGAGCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGATTTTTATCTTGGGGCTATTACACTTGATAGGTAAGAGCACAT  650

seq1  CCTAATTTCATCTTTACAGTAAAAATCTTTATCAACTCGTAATACATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTTCATCTTTACAGTAAAAATCTTTATCAACTCGTAATACATATT  700

seq1  AGAGACTGGTCGCTTGTTGTGATATGGATTCAGAAGAGATAGTAGGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGGTCGCTTGTTGTGATATGGATTCAGAAGAGATAGTAGGAATG  750

seq1  CTCCTAGAAATATGTTAGTCATCTATATGTGTGATCTTCATGCCCTGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGAAATATGTTAGTCATCTATATGTGTGATCTTCATGCCCTGCAG  800

seq1  AGAGGTAGCTCGTGTTTGAATACATTATTTTCTTTCACATTCAGTACCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAGCTCGTGTTTGAATACATTATTTTCTTTCACATTCAGTACCCA  850

seq1  TGAAAGAGATGTAGGTATGGCGACACTAATGCTACTGGGATCTGTGAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGATGTAGGTATGGCGACACTAATGCTACTGGGATCTGTGAGGT  900

seq1  AGAGCTAGGGATG-CTCCTGTCCATATCAAAGTGCATTA-GGTAACCCTG  948
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  AGAGCTAGGGATGCCTCCTGTCCATATCAAAGTGCATTAGGGTAACCCTG  950

seq1  TTCAACAAAAGATTTGATTATGATCGAGAACTGCATT-GCTCAAT-ACAC  996
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  TTCAACAAAAGATTTGATTATGATCGAGAACTGCATTGGCTCAATAACAC  1000

seq1  AAAGTTGGTCCTTAAGCTTTT-GATAC-TATA-GAATTTTT--CAAGAAG  1041
      |||| ||||||||| |||||| ||||| |||| ||||||||  || ||||
seq2  AAAGGTGGTCCTTAGGCTTTTGGATACTTATAGGAATTTTTTCCAGGAAG  1050

seq1  TTATAG--AAATAT--CAAAATATGACTT--CACTACCTTCAG-ATCTAC  1084
      ||||||  ||||||   ||||||||||||  ||||| |||||| ||||||
seq2  TTATAGGAAAATATTCAAAAATATGACTTTCCACTA-CTTCAGAATCTAC  1099

seq1  TTAG-AATAACCAGGTTTTAGAATCTTA-GGAATAAAACCATTATTCAGT  1132
      |||| |||| ||||||||  |||||||| |||||||||||||  | || |
seq2  TTAGAAATACCCAGGTTTAGGAATCTTAGGGAATAAAACCATATTCCATT  1149

seq1  GGCTGCTACATATCT  1147
      ||||||||| |||||
seq2  GGCTGCTAC-TATCT  1163


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