BAC Information

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BAC

Clone NameB6Ng01-301B12
Chromosome13 (Build37)
Map Location 13,178,716 - 13,179,244
singlet/doubletsinglet
Overlap geneLOC434483
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2
Downstream geneLOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301B12.bB6Ng01-301B12.g
ACCGA095496GA095497
length1,0481,172
definitionB6Ng01-301B12.b B6Ng01-301B12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctattgaaattctggtgaggattacattgaatttgtagattgttt
tttgtaggatagccattttcacactattaatcctgccaatccatgagcct
gggaggttttccattctctggtgactgcctcagtttctcttttagtgttt
taacattttcactgtgcaatgcttacatttctttttttaattttattcca
agaatttaatttttagtttgaggaaattgttgatggtattgtttccttga
tttctcatttttttttccatttggtaaatagaaaaggctacaaatttctc
tgtgttactttagtagtctactacattgctggatgtctttgtaagttcta
gggtatttctggtaatgtatttaatgttttttatataaagaattatatca
tcttcataagatatttttgacatcttccatttccttagcatcattcactt
actgctttaacaaagactacaagtactatttggaaaaatggaaagactta
ttattttcatatttttggcaatgctgtggatgtttctccatttaatatga
tgattaatgtacattgcctttatcatgttgagacctgttccgcacatcca
tatttttccagaatttttgtcatgaatggattggagattttatcagaagt
attttccagatctaataagataataatggatctgccctttagtcaatttg
tgtgaattttatgtatctttatttacacttgcatctcctagacgaatcta
atttgcaaatattgtatagagaagtttggtatatatgttcatgaaagata
ctggcttatagtttctttttttgttgttgttgttgttggtcttgttttga
tatcaaaataataatgaatttattaaaagaatgtggaatttttcctttac
tttgcagtctaacaagtatagtcatattagttcattgatgtctaggagat
tctgtcctgacctttggattttgggacttttttttccagttgagagtata
ataattactaaaattaggtataatatttctttctcgctatgtatattt
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcaaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagcactaccggaggatgccgcaatacctctcctgggc
atatatccagaagatgtcccaaccgctaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctagaaagaactcagct
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaatgaatttatgaaattcctaggcatat
ggatgggcctggagggcatcatcctgagtgaggtaccccaatcacaaagg
aacttgcacaatatgtactcactgataagtggatattagcccagaaactt
aggatacccaagatataagatacaacttgctaaacgcatgaaattcaaga
acactttaccccttcctagaaatgggaacaaaacacccatgaaaggagtt
acagagacaaaatttggagctgtgacaataggatggaccatctagtgatt
gccatatgcagggatccaactcataatcagcttctaaacgctgacaccat
tgcatacactagcaaaattttgctgaaaggatccagatatagctcactct
tgtgagactatgccggggcctagcaaacactgaagtggatgatcacagtc
agctattgggatgggtcacacggcccccaatgggaggagctagagaaatt
acccaaggaactaaagggaactgcaaccctataggtggaacacatatgac
taaccagtaccccggagcctcttgttctctagctgcatatgtataaaaaa
gatgggccctagtcggcatcactgcaaagaagaggcccatgggaactgca
aacttaatatgcccagtacaggtacgcaaggcctaaaagggattggtggt
ggctgatgggatattgtgcggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_13178716_13179244
seq2: B6Ng01-301B12.b_575_1092

seq1  TGTTTCTCCATTTAATATGATGATTAATGTACATTGCCTTTATCATGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCCATTTAATATGATGATTAATGTACATTGCCTTTATCATGTTG  50

seq1  AGACCTGTTCCGCACATCCATATTTTTCCAGAATTTTTGTCATGAATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGTTCCGCACATCCATATTTTTCCAGAATTTTTGTCATGAATGGA  100

seq1  TTGGAGATTTTATCAGAAGTATTTTCCAGATCTAATAAGATAATAATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATTTTATCAGAAGTATTTTCCAGATCTAATAAGATAATAATGGA  150

seq1  TCTGCCCTTTAGTCAATTTGTGTGAATTTTATGTATCTTTATTTACACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTTTAGTCAATTTGTGTGAATTTTATGTATCTTTATTTACACTT  200

seq1  GCATCTCCTAGACGAATCTAATTTGCAAATATTGTATAGAGAAGTTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCCTAGACGAATCTAATTTGCAAATATTGTATAGAGAAGTTTGGT  250

seq1  ATATATGTTCATGAAAGATACTGGCTTATAGTTTCTTTTTTTGTTGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTTCATGAAAGATACTGGCTTATAGTTTCTTTTTTTGTTGTTGT  300

seq1  TGTTGTTGGTCTTGTTTTGATATCAAAATAATAATGAATTTATTAAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGGTCTTGTTTTGATATCAAAATAATAATGAATTTATTAAAAGA  350

seq1  ATGTGGAATTTTTCCTTTACTTTGCAGTCTAACAAGTAATAGTCATATTA  400
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGTGGAATTTTTCCTTTACTTTGCAGTCTAACAAGT-ATAGTCATATTA  399

seq1  GTTCATTGAATGTCTAGGAGAATTCTGTCCTGACCTTTGGATTTTGGGAC  450
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  GTTCATTG-ATGTCTAGGAG-ATTCTGTCCTGACCTTTGGATTTTGGGAC  447

seq1  TTTTTTTTCCAGTTGAGAGGTAT-ATAATTACTTAAAAATTAAGTAATTA  499
      |||||||||||||||||| |||| |||||||||  ||||||| |||    
seq2  TTTTTTTTCCAGTTGAGA-GTATAATAATTACT--AAAATTAGGTA---T  491

seq1  AATATTTCTTTCTCGCTTAATGTTATATTT  529
      |||||||||||||||||  ||| |||||||
seq2  AATATTTCTTTCTCGCT--ATG-TATATTT  518