BAC Information

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BAC

Clone NameB6Ng01-304P08
Chromosome13 (Build37)
Map Location 25,627,477 - 25,770,587
singlet/doubletdoublet
Overlap geneLOC214973
Upstream gene5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8
Downstream geneLOC666221, LOC100042180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304P08.bB6Ng01-304P08.g
ACCGA098372GA098373
length9271,148
definitionB6Ng01-304P08.b B6Ng01-304P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,627,477 - 25,628,399)(25,769,435 - 25,770,587)
sequence
gaattctgcttactctgtcttagctagagtttctatttctatgaagaaac
actatggccaaagtaattcttataaaggaaaacatttaattggggctggc
taacagttcagacgttaagttcattgtcatcatggggggaagcatggtgg
catgcaggccaacttggtgctggagaagtagctgagactgctaaattcag
atcagcaaacagcaggaaaagagattggagcactgggcctagtttgagct
tctaaaacattaaagcctatcccacagtgacacacttccttcaacaaggc
cacaccttcaataatgccactcttaatgagtctaactatggagacaattt
taaatcaaaccaccacactaattttgttaaatatttttgtgtttacattc
ttgaagaacactggtctataatttttacatcatccttttcttattttgca
atagaaaatattatattcaacagaaaaagaaaaaagaaagaagaaagaaa
gaaggaaagtaataaggaaagaagaaagaacaaagaaaaaagaaggaagg
aaaggaaggaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaag
aaggaaggaaagaattgaaaagttggatattctagtccccctttgtgatt
gcaggaccgaggaggcctaggcagaaagattatgtgcccaagactagtct
cagtttcattatgaaaacttttcttaaaagacaaaataattctggtaggc
ctgcctttatacattacttgagctttttcccttactgcttttaatattct
atctttatttagtgcatttgttgttctgattattatgtgtttggaggaat
ttctttttctggttcagtctatttggagttctgtaggctttcttgtatgg
gcatgtcttttcttttaggtttgggaa
gaattctggtgaatattcatgttaatgagtaagaagagatccattctctg
tcatagctgtttaagcaataaaattttgcactgaataatcagcagaatga
atcaatgtgcccttcggtatgcagggtgggaatgtttttccccacaggtc
atgggaaaagtcaaagattaaataggaaatgtagttgagctctccttagc
aacaatctaattttatatccttccaaactcactaccacagtcacgctctc
ctgagaaggatggggttatttctatcctgagttcctgtttctagaataca
gttttgcaagagttctatattcagtgcacaaaagtagggcaccttctgca
aaaataaagagtagctcttgttcctaagagcttatcacccaaaggcacta
gtaatgtgaaatgttgagtagctacacagcagcaaatggcagaaaactag
tcagtatttttagaaaatataatttccccagagagaaaaagattagtaaa
ttcaaactagaaacccaagtttaaaggggggggggagtactttcaggatg
agggccattatttgagatgtagacgcttaaggagacaggattggttgccc
ctttcatgtgacactattttgagggagatgcaaatgagtatttactcagt
ccagataaagtattgatgacagagcaaggtaatgatagcataaaagtcca
acttggtgaaccaatgatttcattagggtcagtcccaagagtgtgtgtga
gagattacctacaggaccaaggatgactcaaagtcagctatgcacccagc
atggggtgacagctcatgaaaacatgaaacctgggactctttgcatgatt
tgtaggtagctcagcaggatacaaattcttctttccttggcacctttatt
gctaatatagccttgcacatataacaagtttctgggacttcctgagactt
ctgtattgtttacttgcagcatcataacctaccttctctttagaaaatta
aacttctgtgtctttatgggggctcaatttagactaaatgagctttcctc
caggattgaatatttcactacagccactgctacacaacaatgcatggtct
agttaggggctcattgctacatgtccaggccttaattaactctctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_25627477_25628399
seq2: B6Ng01-304P08.b_50_976

seq1  GAATTCTGCTTACTCTGTCTTAGCTAGAGTTTCTATTTCTATGAAGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTACTCTGTCTTAGCTAGAGTTTCTATTTCTATGAAGAAAC  50

seq1  ACTATGGCCAAAGTAATTCTTATAAAGGAAAACATTTAATTGGGGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGCCAAAGTAATTCTTATAAAGGAAAACATTTAATTGGGGCTGGC  100

seq1  TAACAGTTCAGACGTTAAGTTCATTGTCATCATGGGGGGAAGCATGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTTCAGACGTTAAGTTCATTGTCATCATGGGGGGAAGCATGGTGG  150

seq1  CATGCAGGCCAACTTGGTGCTGGAGAAGTAGCTGAGACTGCTAAATTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGCCAACTTGGTGCTGGAGAAGTAGCTGAGACTGCTAAATTCAG  200

seq1  ATCAGCAAACAGCAGGAAAAGAGATTGGAGCACTGGGCCTAGTTTGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAAACAGCAGGAAAAGAGATTGGAGCACTGGGCCTAGTTTGAGCT  250

seq1  TCTAAAACATTAAAGCCTATCCCACAGTGACACACTTCCTTCAACAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACATTAAAGCCTATCCCACAGTGACACACTTCCTTCAACAAGGC  300

seq1  CACACCTTCAATAATGCCACTCTTAATGAGTCTAACTATGGAGACAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTCAATAATGCCACTCTTAATGAGTCTAACTATGGAGACAATTT  350

seq1  TAAATCAAACCACCACACTAATTTTGTTAAATATTTTTGTGTTTACATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAAACCACCACACTAATTTTGTTAAATATTTTTGTGTTTACATTC  400

seq1  TTGAAGAACACTGGTCTATAATTTTTACATCATCCTTTTCTTATTTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAACACTGGTCTATAATTTTTACATCATCCTTTTCTTATTTTGCA  450

seq1  ATAGAAAATATTATATTCAACAGAAAAAGAAAAAAGAAAGAAGAAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAATATTATATTCAACAGAAAAAGAAAAAAGAAAGAAGAAAGAAA  500

seq1  GAAGGAAAGTAATAAGGAAAGAAGAAAGAACAAAGAAAAAAGAAGGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAGTAATAAGGAAAGAAGAAAGAACAAAGAAAAAAGAAGGAAGG  550

seq1  AAAGGAAGGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAG  600

seq1  AAGGAAGGAAAGAATTGAAAAGTTGGATATTCTAGTCCCCCTTTGTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAAGAATTGAAAAGTTGGATATTCTAGTCCCCCTTTGTGATT  650

seq1  GCAGGACCGAGGAGGCCTAGGCAGAAAGATTATGTGCCCAAGACTAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACCGAGGAGGCCTAGGCAGAAAGATTATGTGCCCAAGACTAGTCT  700

seq1  CAGTTTCATTATGAAAACTTTTCTTAAAAGACAAAATAATTCTGGTAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCATTATGAAAACTTTTCTTAAAAGACAAAATAATTCTGGTAGGC  750

seq1  CTGCCTTTATACATTACTTGAGCTTTTTCCCTTACTGCTTTTAATATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTATACATTACTTGAGCTTTTTCCCTTACTGCTTTTAATATTCT  800

seq1  ATCTTTATTTAGTGCATTTGTTGTTCTGATTATTATGTGTTTGGAGGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATTTAGTGCATTTGTTGTTCTGATTATTATGTGTTTGGAGGAAT  850

seq1  TTC-TTTTCTGGTTCAGTCTATTTGGAGTTCTGTAGGC-TTCTTGTATGG  898
      ||| |||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCTTTTTCTGGTTCAGTCTATTTGGAGTTCTGTAGGCTTTCTTGTATGG  900

seq1  GCATGTCTTT--CTTTAGGTTTGGGAA  923
      ||||||||||   ||||||||||||||
seq2  GCATGTCTTTTCTTTTAGGTTTGGGAA  927

seq1: chr13_25769435_25770587
seq2: B6Ng01-304P08.g_66_1213 (reverse)

seq1  AATAGA-TGTTAATATTAGGCCTGGACATGGTAGCAATGAGGCCCTAACT  49
      ||||||  |||||| | |||||||||||| ||||||||||| ||||||||
seq2  AATAGAGAGTTAAT-TAAGGCCTGGACAT-GTAGCAATGAGCCCCTAACT  48

seq1  AGA-CATGCCATTGTTGTGTAGCAGTGGCCTTGTAAGTGAAATATTCCAT  98
      ||| |||| ||||||||||||||||||||  ||| |||||||||||| ||
seq2  AGACCATG-CATTGTTGTGTAGCAGTGGC--TGT-AGTGAAATATTCAAT  94

seq1  CCTGGAGGAAAGCTCATTTAGGTCTAAAATGAGCCCCCAT-AAGACACAG  147
      |||||||||||||||||||| ||||||| ||||||||||| |||||||| 
seq2  CCTGGAGGAAAGCTCATTTA-GTCTAAATTGAGCCCCCATAAAGACACA-  142

seq1  GAAGTTTAAATTTCTAAAGAG-AGGTAGGTTATGATGCTGCAAGTAAACA  196
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  GAAGTTTAATTTTCTAAAGAGAAGGTAGGTTATGATGCTGCAAGTAAACA  192

seq1  ATACAGAAGTCTCAGGAAGTCCCAGAAACTTGTTATATGTGCAAGGCTAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAGTCTCAGGAAGTCCCAGAAACTTGTTATATGTGCAAGGCTAT  242

seq1  ATTAGCAATAAAGGGTGCCAAGGAAAGAAGAATTTGTATCCTGCTGAGCT  296
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAATAAA-GGTGCCAAGGAAAGAAGAATTTGTATCCTGCTGAGCT  291

seq1  ACCTACAAATCATGCAAAGAGTCCCAGGTTTCATGTTTTCATGAGCTGTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAAATCATGCAAAGAGTCCCAGGTTTCATGTTTTCATGAGCTGTC  341

seq1  ACCCCATGCTGGGTGCATAGCTGACTTTGAGTCATCCTTGGTCCTGTAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATGCTGGGTGCATAGCTGACTTTGAGTCATCCTTGGTCCTGTAGG  391

seq1  TAATCTCTCACACACACTCTTGGGACTGACCCTAATGAAATCATTGGTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCTCACACACACTCTTGGGACTGACCCTAATGAAATCATTGGTTC  441

seq1  ACCAAGTTGGACTTTTATGCTATCATTACCTTGCTCTGTCATCAATACTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTTGGACTTTTATGCTATCATTACCTTGCTCTGTCATCAATACTT  491

seq1  TATCTGGACTGAGTAAATACTCATTTGCATCTCCCTCAAAATAGTGTCAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGACTGAGTAAATACTCATTTGCATCTCCCTCAAAATAGTGTCAC  541

seq1  ATGAAAGGGGCAACCAATCCTGTCTCCTTAAGCGTCTACATCTCAAATAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGGGCAACCAATCCTGTCTCCTTAAGCGTCTACATCTCAAATAA  591

seq1  TGGCCCTCATCCTGAAAGTACTCCCCCCCCCCTTTAAACTTGGGTTTCTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTCATCCTGAAAGTACTCCCCCCCCCCTTTAAACTTGGGTTTCTA  641

seq1  GTTTGAATTTACTAATCTTTTTCTCTCTGGGGAAATTATATTTTCTAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAATTTACTAATCTTTTTCTCTCTGGGGAAATTATATTTTCTAAAA  691

seq1  ATACTGACTAGTTTTCTGCCATTTGCTGCTGTGTAGCTACTCAACATTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGACTAGTTTTCTGCCATTTGCTGCTGTGTAGCTACTCAACATTTC  741

seq1  ACATTACTAGTGCCTTTGGGTGATAAGCTCTTAGGAACAAGAGCTACTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACTAGTGCCTTTGGGTGATAAGCTCTTAGGAACAAGAGCTACTCT  791

seq1  TTATTTTTGCAGAAGGTGCCCTACTTTTGTGCACTGAATATAGAACTCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTGCAGAAGGTGCCCTACTTTTGTGCACTGAATATAGAACTCTT  841

seq1  GCAAAACTGTATTCTAGAAACAGGAACTCAGGATAGAAATAACCCCATCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACTGTATTCTAGAAACAGGAACTCAGGATAGAAATAACCCCATCC  891

seq1  TTCTCAGGAGAGCGTGACTGTGGTAGTGAGTTTGGAAGGATATAAAATTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGAGAGCGTGACTGTGGTAGTGAGTTTGGAAGGATATAAAATTA  941

seq1  GATTGTTGCTAAGGAGAGCTCAACTACATTTCCTATTTAATCTTTGACTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTGCTAAGGAGAGCTCAACTACATTTCCTATTTAATCTTTGACTT  991

seq1  TTCCCATGACCTGTGGGGAAAAACATTCCCACCCTGCATACCGAAGGGCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATGACCTGTGGGGAAAAACATTCCCACCCTGCATACCGAAGGGCA  1041

seq1  CATTGATTCATTCTGCTGATTATTCAGTGCAAAATTTTATTGCTTAAACA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTCATTCTGCTGATTATTCAGTGCAAAATTTTATTGCTTAAACA  1091

seq1  GCTATGACAGAGAATGGATCTCTTCTTACTCATTAACATGAATATTCACC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGACAGAGAATGGATCTCTTCTTACTCATTAACATGAATATTCACC  1141

seq1  AGAATTC  1153
      |||||||
seq2  AGAATTC  1148