BAC Information

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BAC

Clone NameB6Ng01-305L23
Chromosome13 (Build37)
Map Location 37,175,899 - 37,369,113
singlet/doubletdoublet
Overlap genenone
Upstream geneLyrm4, Fars2, LOC100041590, LOC666758, Nrn1, F13a1
Downstream geneLy86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305L23.bB6Ng01-305L23.g
ACCGA098957GA098958
length7561,050
definitionB6Ng01-305L23.b B6Ng01-305L23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,368,556 - 37,369,113)(37,175,899 - 37,176,943)
sequence
gaattctctgggctacctttctgtaggcaaaagcggtttgtacaatcact
aatggatcctgctgttcatggattaatgctttgggccaaggggaaagaaa
aatacggaaacgtgattataaagccacctggtttataagacccttctggt
ttatgggatttgttcagctgggtggttctgaggcactgggggtctgggtg
agatcaatactgcaggtttgcctcatccccctgcttggaatcctacagag
aatagctataattaaatgttgtgtgaaacaaatcaaacaggatttgagtc
cttgggggtcagattagtcataatgattggcaaagcagataggaaatttg
ccaaagaccagagaagtgttagaaataaagggtatgtattttgggaaata
attctccataattctcctgtatttttatatgcctgaaaaggaaggcagtt
gcaaggaaggccttttagtctacattatcttttcaaggatgattacgtaa
gaagcagcaagtcctttgccgatcttgacaactgactatcacttgaaagt
ggtatgcaataagttaaaaaacatgcagacatttttcaataaaataattc
aaaaaccaaggaaaaaatcaaatgaaacaatagaaaacaaaagtacagat
gtaaccaatagaaaagaaatagcaatatgacatagttaagcttaactcga
tcagcaataacactaagtgtaaatgacccgaggacttcaatgaaaaggca
ataata
gaattctctgtaaagaacatgttagctgcatcccagcaattctggcctgt
agggttcttttcctcttgttttaactctactgaaagacagtctagacctc
atacatacccatttagtgctctgaaagccaagcaatgtaagaaatcagcc
taggtttatacaaacgaaagcacatatgcactattcaatatatgccaata
aaattcgtcaagagacattctgcaaacacaaagggttttagataaagata
taagtccaatgggatatagtaaatattacagatggcacatctgcaaatca
tacaatactttacgacagtattaagaaagtgctcagaggaaggaagggaa
cagagggaacatggctgataaaagagctcagaaactacttcattctctgc
ttcaaactgtaatctacctgcaaagatcaaagggggaggggaaagactag
agttggttcgggtaaataaagaagcaagttcttccagaaagacattccaa
gccaaaaaatattgtccagccattctgacactaaatactctaaatattgt
accacaaggatgcatgtagacactcactcgggacgcttaatatcagagta
actagttatgaggtgaggttcacatctgattggcatagccagtgtattga
agaaaatctttgcacacagagttctctaagttaattgtaaaggctaggcc
agtcagggccatagtcacaggtggtaagcagaggtaatactaaaagtgct
ttaaacaaaacactatattgatcttgttctactattttttccagcatctg
atatgacagtttctctctctctctctctctctctctctctctctctctct
ctttctttcttctttctttttttttagaattttttttgtacactatactc
ttctgctcatgggtttctccttccccagctcccccatacctcctcacata
ccccaattctatgcatgccccccccttctccaaacatgcaaacaaaacaa
acccaaattccagaccaaaacttattttttttaaggctaggaaaaaaaca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_37368556_37369113
seq2: B6Ng01-305L23.b_46_603 (reverse)

seq1  TGCATACCACTTTCAAGTGATAGTCAGTTGTCAAGATCGGCAAAGGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACCACTTTCAAGTGATAGTCAGTTGTCAAGATCGGCAAAGGACTT  50

seq1  GCTGCTTCTTACGTAATCATCCTTGAAAAGATAATGTAGACTAAAAGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTCTTACGTAATCATCCTTGAAAAGATAATGTAGACTAAAAGGCC  100

seq1  TTCCTTGCAACTGCCTTCCTTTTCAGGCATATAAAAATACAGGAGAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCAACTGCCTTCCTTTTCAGGCATATAAAAATACAGGAGAATTA  150

seq1  TGGAGAATTATTTCCCAAAATACATACCCTTTATTTCTAACACTTCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATTATTTCCCAAAATACATACCCTTTATTTCTAACACTTCTCTG  200

seq1  GTCTTTGGCAAATTTCCTATCTGCTTTGCCAATCATTATGACTAATCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGGCAAATTTCCTATCTGCTTTGCCAATCATTATGACTAATCTGA  250

seq1  CCCCCAAGGACTCAAATCCTGTTTGATTTGTTTCACACAACATTTAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAGGACTCAAATCCTGTTTGATTTGTTTCACACAACATTTAATTA  300

seq1  TAGCTATTCTCTGTAGGATTCCAAGCAGGGGGATGAGGCAAACCTGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATTCTCTGTAGGATTCCAAGCAGGGGGATGAGGCAAACCTGCAGT  350

seq1  ATTGATCTCACCCAGACCCCCAGTGCCTCAGAACCACCCAGCTGAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCTCACCCAGACCCCCAGTGCCTCAGAACCACCCAGCTGAACAAA  400

seq1  TCCCATAAACCAGAAGGGTCTTATAAACCAGGTGGCTTTATAATCACGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAAACCAGAAGGGTCTTATAAACCAGGTGGCTTTATAATCACGTT  450

seq1  TCCGTATTTTTCTTTCCCCTTGGCCCAAAGCATTAATCCATGAACAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTATTTTTCTTTCCCCTTGGCCCAAAGCATTAATCCATGAACAGCAG  500

seq1  GATCCATTAGTGATTGTACAAACCGCTTTTGCCTACAGAAAGGTAGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATTAGTGATTGTACAAACCGCTTTTGCCTACAGAAAGGTAGCCCA  550

seq1  GAGAATTC  558
      ||||||||
seq2  GAGAATTC  558

seq1: chr13_37175899_37176943
seq2: B6Ng01-305L23.g_68_1117

seq1  GAATTCTCTGTAAAGAACATGTTAGCTGCATCCCAGCAATTCTGGCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTAAAGAACATGTTAGCTGCATCCCAGCAATTCTGGCCTGT  50

seq1  AGGGTTCTTTTCCTCTTGTTTTAACTCTACTGAAAGACAGTCTAGACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCTTTTCCTCTTGTTTTAACTCTACTGAAAGACAGTCTAGACCTC  100

seq1  ATACATACCCATTTAGTGCTCTGAAAGCCAAGCAATGTAAGAAATCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACCCATTTAGTGCTCTGAAAGCCAAGCAATGTAAGAAATCAGCC  150

seq1  TAGGTTTATACAAACGAAAGCACATATGCACTATTCAATATATGCCAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTATACAAACGAAAGCACATATGCACTATTCAATATATGCCAATA  200

seq1  AAATTCGTCAAGAGACATTCTGCAAACACAAAGGGTTTTAGATAAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCGTCAAGAGACATTCTGCAAACACAAAGGGTTTTAGATAAAGATA  250

seq1  TAAGTCCAATGGGATATAGTAAATATTACAGATGGCACATCTGCAAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCAATGGGATATAGTAAATATTACAGATGGCACATCTGCAAATCA  300

seq1  TACAATACTTTACGACAGTATTAAGAAAGTGCTCAGAGGAAGGAAGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATACTTTACGACAGTATTAAGAAAGTGCTCAGAGGAAGGAAGGGAA  350

seq1  CAGAGGGAACATGGCTGATAAAAGAGCTCAGAAACTACTTCATTCTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGAACATGGCTGATAAAAGAGCTCAGAAACTACTTCATTCTCTGC  400

seq1  TTCAAACTGTAATCTACCTGCAAAGATCAAAGGGGGAGGGGAAAGACTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTGTAATCTACCTGCAAAGATCAAAGGGGGAGGGGAAAGACTAG  450

seq1  AGTTGGTTCGGGTAAATAAAGAAGCAAGTTCTTCCAGAAAGACATTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTTCGGGTAAATAAAGAAGCAAGTTCTTCCAGAAAGACATTCCAA  500

seq1  GCCAAAAAATATTGTCCAGCCATTCTGACACTAAATACTCTAAATATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAAATATTGTCCAGCCATTCTGACACTAAATACTCTAAATATTGT  550

seq1  ACCACAAGGATGCATGTAGACACTCACTCGGGACGCTTAATATCAGAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAGGATGCATGTAGACACTCACTCGGGACGCTTAATATCAGAGTA  600

seq1  ACTAGTTATGAGGTGAGGTTCACATCTGATTGGCATAGCCAGTGTATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTATGAGGTGAGGTTCACATCTGATTGGCATAGCCAGTGTATTGA  650

seq1  AGAAAATCTTTGCACACAGAGTTCTCTAAGTTAATTGTAAAGGCTAGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCTTTGCACACAGAGTTCTCTAAGTTAATTGTAAAGGCTAGGCC  700

seq1  AGTCAGGGCCATAGTCACAGGTGGTAAGCAGAGGTAATACTAAAAGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGGCCATAGTCACAGGTGGTAAGCAGAGGTAATACTAAAAGTGCT  750

seq1  TTAAACAAAACACTATATTGATCTTGTTCTACTATTTTTTCCAGCATCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAAACACTATATTGATCTTGTTCTACTATTTTTTCCAGCATCTG  800

seq1  ATATGACAGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACAGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  850

seq1  CTTTCTTTCTTTCTTTCTTTTTTTTTAGAATTTTTTTTGTACACTATACT  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTC-TTCTTTCTTTTTTTTTAGAATTTTTTTTGTACACTATACT  899

seq1  CTTCTGCTCAT-GGTTTCTCCTTCCCCAGCTCCCCCATACCTCCTCACAT  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTCATGGGTTTCTCCTTCCCCAGCTCCCCCATACCTCCTCACAT  949

seq1  A-CCCAATTCTATGCATGCCCCCCC--TCTCCAAACATGCAAACAAAACA  996
      | |||||||||||||||||||||||  |||||||||||||||||||||||
seq2  ACCCCAATTCTATGCATGCCCCCCCCTTCTCCAAACATGCAAACAAAACA  999

seq1  AACACAAAATCCAGA-CAAAACTTA-TTTTTTAAAGGCAAAGAAAAAAAC  1044
      ||| |||| |||||| ||||||||| |||||| ||||| | |||||||||
seq2  AACCCAAATTCCAGACCAAAACTTATTTTTTTTAAGGCTAGGAAAAAAAC  1049

seq1  A  1045
      |
seq2  A  1050