BAC Information

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BAC

Clone NameB6Ng01-305M01
Chromosome13 (Build37)
Map Location 23,981,519 - 24,091,804
singlet/doubletdoublet
Overlap geneSlc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Upstream geneV1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3
Downstream geneLrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305M01.bB6Ng01-305M01.g
ACCGA098961GA098962
length1,083600
definitionB6Ng01-305M01.b B6Ng01-305M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,981,519 - 23,982,596)(24,091,205 - 24,091,804)
sequence
gaattcctttggttgttcccacacacacagtatgggccagggtaaggtgg
tcagcacacatcgtggccacattgctcatagaggagcctccaaaatcctg
cttctcgaaatatatgatgtcagagaggcagaagacaccggcagaactac
agaaattccttggtaggggccatgacctcactagagaagggaaattcaag
gcaaaagggggtcagatctcttgctgagcatagagccagtcacacccgtt
cttcctgcaagtccattcaattcttgattattgtcagctgagcaaacttt
tctgctaacttctcaaatgtgaggaaataaaatttcagaagtttgcaaag
ttgtctctgcccaggaagaaatcctgcccttgcgtaagtgtgagagaaga
gaaaaaatgaataaaatgtcccctttgcacatgaaacaatgagccaacaa
gagtttgacatccatactcaaatcctgttcctccccaaattttttaaaac
attttttttaatcttatgtgtatgggtgtgcctgcgtacgatatatatgc
ctgagggccacagagtctgaaacagaaggtaatatcttcttgaactggag
tcacagcccattgtgagacaccaagtgggtgttagaaatagcgaacctca
gtccgttggaaaagcctctagtgctcttaccctctaactcatctttccag
ccccatcaaaccctatttcttctaaatgtctcatgcagagaattgttcta
caagacctgagctttctagttggagcaaactcagtttttctagagaaaca
tcctgaactcatgctccatggggtttcaggacacatggcacaaaactggg
ggaaaaaatcacaaaccacttgaagaagtgtgaaacaaacacacacacac
acacacacacacacacacacacacacacacagaatgagagcgtcaaagat
atcagaagtgatgcaggcatttaaagaagtgaaagtagaagacaaaggat
gtcagaagcatgacaaggtgtcaaattgtctttatctaccccttgtgggt
caacaatataacaaattaaaaataggaaatatc
gaattcttctctcccttggctctgctgcctccgtctccatctccccagca
ctctgcagccaatggcaagctcctgggatggactcgcccatggttttccc
aagtgcagtgaaacaatgtatcttgttctgatcccgccagccttctccaa
agtttcaactttctcccataggtagtacttgtcagcctttctttcttttt
taatagctggtttctatcccattgtataaatatattgtgctttcttttgc
ttttgttttcgttttttttcctatccctttgcgttttcccacttcttgtc
cagatttacactttcaaaatctgtgcatgcccagatttttgtagatgcac
tgtattttgagaactaagttatatatattaagttatatgtgtgtgtatgt
atgtgtatctggacttgaacttaagatacgtctttaggataagtacaagc
atgccaccacacctggaattcctctttttttgtttgtttacttgtttgtt
tgtttgtttttcctcccagagtttctttttgtatttaaaaattctttgtt
taagagtgggaggtgaaggttggggacatcctcatggggggaggaggtat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23981519_23982596
seq2: B6Ng01-305M01.b_45_1127

seq1  GAATTCCTTTGGTTGTTCCCACACACACAGTATGGGCCAGGGTAAGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGGTTGTTCCCACACACACAGTATGGGCCAGGGTAAGGTGG  50

seq1  TCAGCACACATCGTGGCCACATTGCTCATAGAGGAGCCTCCAAAATCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACACATCGTGGCCACATTGCTCATAGAGGAGCCTCCAAAATCCTG  100

seq1  CTTCTCGAAATATATGATGTCAGAGAGGCAGAAGACACCGGCAGAACTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCGAAATATATGATGTCAGAGAGGCAGAAGACACCGGCAGAACTAC  150

seq1  AGAAATTCCTTGGTAGGGGCCATGACCTCACTAGAGAAGGGAAATTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCCTTGGTAGGGGCCATGACCTCACTAGAGAAGGGAAATTCAAG  200

seq1  GCAAAAGGGGGTCAGATCTCTTGCTGAGCATAGAGCCAGTCACACCCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGGGGTCAGATCTCTTGCTGAGCATAGAGCCAGTCACACCCGTT  250

seq1  CTTCCTGCAAGTCCATTCAATTCTTGATTATTGTCAGCTGAGCAAACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCAAGTCCATTCAATTCTTGATTATTGTCAGCTGAGCAAACTTT  300

seq1  TCTGCTAACTTCTCAAATGTGAGGAAATAAAATTTCAGAAGTTTGCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAACTTCTCAAATGTGAGGAAATAAAATTTCAGAAGTTTGCAAAG  350

seq1  TTGTCTCTGCCCAGGAAGAAATCCTGCCCTTGCGTAAGTGTGAGAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTGCCCAGGAAGAAATCCTGCCCTTGCGTAAGTGTGAGAGAAGA  400

seq1  GAAAAAATGAATAAAATGTCCCCTTTGCACATGAAACAATGAGCCAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATGAATAAAATGTCCCCTTTGCACATGAAACAATGAGCCAACAA  450

seq1  GAGTTTGACATCCATACTCAAATCCTGTTCCTCCCCAAATTTTTTAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGACATCCATACTCAAATCCTGTTCCTCCCCAAATTTTTTAAAAC  500

seq1  ATTTTTTTTAATCTTATGTGTATGGGTGTGCCTGCGTACGATATATATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTAATCTTATGTGTATGGGTGTGCCTGCGTACGATATATATGC  550

seq1  CTGAGGGCCACAGAGTCTGAAACAGAAGGTAATATCTTCTTGAACTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGCCACAGAGTCTGAAACAGAAGGTAATATCTTCTTGAACTGGAG  600

seq1  TCACAGCCCATTGTGAGACACCAAGTGGGTGTTAGAAATAGCGAACCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCCCATTGTGAGACACCAAGTGGGTGTTAGAAATAGCGAACCTCA  650

seq1  GTCCGTTGGAAAAGCCTCTAGTGCTCTTACCCTCTAACTCATCTTTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTTGGAAAAGCCTCTAGTGCTCTTACCCTCTAACTCATCTTTCCAG  700

seq1  CCCCATCAAACCCTATTTCTTCTAAATGTCTCATGCAGAGAATTGTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCAAACCCTATTTCTTCTAAATGTCTCATGCAGAGAATTGTTCTA  750

seq1  CAAGACCTGAGCTTTCTAGTTGGAGCAAACTCAGTTTTTCTAGAGAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCTGAGCTTTCTAGTTGGAGCAAACTCAGTTTTTCTAGAGAAACA  800

seq1  TCCTGAACTCATGCTCCATGGGGTTTCAGGACACATGGCACAAAACTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAACTCATGCTCCATGGGGTTTCAGGACACATGGCACAAAACTGGG  850

seq1  GGAAAAAATCACAAACCACTTGAAGAAGTGTGAAACAAACACACACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATCACAAACCACTTGAAGAAGTGTGAAACAAACACACACACAC  900

seq1  ACACACACACACACACACACACACACACACAGAATGAGAGCGTCAAAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACAGAATGAGAGCGTCAAAGAT  950

seq1  ATCAGAAGTGATGCAGGCATTTAAAGAGGTGAAAGTAG-AGACAAAGGAT  999
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  ATCAGAAGTGATGCAGGCATTTAAAGAAGTGAAAGTAGAAGACAAAGGAT  1000

seq1  GTCAGAAGCATGAC-AGGTGTCAAATTGTC-TTATCTACCCCTTGT-GGT  1046
      |||||||||||||| ||||||||||||||| ||||||||||||||| |||
seq2  GTCAGAAGCATGACAAGGTGTCAAATTGTCTTTATCTACCCCTTGTGGGT  1050

seq1  CAACAATATAACAAATTAAAAATA-GAAATATC  1078
      |||||||||||||||||||||||| ||||||||
seq2  CAACAATATAACAAATTAAAAATAGGAAATATC  1083

seq1: chr13_24091205_24091804
seq2: B6Ng01-305M01.g_65_664 (reverse)

seq1  ATACCTCCTCCCCCCATGAGGATGTCCCCAACCTTCACCTCCCACTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCCTCCCCCCATGAGGATGTCCCCAACCTTCACCTCCCACTCTTA  50

seq1  AACAAAGAATTTTTAAATACAAAAAGAAACTCTGGGAGGAAAAACAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAATTTTTAAATACAAAAAGAAACTCTGGGAGGAAAAACAAACA  100

seq1  AACAAACAAGTAAACAAACAAAAAAAGAGGAATTCCAGGTGTGGTGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAGTAAACAAACAAAAAAAGAGGAATTCCAGGTGTGGTGGCAT  150

seq1  GCTTGTACTTATCCTAAAGACGTATCTTAAGTTCAAGTCCAGATACACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTACTTATCCTAAAGACGTATCTTAAGTTCAAGTCCAGATACACAT  200

seq1  ACATACACACACATATAACTTAATATATATAACTTAGTTCTCAAAATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACACACATATAACTTAATATATATAACTTAGTTCTCAAAATACA  250

seq1  GTGCATCTACAAAAATCTGGGCATGCACAGATTTTGAAAGTGTAAATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCTACAAAAATCTGGGCATGCACAGATTTTGAAAGTGTAAATCTG  300

seq1  GACAAGAAGTGGGAAAACGCAAAGGGATAGGAAAAAAAACGAAAACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAAGTGGGAAAACGCAAAGGGATAGGAAAAAAAACGAAAACAAAA  350

seq1  GCAAAAGAAAGCACAATATATTTATACAATGGGATAGAAACCAGCTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGAAAGCACAATATATTTATACAATGGGATAGAAACCAGCTATTA  400

seq1  AAAAAGAAAGAAAGGCTGACAAGTACTACCTATGGGAGAAAGTTGAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAGAAAGGCTGACAAGTACTACCTATGGGAGAAAGTTGAAACT  450

seq1  TTGGAGAAGGCTGGCGGGATCAGAACAAGATACATTGTTTCACTGCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAAGGCTGGCGGGATCAGAACAAGATACATTGTTTCACTGCACTT  500

seq1  GGGAAAACCATGGGCGAGTCCATCCCAGGAGCTTGCCATTGGCTGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACCATGGGCGAGTCCATCCCAGGAGCTTGCCATTGGCTGCAGAG  550

seq1  TGCTGGGGAGATGGAGACGGAGGCAGCAGAGCCAAGGGAGAGAAGAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGAGATGGAGACGGAGGCAGCAGAGCCAAGGGAGAGAAGAATTC  600