BAC Information

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BAC

Clone NameB6Ng01-302O01
Chromosome13 (Build37)
Map Location 13,114,958 - 13,196,937
singlet/doubletdoublet
Overlap geneLOC434483
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2
Downstream geneLOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302O01.bB6Ng01-302O01.g
ACCGA096815GA096816
length1,1201,082
definitionB6Ng01-302O01.b B6Ng01-302O01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,195,814 - 13,196,937)(13,114,958 - 13,116,028)
sequence
gaattctacttccaagatgcttcaggaacaagaaactgtgaaccagagaa
ctttgcgtccttactctcctcagagctggtagtgtccagattgttcgggt
atcatctgaggacagggtgcacaggcatgcattcgatgaagactcctgct
ttgaacttcagctaaactttctcattgaaccaagtgtcttcagaaaaaaa
aacaatgcctgagaccaattgtatcctgaggtaacctgcttttggacctc
ttcaaacatttgacttgctggcattgggagggtgggacattcagggaaat
tagtctggcttgctgaatcaaagaagggctccaatgacaggcacagaaag
attctcagattgagacacaccttggtttttagaaaaattagatcaaagaa
agttgattaggggaagcagccagaacagagtcttcaagacaagaggtcct
ctgggccttaatatagatccagaggaagccacacaggaaaaataatgtag
gtgtctcaggctaagaaccccattgtggcatccatccatccatccatcca
tccatccatccatccatccatccggtaattggttcctgaaactgaccctt
agtgagacttgctacttggagccatgtgaaaagcaagaggcgaaaggaca
ataaaagcaagtagcacttgggttagggccagcagtattcacaagaagca
gaacttctcttttgaggccacagaggtgtaactcatgggaatgttaaggc
ctgggttgtgggatccaggggtcaccaggcccaggactttcctggcttgc
ggtgggagaagtgggaatgaggactgccctactccctggcctttggcaga
gcagaacctatttagaaaatgttcattctcttaaagaagtaaggccatat
gaactttttaacagacttttaaaaaagctattcaactggggagtctttgg
cttctgtctgccacatctgtatctctgtgtctcccttttttctcttctct
ctattgctctagctcagacccttacgcgttgtacagaatatgacagataa
taagtatttaagcatttaaaataaataaggtagattgttccataagaaag
ctaataattcatctcttttt
gaattctgcactacaaccatcttgtcttggacttttttgttgttgttgct
gggagtctcttaatgtctgcttctattctttaggggttgtggaatgtttt
atatggtttatctgatcttgatttaactttggtacctggtatctgtctag
taaattgtctatttcatccagattttccagttttgttgagtatgggcttt
tgtagtagaatcagataattatttaaattttcttcatttccattgttatg
tctcccttttcatttctgctattattaatttagatactgtttcggtgctc
tctggttagtctggctttgggtttatctatcttgttgatttttctcaaag
aaccactcctggttttgttgattctttgtaaagatctttttgtttctact
tggttgatttcagccctgagtttgattatttcctgctgtctattcctctt
gggtgtataatgcattcattagacataaaaaattggaaggtcaataattc
caataaaacaatgttggaatgtcatttattccccagttattatggcaata
gatctagcgtcacaaatctggcaggtgagcagttattaagcaccatatat
ctcacactctgtatctgtactagaaggtggaaaaagcctcagtatctagt
cattttatgcataggaatgcaccactgagattcactactactctctataa
catatttatgactctatataaatttataaaatggaaacatgcattgaaga
gggaatttaaatttgataatatttttcctccctttagtatttttgtctgg
gaaaaagtcaatgttttctcttaacaaattgcttcttaaaccattgggga
atatagaaaattggagtaacaagtgtttgaacctaggtgccagagacagt
ttgggcttaatgtagtcagaaatacaactttgattaatttatttattcca
gtgatttgtgttgtagagaatttcttatctattgttacctccctagcata
cattaatactgagattttggttaagaaaatgggatctttttcttaggcaa
accttcctaactattcaattttcattcttaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_13195814_13196937
seq2: B6Ng01-302O01.b_46_1165 (reverse)

seq1  AAAAAGAAAGATGAA-TAATAGCTTTTCTTATTGGAACAATCTAACTTTA  49
      ||||||  ||||||| || |||| ||||||| |||||||||||| |||  
seq2  AAAAAG--AGATGAATTATTAGC-TTTCTTA-TGGAACAATCTACCTTAT  46

seq1  TTATTTTAAATGC-TAAATACTTA-TATCTGTCATATTCTGTACAACGCG  97
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  TTATTTTAAATGCTTAAATACTTATTATCTGTCATATTCTGTACAACGCG  96

seq1  T-AGGGTCTGAGCTAGAGCAATAGAGAAGAAAGAGAAAAAAGGGAGACAC  146
      | |||||||||||||||||||||||||   ||||||||||||||||||||
seq2  TAAGGGTCTGAGCTAGAGCAATAGAGA--GAAGAGAAAAAAGGGAGACAC  144

seq1  AAGAGATACAGATGTGGCAGACAGAAGCCAAAGACTCCCCAGTTGAATAG  196
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AGAGATACAGATGTGGCAGACAGAAGCCAAAGACTCCCCAGTTGAATAG  193

seq1  CTTTTTTAAAAGTCTGTTTAAAAAGTTCATATGGCCTTACTTCTTTAAGA  246
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTTTTTAAAAGTCTG-TTAAAAAGTTCATATGGCCTTACTTCTTTAAGA  242

seq1  GAATGAACATTTTCTAAATAGGTTCTGCTCTGCCAAAGGCCAGGGAGTAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAACATTTTCTAAATAGGTTCTGCTCTGCCAAAGGCCAGGGAGTAG  292

seq1  GGCAGTCCTCATTCCCACTTCTCCCACCGCAAGCCAGGAAAGTCCTGGGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCCTCATTCCCACTTCTCCCACCGCAAGCCAGGAAAGTCCTGGGC  342

seq1  CTGGTGACCCCTGGATCCCACAACCCAGGCCTTAACATTCCCATGAGTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGACCCCTGGATCCCACAACCCAGGCCTTAACATTCCCATGAGTTA  392

seq1  CACCTCTGTGGCCTCAAAAGAGAAGTTCTGCTTCTTGTGAATACTGCTGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGTGGCCTCAAAAGAGAAGTTCTGCTTCTTGTGAATACTGCTGG  442

seq1  CCCTAACCCAAGTGCTACTTGCTTTTATTGTCCTTTCGCCTCTTGCTTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAACCCAAGTGCTACTTGCTTTTATTGTCCTTTCGCCTCTTGCTTTT  492

seq1  CACATGGCTCCAAGTAGCAAGTCTCACTAAGGGTCAGTTTCAGGAACCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGCTCCAAGTAGCAAGTCTCACTAAGGGTCAGTTTCAGGAACCAA  542

seq1  TTACCGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATG  592

seq1  CCACAATGGGGTTCTTAGCCTGAGACACCTACATTATTTTTCCTGTGTGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATGGGGTTCTTAGCCTGAGACACCTACATTATTTTTCCTGTGTGG  642

seq1  CTTCCTCTGGATCTATATTAAGGCCCAGAGGACCTCTTGTCTTGAAGACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTGGATCTATATTAAGGCCCAGAGGACCTCTTGTCTTGAAGACT  692

seq1  CTGTTCTGGCTGCTTCCCCTAATCAACTTTCTTTGATCTAATTTTTCTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGGCTGCTTCCCCTAATCAACTTTCTTTGATCTAATTTTTCTAA  742

seq1  AAACCAAGGTGTGTCTCAATCTGAGAATCTTTCTGTGCCTGTCATTGGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGGTGTGTCTCAATCTGAGAATCTTTCTGTGCCTGTCATTGGAG  792

seq1  CCCTTCTTTGATTCAGCAAGCCAGACTAATTTCCCTGAATGTCCCACCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTTGATTCAGCAAGCCAGACTAATTTCCCTGAATGTCCCACCCT  842

seq1  CCCAATGCCAGCAAGTCAAATGTTTGAAGAGGTCCAAAAGCAGGTTACCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGCCAGCAAGTCAAATGTTTGAAGAGGTCCAAAAGCAGGTTACCT  892

seq1  CAGGATACAATTGGTCTCAGGCATTGTTTTTTTTTCTGAAGACACTTGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATACAATTGGTCTCAGGCATTGTTTTTTTTTCTGAAGACACTTGGT  942

seq1  TCAATGAGAAAGTTTAGCTGAAGTTCAAAGCAGGAGTCTTCATCGAATGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAGAAAGTTTAGCTGAAGTTCAAAGCAGGAGTCTTCATCGAATGC  992

seq1  ATGCCTGTGCACCCTGTCCTCAGATGATACCCGAACAATCTGGACACTAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTGCACCCTGTCCTCAGATGATACCCGAACAATCTGGACACTAC  1042

seq1  CAGCTCTGAGGAGAGTAAGGACGCAAAGTTCTCTGGTTCACAGTTTCTTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGAGGAGAGTAAGGACGCAAAGTTCTCTGGTTCACAGTTTCTTG  1092

seq1  TTCCTGAAGCATCTTGGAAGTAGAATTC  1124
      ||||||||||||||||||||||||||||
seq2  TTCCTGAAGCATCTTGGAAGTAGAATTC  1120

seq1: chr13_13114958_13116028
seq2: B6Ng01-302O01.g_67_1148

seq1  GAATTCTGCACTACAACCATCTTGTCTTGGACTTTTTTGTTGTTGTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACTACAACCATCTTGTCTTGGACTTTTTTGTTGTTGTTGCT  50

seq1  GGGAGTCTCTTAATGTCTGCTTCTATTCTTTAGGGGTTGTGGAATGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCTCTTAATGTCTGCTTCTATTCTTTAGGGGTTGTGGAATGTTTT  100

seq1  ATATGGTTTATCTGATCTTGATTTAACTTTGGTACCTGGTATCTGTCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTTATCTGATCTTGATTTAACTTTGGTACCTGGTATCTGTCTAG  150

seq1  TAAATTGTCTATTTCATCCAGATTTTCCAGTTTTGTTGAGTATGGGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTCTATTTCATCCAGATTTTCCAGTTTTGTTGAGTATGGGCTTT  200

seq1  TGTAGTAGAATCAGATAATTATTTAAATTTTCTTCATTTCCATTGTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAGAATCAGATAATTATTTAAATTTTCTTCATTTCCATTGTTATG  250

seq1  TCTCCCTTTTCATTTCTGCTATTATTAATTTAGATACTGTTTCGGTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTTTCATTTCTGCTATTATTAATTTAGATACTGTTTCGGTGCTC  300

seq1  TCTGGTTAGTCTGGCTTTGGGTTTATCTATCTTGTTGATTTTTCTCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTAGTCTGGCTTTGGGTTTATCTATCTTGTTGATTTTTCTCAAAG  350

seq1  AACCACTCCTGGTTTTGTTGATTCTTTGTAAAGATCTTTTTGTTTCTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTCCTGGTTTTGTTGATTCTTTGTAAAGATCTTTTTGTTTCTACT  400

seq1  TGGTTGATTTCAGCCCTGAGTTTGATTATTTCCTGCTGTCTATTCCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGATTTCAGCCCTGAGTTTGATTATTTCCTGCTGTCTATTCCTCTT  450

seq1  GGGTGTATAATGCATTCATTAGACATAAAAAATTGGAAGGTCAATAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTATAATGCATTCATTAGACATAAAAAATTGGAAGGTCAATAATTC  500

seq1  CAATAAAACAATGTTGGAATGTCATTTATTCCCCAGTTATTATGGCAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAACAATGTTGGAATGTCATTTATTCCCCAGTTATTATGGCAATA  550

seq1  GATCTAGCGTCACAAATCTGGCAGGTGAGCAGTTATTAAGCACCATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGCGTCACAAATCTGGCAGGTGAGCAGTTATTAAGCACCATATAT  600

seq1  CTCACACTCTGTATCTGTACTAGAAGGTGGAAAAAGCCTCAGTATCTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTCTGTATCTGTACTAGAAGGTGGAAAAAGCCTCAGTATCTAGT  650

seq1  CATTTTATGCATAGGAATGCACCACTGAGATTCACTACTACTCTCTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATGCATAGGAATGCACCACTGAGATTCACTACTACTCTCTATAA  700

seq1  CATATTTATGACTCTATATAAA-TTATAAAATGGAAACATGCATTGAAGA  749
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATATTTATGACTCTATATAAATTTATAAAATGGAAACATGCATTGAAGA  750

seq1  GGGAA-TTAAATTTGATAATA-TTTTCCTCCCTTTAGTATTTTTGTCTGG  797
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGGAATTTAAATTTGATAATATTTTTCCTCCCTTTAGTATTTTTGTCTGG  800

seq1  GAAAAAGTCAATGTTTTCTCTTAACAAATTGCTTCTTAAACCATTGGGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTCAATGTTTTCTCTTAACAAATTGCTTCTTAAACCATTGGGGA  850

seq1  ATATAGAAAATTGGAGTAACAAGTGTTTGAACCTAGGTGCCAGAGACAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAAAATTGGAGTAACAAGTGTTTGAACCTAGGTGCCAGAGACAGT  900

seq1  TTTGGCTTAATGTAGTCAGAAATACAACTTTGATTAA-TTATTTATTCCC  946
      || |||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  TTGGGCTTAATGTAGTCAGAAATACAACTTTGATTAATTTATTTATT-CC  949

seq1  AGTGATTTGTG-TGTAGAGAA-TTCTTATCTAT--GTACCTCCCTAGCAT  992
      ||||||||||| ||||||||| |||||||||||   ||||||||||||||
seq2  AGTGATTTGTGTTGTAGAGAATTTCTTATCTATTGTTACCTCCCTAGCAT  999

seq1  ACAATTATACTGAGATTTTGGTT-AGAAAATGG--ACTTTTCTTTGGGAA  1039
      ||| | ||||||||||||||||| |||||||||   |||||  || || |
seq2  ACATTAATACTGAGATTTTGGTTAAGAAAATGGGATCTTTTTCTTAGGCA  1049

seq1  AAACATTCTAACTA-TCTATTTTCATTCTTAAC  1071
      || | | ||||||| || |||||||||||||||
seq2  AACCTTCCTAACTATTCAATTTTCATTCTTAAC  1082