BAC Information

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BAC

Clone NameB6Ng01-301K24
Chromosome13 (Build37)
Map Location 23,986,335 - 24,145,506
singlet/doubletdoublet
Overlap geneSlc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16
Upstream geneV1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3
Downstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301K24.bB6Ng01-301K24.g
ACCGA095936GA095937
length1,1071,173
definitionB6Ng01-301K24.b B6Ng01-301K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,144,410 - 24,145,506)(23,986,335 - 23,987,486)
sequence
gaattcttcttcacagtaggttgagtcctcactatcctgcctgtgtgcag
aatgctcctcttggtaccagtgcctgtagtacgaacagttgcgttgggtt
gaaataatgattcgactcactcattcatttactagaattcttcaaggtta
ccctttccacctaaagatgttcattttgttttccaatggatgcctgggaa
gtggggtgggaaggaggtgcccacaggaagctcttgagctcagctctagg
tatcctcctgttttagccaaatttgtatgatttttttaaatgtgctttta
gcgcaaagcttatgtttcaaaaggcaccctgcaatatctttacaccttcc
atctgggtgtgtcccagcactctggaggcagagcccagcaagacttttgt
gacattgaggccaacctagtgtacctaccaagttctagagcaaccatggc
tgcatataccctgtctagcaaaaagtagctacaaaatcccaggggtttat
aataacagatgctataataaacttgttggccattaacttataaaaagtgc
ttacctccagccagacacctccagcttacactctaacctcacttacaaag
ttatcgtaagggtaaatcatcttcttgtagttggaatgtgtgagcctggg
gcagccctttgctgtctggggtcccacttcaggctgctgcacttgaagtc
tgtcacctgttgttcagagagttttcccttcatcttacctggactgggcc
agtccgtgaagtcaaatttgctgtcttactaaggaagtgctaaatgtctg
acaaaagattgctaagtaggataagcactaacaccattgaagttgatatt
aagtttcttggttctagagaatactgtaccctaaagtgttggaaggcaac
ttcttctggaaatttttgattacagtagtatttaaaaaaaaatacttatg
taaaacaacccttgagtcattttagaagtttatagattttcttctggcct
attacagtacattcactttttaaaaccctcaactcttttgatctaactgg
gtcattttattcaataattccagcagaaggtggtccctaacgaggtagtt
aatctgg
gaattcaaaggacaagagacagatctcttatctgctgcttgtctttgttg
gtttggcagaggccagcatgatctctgtgagtttgaggtgagactgtctc
tgaagtgagttctaggctagctagggttacacagtaaaaccctgtctcaa
aataacaagaacaaaatcaagtcaaccaaacagaagaactcaaccacaaa
aacaaaacagaacagaataatgtgctctttcttcgttgttgctccagttg
gggccctgtgtgtgcagtctgactttgcatcccaggttctggggaggatg
catgaatccagagctgctgatatggataacaggcaaaggccaggctcatc
ctagtctgtcaatagcaacctctcaacgcctaggtggcagtgatggttct
cagataggtgcttcagtgtagggacacagaagttggagtgtgtgtttggt
tgagaatcaccaagaaaagctttattttcattttcttaatgacaaattcg
tttattgagaactgaaatttgggaacacacagagagagaacctattatca
ctataaatgcaatgtgctgcttttgagagcagcaatatggaactgcaggc
atgccaactctgacggacatagcggggttttaatttgcttgttttgttct
caagatgcagcctcaacacatagtatggaatatccttgtgccctgagaat
ggacctacaaaatgctgcagatgctcatatattaacacatacatttctca
gggcagggcagggcacagcagggcagaggaaggtgacaagtgaacacctg
gcagtcatatttatctttatgttcacagggaaagacatgtgaaaatggca
ttgataacctttcactggacaagaaagacaacttgagaaaaatcttctag
cctagactaatgtctctgaagtgttgggactcttcagtgacaatctctct
gtgtttgtttcctttttctaacaaaagttagtagaaaaaggagaagctga
gaagccctgaggtcagcattcttataagaaaagaaaaggagggatctcat
ggtactgcagttcctggggagagtccgtgaacactgggagaacagggtaa
gcatgagctctgaaccgcctcagtctcgcacccacttctggtctgaagtg
aattcttttggccactggtgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24144410_24145506
seq2: B6Ng01-301K24.b_47_1153 (reverse)

seq1  CCAGAT--ACTACCT-GT--AGGACCACCTTCTGCTGGGAATTAATG-AT  44
      ||||||  ||||||| ||   ||||||||||||||| ||||||| || ||
seq2  CCAGATTAACTACCTCGTTAGGGACCACCTTCTGCT-GGAATTATTGAAT  49

seq1  AAAATGACCCAG-TAGATCAAAAGAGTTTGAGGG-TTTAAAAAGTG-ATG  91
      |||||||||||| ||||||||||||| ||||||| ||||||||||| |||
seq2  AAAATGACCCAGTTAGATCAAAAGAG-TTGAGGGTTTTAAAAAGTGAATG  98

seq1  TACTGTAATAGGCAGGAAG-AAATCTATAAACTTCTTAAAATGACTC-AG  139
      |||||||||||||  |||| ||||||||||||||| ||||||||||| ||
seq2  TACTGTAATAGGCCAGAAGAAAATCTATAAACTTC-TAAAATGACTCAAG  147

seq1  GGTTGTTTTACATAAGTATTTTTTTTT-AATACTACTGTTAATTCAAAAA  188
      ||||||||||||||||||||||||||| |||||||||||  | |||||||
seq2  GGTTGTTTTACATAAGTATTTTTTTTTAAATACTACTGT--AATCAAAAA  195

seq1  TTTCCAG-AGAAGTTGCCTTCCAACAC-TTAGGGTACAGTATTCTCTAGA  236
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTCCAGAAGAAGTTGCCTTCCAACACTTTAGGGTACAGTATTCTCTAGA  245

seq1  ACCAAG-AACTTAATATCAACTTCAATGGTGTTAGTGCTTATCCTACTTA  285
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAAACTTAATATCAACTTCAATGGTGTTAGTGCTTATCCTACTTA  295

seq1  GCAATCTTTTGTCAGACATTTAGCACTTCCTTAGTAAGACAGCAAATTTG  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTTTTGTCAGACATTTAGCACTTCCTTAGTAAGACAGCAAATTTG  345

seq1  ACTTCACGGACTGGCCCAGTCCAGGTAAGATGAAGGGAAAACTCTCTGAA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACGGACTGGCCCAGTCCAGGTAAGATGAAGGGAAAACTCTCTGAA  395

seq1  CAACAGGTGACAGACTTCAAGTGCAGCAGCCTGAAGTGGGACCCCAGACA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGTGACAGACTTCAAGTGCAGCAGCCTGAAGTGGGACCCCAGACA  445

seq1  GCAAAGGGCTGCCCCAGGCTCACACATTCCAACTACAAGAAGATGATTTA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGGCTGCCCCAGGCTCACACATTCCAACTACAAGAAGATGATTTA  495

seq1  CCCTTACGATAACTTTGTAAGTGAGGTTAGAGTGTAAGCTGGAGGTGTCT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACGATAACTTTGTAAGTGAGGTTAGAGTGTAAGCTGGAGGTGTCT  545

seq1  GGCTGGAGGTAAGCACTTTTTATAAGTTAATGGCCAACAAGTTTATTATA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGGTAAGCACTTTTTATAAGTTAATGGCCAACAAGTTTATTATA  595

seq1  GCATCTGTTATTATAAACCCCTGGGATTTTGTAGCTACTTTTTGCTAGAC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGTTATTATAAACCCCTGGGATTTTGTAGCTACTTTTTGCTAGAC  645

seq1  AGGGTATATGCAGCCATGGTTGCTCTAGAACTTGGTAGGTACACTAGGTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATATGCAGCCATGGTTGCTCTAGAACTTGGTAGGTACACTAGGTT  695

seq1  GGCCTCAATGTCACAAAAGTCTTGCTGGGCTCTGCCTCCAGAGTGCTGGG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAATGTCACAAAAGTCTTGCTGGGCTCTGCCTCCAGAGTGCTGGG  745

seq1  ACACACCCAGATGGAAGGTGTAAAGATATTGCAGGGTGCCTTTTGAAACA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCCAGATGGAAGGTGTAAAGATATTGCAGGGTGCCTTTTGAAACA  795

seq1  TAAGCTTTGCGCTAAAAGCACATTTAAAAAAATCATACAAATTTGGCTAA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTGCGCTAAAAGCACATTTAAAAAAATCATACAAATTTGGCTAA  845

seq1  AACAGGAGGATACCTAGAGCTGAGCTCAAGAGCTTCCTGTGGGCACCTCC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGGATACCTAGAGCTGAGCTCAAGAGCTTCCTGTGGGCACCTCC  895

seq1  TTCCCACCCCACTTCCCAGGCATCCATTGGAAAACAAAATGAACATCTTT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACCCCACTTCCCAGGCATCCATTGGAAAACAAAATGAACATCTTT  945

seq1  AGGTGGAAAGGGTAACCTTGAAGAATTCTAGTAAATGAATGAGTGAGTCG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAAAGGGTAACCTTGAAGAATTCTAGTAAATGAATGAGTGAGTCG  995

seq1  AATCATTATTTCAACCCAACGCAACTGTTCGTACTACAGGCACTGGTACC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTATTTCAACCCAACGCAACTGTTCGTACTACAGGCACTGGTACC  1045

seq1  AAGAGGAGCATTCTGCACACAGGCAGGATAGTGAGGACTCAACCTACTGT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGCATTCTGCACACAGGCAGGATAGTGAGGACTCAACCTACTGT  1095

seq1  GAAGAAGAATTC  1097
      ||||||||||||
seq2  GAAGAAGAATTC  1107

seq1: chr13_23986335_23987486
seq2: B6Ng01-301K24.g_68_1240

seq1  GAATTCAAAGGACAAGAGACAGATCTCTTATCTGCTGCTTGTCTTTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGACAAGAGACAGATCTCTTATCTGCTGCTTGTCTTTGTTG  50

seq1  GTTTGGCAGAGGCCAGCATGATCTCTGTGAGTTTGAGGTGAGACTGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCAGAGGCCAGCATGATCTCTGTGAGTTTGAGGTGAGACTGTCTC  100

seq1  TGAAGTGAGTTCTAGGCTAGCTAGGGTTACACAGTAAAACCCTGTCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGAGTTCTAGGCTAGCTAGGGTTACACAGTAAAACCCTGTCTCAA  150

seq1  AATAACAAGAACAAAATCAAGTCAACCAAACAGAAGAACTCAACCACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAGAACAAAATCAAGTCAACCAAACAGAAGAACTCAACCACAAA  200

seq1  AACAAAACAGAACAGAATAATGTGCTCTTTCTTCGTTGTTGCTCCAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAGAACAGAATAATGTGCTCTTTCTTCGTTGTTGCTCCAGTTG  250

seq1  GGGCCCTGTGTGTGCAGTCTGACTTTGCATCCCAGGTTCTGGGGAGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGTGTGTGCAGTCTGACTTTGCATCCCAGGTTCTGGGGAGGATG  300

seq1  CATGAATCCAGAGCTGCTGATATGGATAACAGGCAAAGGCCAGGCTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATCCAGAGCTGCTGATATGGATAACAGGCAAAGGCCAGGCTCATC  350

seq1  CTAGTCTGTCAATAGCAACCTCTCAACGCCTAGGTGGCAGTGATGGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTGTCAATAGCAACCTCTCAACGCCTAGGTGGCAGTGATGGTTCT  400

seq1  CAGATAGGTGCTTCAGTGTAGGGACACAGAAGTTGGAGTGTGTGTTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGGTGCTTCAGTGTAGGGACACAGAAGTTGGAGTGTGTGTTTGGT  450

seq1  TGAGAATCACCAAGAAAAGCTTTATTTTCATTTTCTTAATGACAAATTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATCACCAAGAAAAGCTTTATTTTCATTTTCTTAATGACAAATTCG  500

seq1  TTTATTGAGAACTGAAATTTGGGAACACACAGAGAGAGAACCTATTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAGAACTGAAATTTGGGAACACACAGAGAGAGAACCTATTATCA  550

seq1  CTATAAATGCAATGTGCTGCTTTTGAGAGCAGCAATATGGAACTGCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATGCAATGTGCTGCTTTTGAGAGCAGCAATATGGAACTGCAGGC  600

seq1  ATGCCAACTCTGACGGACATAGCGGGGTTTTAATTTGCTTGTTTTGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAACTCTGACGGACATAGCGGGGTTTTAATTTGCTTGTTTTGTTCT  650

seq1  CAAGATGCAGCCTCAACACATAGTATGGAATATCCTTGTGCCCTGAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGCAGCCTCAACACATAGTATGGAATATCCTTGTGCCCTGAGAAT  700

seq1  GGACCTACAAAATGCTGCAGATGCTCATATATTAACACATACATTTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTACAAAATGCTGCAGATGCTCATATATTAACACATACATTTCTCA  750

seq1  GGGCAGGGCAGGGCACAGCAGGGCAGAGGAAGGTGACAAGTGAACACCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGCAGGGCACAGCAGGGCAGAGGAAGGTGACAAGTGAACACCTG  800

seq1  GCAGTCATATTTATCTTTATGTTCACAGGG-AAGACATGTGAAAATGGCA  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCAGTCATATTTATCTTTATGTTCACAGGGAAAGACATGTGAAAATGGCA  850

seq1  TTGATAACCTTTCACTGGACAAGAAAGACAACTTGAGAAAAATCTTCTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAACCTTTCACTGGACAAGAAAGACAACTTGAGAAAAATCTTCTAG  900

seq1  CCTAGACTAATGTCTCTGAAGTGTT-GGACTCTTCAGTGAC-ATCTCTCT  947
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  CCTAGACTAATGTCTCTGAAGTGTTGGGACTCTTCAGTGACAATCTCTCT  950

seq1  GTGTTTTGTTTCCTTTTTCT-ACAAAAGTTAGTAGAAAAAGGAGAAGCTG  996
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTG-TTTGTTTCCTTTTTCTAACAAAAGTTAGTAGAAAAAGGAGAAGCTG  999

seq1  AGAAG-CCTGAGGTCAGCATCCTTATA--GAAAGAAA--GA-GGATCCTT  1040
      ||||| |||||||||||||| ||||||   |||||||  || |||||  |
seq2  AGAAGCCCTGAGGTCAGCATTCTTATAAGAAAAGAAAAGGAGGGATC--T  1047

seq1  CATGGGACTGCAG-TCCT-GGGAGAGT-CGTGAACACCTGGAG-ACAGG-  1085
      ||||| ||||||| |||| |||||||| |||||||||  |||| ||||| 
seq2  CATGGTACTGCAGTTCCTGGGGAGAGTCCGTGAACACTGGGAGAACAGGG  1097

seq1  -TAGCATGAGGCTCCTGAAC--GCTCAG--TCGCACCCACTTCT-GTCTG  1129
        ||||||| ||| ||||||   |||||  |||||||||||||| |||||
seq2  TAAGCATGA-GCT-CTGAACCGCCTCAGTCTCGCACCCACTTCTGGTCTG  1145

seq1  -AGTG-ATTCTTTTG--CACT-GTGTAT  1152
       |||| |||||||||  |||| ||||||
seq2  AAGTGAATTCTTTTGGCCACTGGTGTAT  1173