BAC Information

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BAC

Clone NameB6Ng01-302L17
Chromosome13 (Build37)
Map Location 23,652,877 - 23,769,782
singlet/doubletdoublet
Overlap geneHist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e
Upstream geneV1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d
Downstream geneHist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302L17.bB6Ng01-302L17.g
ACCGA096706GA096707
length1,1061,137
definitionB6Ng01-302L17.b B6Ng01-302L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,768,695 - 23,769,782)(23,652,877 - 23,654,011)
sequence
gaattctcatttacaggtctccctactggccaagtatcatattttctgca
tactggagcccacatagtatttactaaatatgataagggtcctcacagta
aggaactctttcttaggatctgatgtagataaggctgagtattggtcagg
acaatggtcttcaggagagaagagcttgcaaaggcattaagaaaagaact
cttggatcataacaaagctatcagcttccatgatcttgatctgactttct
ctgaacacccccaacagaccatctgtacctaacatagcactacatatgac
actaataaaggattgtgttacctaaagttaaaataatgaagagcgtggtt
tgacttaatggcatgaaggaggaactataaaacaacaaaaatgtctttaa
actaggttagctatgcgctttgccatgtatttccagttacctgtactctg
tgagctatcttacacttaaaagggtggaaatggaactctgaaagaagcca
cgataatgatgtcaattcttaattcagtaaagtacaaatatggtttcatt
gtttttaatcctgactgattgtgttttgggatatcttacatattagttta
accaaaacacagcagtacttaaggtataaaaaattatgaatgttgttatt
agaggttgatgacttttgaataatttgaataagatttaactctagctaga
ataaatgtttaattaaaacctggatttttttatccaataatacttaatag
tgaatataaatatacatactgtcttagttaggtttctattgctgtcagca
aatactgtgaccaaaaatcaggttgggaaggaaatatatatatatatata
tatatatatatatatatatacacatatatatacacacatatacatatgca
tatatatgtgggaaaaatgctttgaattcattttaaacatgaaaacaagt
tttaaaataaggtacatgtttgggtataagcaaacaatcacagtaagaaa
aagctgaataatgaaatattcttcattttgttaacttcattaaaaccaag
attaagtattaatatctaataataagatctaataatatttaattaatata
tgttta
gaattccctccactccttttacagctgcttgccaatgccagtggctgaac
ctgctttctgagacactaattaaaagggcagggctattttcttcctagta
tcaattgcttcctctgatatcagttaagatttacaaactctactatctat
ttttaattattatttccttgttaaactctaaaaaaatggttgaactttct
tgagtctttttatagatttttttttcctttttctttttttaagcaaggat
tttgctatgtaacttgctacaataggttggttagctcagagatctgtctc
ccagatgttgggattataggtgtaaaacaccgcaccctactgaattcttt
aaaaccaggaaatcaacggtagtttaatctttatgttaaaccgtccaata
ctattaaactcggctaggtagcagcactggcttgtaataccatctcagtg
gtatactcaattaaatgataaactgagccaggcacagacctttttaatcc
cagataaggaaaacggaaaccatagacaaggagaatcgtgctttaaaaac
aaaactaaccaaaataaggtaaaaataattgaaatgccaacaatgtaaca
agtttgaatggtgaaacaaagtaaaacgttaactctgttggacttttact
gtgtggattgtaacacaatcccaaactgaagtgcgtacctgtttctggct
taaaatggctaccccaactctagttgaaagcatacaagatgaaatgatat
cctgaaagccttgtttccaaaaacaggcagctcagactgcttcgtcgggt
ggtgctcatcattgtcaagaaaggctatatataataggaaaccctggaac
actctacaaacttgtactacagcatctttggtggataatggaggtggctc
ttaaaagagccgttttggtttacgtgccagtgtagaatgcgtgcctatta
agcccgctcgccgcggatacggcgggccagctgggatgtccttgggcatg
atggtgacacgctttggcgtgatggcgccacagatggtgttcctcaaaca
gacccacgagttaggcttcgctcggccttctgcagagccatgacgtcgga
ctctggaagccaggtcgatcctgaagtcctggcgcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23768695_23769782
seq2: B6Ng01-302L17.b_47_1152 (reverse)

seq1  TAAACATATAT--AATAAATAT--ATAGATC-TAT--ATAGATA-TAATA  42
      |||||||||||  | |||||||   |||||| |||   |||||| |||||
seq2  TAAACATATATTAATTAAATATTATTAGATCTTATTATTAGATATTAATA  50

seq1  C-TAATCTTGGTTTTAATGAAGTTA--CAAATGAAG-ATATTTCATTATT  88
      | |||||||||||||||||||||||   |||||||| |||||||||||||
seq2  CTTAATCTTGGTTTTAATGAAGTTAACAAAATGAAGAATATTTCATTATT  100

seq1  CAGCTTTTTCTTACTGTGATTGTTTGCTTATA-CCAAACATGTACCTTA-  136
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  CAGCTTTTTCTTACTGTGATTGTTTGCTTATACCCAAACATGTACCTTAT  150

seq1  TTTAAAACTTGTTTTCATGTTT-AAATG-ATTC-AAGCATTTTT-CCACA  182
      |||||||||||||||||||||| ||||| |||| |||||||||| |||||
seq2  TTTAAAACTTGTTTTCATGTTTAAAATGAATTCAAAGCATTTTTCCCACA  200

seq1  TATATATGCATATGTATATGTGTGTATATATATGTGTATATATATATATA  232
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGCATATGTATATGTGTGTATATATATGTGTATATATATATATA  250

seq1  TATATATATATATATATATATATTTCCTTCCCAACCTGATTTTTGGTCAC  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATTTCCTTCCCAACCTGATTTTTGGTCAC  300

seq1  AGTATTTGCTGACAGCAATAGAAACCTAACTAAGACAGTATGTATATTTA  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGCTGACAGCAATAGAAACCTAACTAAGACAGTATGTATATTTA  350

seq1  TATTCACTATTAAGTATTATTGGATAAAAAAATCCAGGTTTTAATTAAAC  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTATTAAGTATTATTGGATAAAAAAATCCAGGTTTTAATTAAAC  400

seq1  ATTTATTCTAGCTAGAGTTAAATCTTATTCAAATTATTCAAAAGTCATCA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCTAGCTAGAGTTAAATCTTATTCAAATTATTCAAAAGTCATCA  450

seq1  ACCTCTAATAACAACATTCATAATTTTTTATACCTTAAGTACTGCTGTGT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAATAACAACATTCATAATTTTTTATACCTTAAGTACTGCTGTGT  500

seq1  TTTGGTTAAACTAATATGTAAGATATCCCAAAACACAATCAGTCAGGATT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTAAACTAATATGTAAGATATCCCAAAACACAATCAGTCAGGATT  550

seq1  AAAAACAATGAAACCATATTTGTACTTTACTGAATTAAGAATTGACATCA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATGAAACCATATTTGTACTTTACTGAATTAAGAATTGACATCA  600

seq1  TTATCGTGGCTTCTTTCAGAGTTCCATTTCCACCCTTTTAAGTGTAAGAT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGTGGCTTCTTTCAGAGTTCCATTTCCACCCTTTTAAGTGTAAGAT  650

seq1  AGCTCACAGAGTACAGGTAACTGGAAATACATGGCAAAGCGCATAGCTAA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACAGAGTACAGGTAACTGGAAATACATGGCAAAGCGCATAGCTAA  700

seq1  CCTAGTTTAAAGACATTTTTGTTGTTTTATAGTTCCTCCTTCATGCCATT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTTAAAGACATTTTTGTTGTTTTATAGTTCCTCCTTCATGCCATT  750

seq1  AAGTCAAACCACGCTCTTCATTATTTTAACTTTAGGTAACACAATCCTTT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAACCACGCTCTTCATTATTTTAACTTTAGGTAACACAATCCTTT  800

seq1  ATTAGTGTCATATGTAGTGCTATGTTAGGTACAGATGGTCTGTTGGGGGT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGTCATATGTAGTGCTATGTTAGGTACAGATGGTCTGTTGGGGGT  850

seq1  GTTCAGAGAAAGTCAGATCAAGATCATGGAAGCTGATAGCTTTGTTATGA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAGAAAGTCAGATCAAGATCATGGAAGCTGATAGCTTTGTTATGA  900

seq1  TCCAAGAGTTCTTTTCTTAATGCCTTTGCAAGCTCTTCTCTCCTGAAGAC  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAGTTCTTTTCTTAATGCCTTTGCAAGCTCTTCTCTCCTGAAGAC  950

seq1  CATTGTCCTGACCAATACTCAGCCTTATCTACATCAGATCCTAAGAAAGA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCCTGACCAATACTCAGCCTTATCTACATCAGATCCTAAGAAAGA  1000

seq1  GTTCCTTACTGTGAGGACCCTTATCATATTTAGTAAATACTATGTGGGCT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTACTGTGAGGACCCTTATCATATTTAGTAAATACTATGTGGGCT  1050

seq1  CCAGTATGCAGAAAATATGATACTTGGCCAGTAGGGAGACCTGTAAATGA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATGCAGAAAATATGATACTTGGCCAGTAGGGAGACCTGTAAATGA  1100

seq1  GAATTC  1088
      ||||||
seq2  GAATTC  1106

seq1: chr13_23652877_23654011
seq2: B6Ng01-302L17.g_67_1203

seq1  GAATTCCCTCCACTCCTTTTACAGCTGCTTGCCAATGCCAGTGGCTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCCACTCCTTTTACAGCTGCTTGCCAATGCCAGTGGCTGAAC  50

seq1  CTGCTTTCTGAGACACTAATTAAAAGGGCAGGGCTATTTTCTTCCTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCTGAGACACTAATTAAAAGGGCAGGGCTATTTTCTTCCTAGTA  100

seq1  TCAATTGCTTCCTCTGATATCAGTTAAGATTTACAAACTCTACTATCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGCTTCCTCTGATATCAGTTAAGATTTACAAACTCTACTATCTAT  150

seq1  TTTTAATTATTATTTCCTTGTTAAACTCTAAAAAAATGGTTGAACTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTATTATTTCCTTGTTAAACTCTAAAAAAATGGTTGAACTTTCT  200

seq1  TGAGTCTTTTTATAGATTTTTTTTTCCTTTTTCTTTTTTTAAGCAAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTTTTTATAGATTTTTTTTTCCTTTTTCTTTTTTTAAGCAAGGAT  250

seq1  TTTGCTATGTAACTTGCTACAATAGGTTGGTTAGCTCAGAGATCTGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATGTAACTTGCTACAATAGGTTGGTTAGCTCAGAGATCTGTCTC  300

seq1  CCAGATGTTGGGATTATAGGTGTAAAACACCGCACCCTACTGAATTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGTTGGGATTATAGGTGTAAAACACCGCACCCTACTGAATTCTTT  350

seq1  AAAACCAGGAAATCAACGGTAGTTTAATCTTTATGTTAAACCGTCCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGGAAATCAACGGTAGTTTAATCTTTATGTTAAACCGTCCAATA  400

seq1  CTATTAAACTCGGCTAGGTAGCAGCACTGGCTTGTAATACCATCTCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAACTCGGCTAGGTAGCAGCACTGGCTTGTAATACCATCTCAGTG  450

seq1  GTATACTCAATTAAATGATAAACTGAGCCAGGCACAGACCTTTTTAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTCAATTAAATGATAAACTGAGCCAGGCACAGACCTTTTTAATCC  500

seq1  CAGATAAGGAAAACGGAAACCATAGACAAGGAGAATCGTGCTTTAAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAGGAAAACGGAAACCATAGACAAGGAGAATCGTGCTTTAAAAAC  550

seq1  AAAACTAACCAAAATAAGGTAAAAATAATTGAAATGCCAACAATGTAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAACCAAAATAAGGTAAAAATAATTGAAATGCCAACAATGTAACA  600

seq1  AGTTTGAATGGTGAAACAAAGTAAAACGTTAACTCTGTTGGACTTTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAATGGTGAAACAAAGTAAAACGTTAACTCTGTTGGACTTTTACT  650

seq1  GTGTGGATTGTAACACAATCCCAAACTGAAGTGCGTACCTGTTTCTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGATTGTAACACAATCCCAAACTGAAGTGCGTACCTGTTTCTGGCT  700

seq1  TAAAATGGCTACCCCAACTCTAGTTGAAAGCATACAAGATGAAATGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGCTACCCCAACTCTAGTTGAAAGCATACAAGATGAAATGATAT  750

seq1  CCTGAAAGCCTTGTTTCCAAAAACAGGCAGCTCAGACTGCTTCGTCGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGCCTTGTTTCCAAAAACAGGCAGCTCAGACTGCTTCGTCGGGT  800

seq1  GGTGCTCATCATTGTCAAGAAAGGCTATATATAATAGGAAACCCTGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCATCATTGTCAAGAAAGGCTATATATAATAGGAAACCCTGGAAC  850

seq1  ACTCTACAAACTTGTACTACAGCATCTTTGGTGGATAATGGAGGTGGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACAAACTTGTACTACAGCATCTTTGGTGGATAATGGAGGTGGCTC  900

seq1  TTAAAAGAGCCGTTTTGGTTTACGTGCCAGTGTAGAAGGCGTGCCTATTA  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTAAAAGAGCCGTTTTGGTTTACGTGCCAGTGTAGAATGCGTGCCTATTA  950

seq1  AGCCCGCTCGCCGCGGATACGGCGGGCCAGCT-GGATGTCCTTGGGCATG  999
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGCCCGCTCGCCGCGGATACGGCGGGCCAGCTGGGATGTCCTTGGGCATG  1000

seq1  ATGGTGACACGC-TTGGCGTGGATGGCG-CACAGGTTGGTG-TCCTCAAA  1046
      |||||||||||| ||||||| ||||||| |||| | ||||| ||||||||
seq2  ATGGTGACACGCTTTGGCGT-GATGGCGCCACA-GATGGTGTTCCTCAAA  1048

seq1  CAGACCCACGAGGTAGGCCTCGCTC-GCCTCCTGCAGAGCCATGACGGCC  1095
      |||||||||||| ||||| |||||| |||| |||||||||||||||| | 
seq2  CAGACCCACGAGTTAGGCTTCGCTCGGCCTTCTGCAGAGCCATGACGTCG  1098

seq1  GAGCTCTGGAAGCGCAGGTCGGTCTTGAAGTCCT-GCGCGA  1135
      || |||||||||| ||||||| || ||||||||| ||||||
seq2  GA-CTCTGGAAGC-CAGGTCGATCCTGAAGTCCTGGCGCGA  1137