BAC Information

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BAC

Clone NameB6Ng01-305A05
Chromosome13 (Build37)
Map Location 51,138,853 - 51,139,975
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717
Downstream geneSpin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305A05.bB6Ng01-305A05.g
ACCGA098413GA098414
length1,1101,062
definitionB6Ng01-305A05.b B6Ng01-305A05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaggccattcccccttatatggccctttttgaagctcaccatc
catgagctctgacagtccatgtgtcctcaacatacagggtctggtggcca
actacaatggtttacccatgtaaatgtgctgcatggcaagacttggtatg
tacctggggctgttctgtgcaaatcaggacacccaagaaaacagactcac
cctgcccccacccagccccctttcattgagacagagtctcatgtagccca
gtctggcctcaagttttctttctttgtttttttttttttttcgagacagg
gtttctctgtatagccctggctgtcctggaactcactctgtagaccaggc
tggcctcgaattcagagatctacctgcctctgcctcccaagtgctgggat
taaaggcatgcgccaccacagcctggccatgcctcaagttttttatgaag
ccaggaatgaccttgagcttcggattctcctgcctccacctccaaggtgc
tgttactgcaggggagtagagccatggtggagcacataatgtaggacccc
aagaaggagccccccactcaagtctcaggacgcagggttacccaaagaaa
cacgagagacctccttgatgcaaaagcacgaggtagcttcttccttctct
ggcaggaagagcactttctctctctttcactctgccaggcaacagccagg
tcctcctgactgttccataccctgggcactccctccagggtctccctcgg
aatgtcttccaggggtgcagcctgtgggccttagggcgtccccctctgta
gccatgggtcctcacggtcctcaacggcagctgccagaataccagactcc
gaaaaacaaggcacagactcagcagccgcacaacacaccacacacataca
aaacgtaccttgagtccttggggaccctcaaatcccggacgagcccccaa
gtgtaggacccccagaggagccccccactcaagtctcgggacgcaagtta
ccaagaacacgagagacctccttgatgcaaaagcacgagtagctttattg
cagagctccggtcgatacttatctcattgcagaaacgaagattcaccctg
agaactcaaa
gaattcagtaggaattcagtgagaatgttacctattcagtaacattcaaa
tctatttctagtagagatggtcaaattagttaggcattacaaagatcaga
gttacaatagctcagggctagtctgcagagtgattacttaggacagtagc
cgagtctcacccaaacaagggaacacacaatggcctagcaaataggtaga
ggttaaccatgaaagagttggaacagcataatcaggcatttactaagaac
ccctgatggtgggcttaacaatagactagcattacacctgcctcccttct
tagtggtaaacagctgctggtccctgccatcttttgttgtatacattcct
tttgttttgtgtcactgtaactctgtggatgtgtcctgcctggctttctt
gtttttcttctgtatataaaagtctggtgttcgtttggacaatacactca
gattcaacacactctctcatgtcatgtctgtttgtcattcgactccttca
cccacctgcaaccagagacccattcctcgaagatcgaagatcggagaccc
ataaaatggattagtgtgtggcagttggtgcctgaacaggtactaggaca
gaaaattccctaaagaactattttatgaacagttccacttccccattatc
caaatgccaaggcctcattttcccttccttctctggtgtagccagagagg
aggttgactatttaagtaagttggaaattaatgactacaaagatccaatt
actgggcctcagaaaggagggacaaattatgaacagattcattgtcctga
cttgattcataaccagatttggaagggagggacatgaagggacaccagat
tctcttgtgagctgaagtgaatgggcaactctctactcgcaggatccctt
ggtatatagaagaggcacacagtgtgagtgccaggccctcctgaacattc
ctaccgagactttgagacatggtcatgaggctcattgttcaaaagtgaat
tcttcttagagacttgtactgtggagaccttgaccgaagctatcatgagt
taggggctcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_51138853_51139975
seq2: B6Ng01-305A05.b_46_1155 (reverse)

seq1  TTTGAG-TCTCAGGGTTGATTCCTCTGTTTCCTGC-ATGAGATAAGTATC  48
      |||||| |||||||| ||| || || |||| |||| ||||||||||||||
seq2  TTTGAGTTCTCAGGG-TGAATCTTC-GTTT-CTGCAATGAGATAAGTATC  47

seq1  GACCCGGAGCTCTGCCATTAAAGCTACCTCGTGCTTTTGCATCAAGGAGG  98
      || ||||||||||| || |||||||| |||||||||||||||||||||||
seq2  GA-CCGGAGCTCTG-CAATAAAGCTA-CTCGTGCTTTTGCATCAAGGAGG  94

seq1  TCTCTCGTGTTTCTTTGGGTAACCCTGCGTCCCGAGACTTGAGTGGGGGG  148
      ||||||||| |||||  ||||| | |||||||||||||||||||||||||
seq2  TCTCTCGTG-TTCTT--GGTAA-CTTGCGTCCCGAGACTTGAGTGGGGGG  140

seq1  CTCCTTCTTGGGGGGTCCTACACTTGGGGGCTCGTCCGGGATTTGAGGGG  198
      |||| |||  |||||||||||||||||||||||||||||||||||| |||
seq2  CTCC-TCT--GGGGGTCCTACACTTGGGGGCTCGTCCGGGATTTGA-GGG  186

seq1  TCCCCAAGGACTCAAGGTACGTTTTGTATGTGTGTGGTGTGTTTGTGCGG  248
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCCCAAGGACTCAAGGTACGTTTTGTATGTGTGTGGTGTG-TTGTGCGG  235

seq1  CTGCTGAGTCTGTGCCTTGTTTTTCGGAGTCTGGTATTCTGGCAGCTGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGTCTGTGCCTTGTTTTTCGGAGTCTGGTATTCTGGCAGCTGCC  285

seq1  GTTGAGGACCGTGAGGACCCATGGCTACAGAGGGGGACGCCCTAAGGCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGACCGTGAGGACCCATGGCTACAGAGGGGGACGCCCTAAGGCCC  335

seq1  ACAGGCTGCACCCCTGGAAGACATTCCGAGGGAGACCCTGGAGGGAGTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTGCACCCCTGGAAGACATTCCGAGGGAGACCCTGGAGGGAGTGC  385

seq1  CCAGGGTATGGAACAGTCAGGAGGACCTGGCTGTTGCCTGGCAGAGTGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTATGGAACAGTCAGGAGGACCTGGCTGTTGCCTGGCAGAGTGAA  435

seq1  AGAGAGAGAAAGTGCTCTTCCTGCCAGAGAAGGAAGAAGCTACCTCGTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAAAGTGCTCTTCCTGCCAGAGAAGGAAGAAGCTACCTCGTGC  485

seq1  TTTTGCATCAAGGAGGTCTCTCGTGTTTCTTTGGGTAACCCTGCGTCCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATCAAGGAGGTCTCTCGTGTTTCTTTGGGTAACCCTGCGTCCTG  535

seq1  AGACTTGAGTGGGGGGCTCCTTCTTGGGGTCCTACATTATGTGCTCCACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGAGTGGGGGGCTCCTTCTTGGGGTCCTACATTATGTGCTCCACC  585

seq1  ATGGCTCTACTCCCCTGCAGTAACAGCACCTTGGAGGTGGAGGCAGGAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTACTCCCCTGCAGTAACAGCACCTTGGAGGTGGAGGCAGGAGA  635

seq1  ATCCGAAGCTCAAGGTCATTCCTGGCTTCATAAAAAACTTGAGGCATGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGAAGCTCAAGGTCATTCCTGGCTTCATAAAAAACTTGAGGCATGGC  685

seq1  CAGGCTGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGC  735

seq1  AGGTAGATCTCTGAATTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATCTCTGAATTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAG  785

seq1  GACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAAC  835

seq1  AAAGAAAGAAAACTTGAGGCCAGACTGGGCTACATGAGACTCTGTCTCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAACTTGAGGCCAGACTGGGCTACATGAGACTCTGTCTCAA  885

seq1  TGAAAGGGGGCTGGGTGGGGGCAGGGTGAGTCTGTTTTCTTGGGTGTCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGGGCTGGGTGGGGGCAGGGTGAGTCTGTTTTCTTGGGTGTCCT  935

seq1  GATTTGCACAGAACAGCCCCAGGTACATACCAAGTCTTGCCATGCAGCAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCACAGAACAGCCCCAGGTACATACCAAGTCTTGCCATGCAGCAC  985

seq1  ATTTACATGGGTAAACCATTGTAGTTGGCCACCAGACCCTGTATGTTGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATGGGTAAACCATTGTAGTTGGCCACCAGACCCTGTATGTTGAG  1035

seq1  GACACATGGACTGTCAGAGCTCATGGATGGTGAGCTTCAAAAAGGGCCAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATGGACTGTCAGAGCTCATGGATGGTGAGCTTCAAAAAGGGCCAT  1085

seq1  ATAAGGGGGAATGGCCTCTGAATTC  1123
      |||||||||||||||||||||||||
seq2  ATAAGGGGGAATGGCCTCTGAATTC  1110