BAC Information

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BAC

Clone NameB6Ng01-307K20
Chromosome13 (Build37)
Map Location 65,081,754 - 65,082,759
singlet/doubletsinglet
Overlap genenone
Upstream geneHsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301
Downstream geneLOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307K20.bB6Ng01-307K20.g
ACCGA100385GA100386
length1,0251,186
definitionB6Ng01-307K20.b B6Ng01-307K20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccacacctagctgaggaattactgggagcactaagtagacatta
tgggttttaagaaggggagagagacatgttaaattgggagagaataatga
tagtgggaataaatagctttattggtaaaatgtgtggtggtttgaatgag
aatggtccacataggctcatatgactgaaaacttggtctctagttggtga
aattgtttagggaggattaggaggtgtggtcttactagagatctgtgtca
ctagtggtaggttagcctacagtttcagaggtttagtccattatcatcat
agcagaaagcatgtcagcacgcatgtagacaaggtgctagaggaggtgag
agttctacattttgatctgaaagcagaaaggagaatggaatttcacattg
ggcagagcttaagcacaggagaccttaaagccattcctcacagtgacaag
gccataactactccaataaggccacacctctttatagtgccattccctgt
gagtcaagcattcaaacacatctatagggccaaacctattcacacctacc
acagcaagccgcctggttccttagtttactttaaggattgtgtaattgtc
tatcaaccttaatgaataaggcattttacatttaaatttcagcttttcta
tttctgctaacctgagatgtagagggaaagacttcaacaagatgaggttt
gtagttttttgaaaaataatacccagtgtggtcaaggaagttactttctc
atgtttaatggctttggctcttggctgtcaaaaacacttgcggggaaact
gttcataagtgacttgctatgggtgacaatgagcttctgtctttgctaaa
gaatcaagaaataattaagccattgagttccagcctcacagttcccttct
tgatcgccttacctgattttttaactaaaaataactgagagacattctat
agaagttgggatgcctgagtatgcttcattcactggcgccaaatgattcc
atgccaaaaatcaaagcctatcctg
gaattctaaactgaggaatagtgaatggctaagaagcaccaaaaaaaaaa
aaaatgttcaacatccttaatcatcaggaaaatgcaaatcaaaacaaccc
tgagattccatctcaaaccagtcagaatggctaagatcaaaaactcaagt
gacagcagatgctgccgaggatgtggagaaagaggaacactcctccattg
ctggtagaatttcaaactggtacaaccactgtggaaatcagtttggcagt
tcctcagaaaattgaagataattctactggaagattcagtgataccactc
ctgggcatatacccagaagatgctccaacttgtaagaagaacacatgctc
cactatgttcatagcagccttatttataatagccagaagctggaaaaaac
ccagatgtcactctacagagaaatggatacagaaaatgtggtacatttat
acaatggagtactacacaactattaaaaacaatgaattcatgaaattctt
agacaaatggatggatctggaggatatcactgtaagtgaggtaacccaat
caccaaagaacacacatgatatgcactcactgataaggggatattagtcc
agacctcagaatacctgagatacaatttgcaaaacacttgaaactcaata
agaaggaagaccaaaatctgcatactttgatccttcttagaagggggaac
aaaatacacatggaaggagttacagagacaaaattcagcgcagagactga
aggaatgaccatccagaaagtgccccacctggggatccatcccatcaata
accaccaaacacagacactattgcagatgccaacaagaacttggtggcaa
gagcctgatatagctgtctcctgagaggctctgccagagcctgaataata
cagaagtggatactcacagttgtccattagagggagcacagggtccccaa
tgaaggagctagagaaagtatccaaggatctgatgggtttgcagccctat
aggaggaccaacatatgaactaaacagtgcccccaagagcatcctgagac
tataccaccaataaaaataaaaacacgggaagactcccggctcctagctg
catttgtagctggaggaatggctagttagtcaatcattgggaggtgaggc
cttggttctggtgaagaggttcttactatatatgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65081754_65082759
seq2: B6Ng01-307K20.b_47_1071

seq1  GAATTCCCACACCTAGCTGAGGAATTACTGGGAGCACTAAGTAGACATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACACCTAGCTGAGGAATTACTGGGAGCACTAAGTAGACATTA  50

seq1  TGGGTTTTAAGAAGGGGAGAGAGACATGTTAAATTGGGAGAGAATAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTAAGAAGGGGAGAGAGACATGTTAAATTGGGAGAGAATAATGA  100

seq1  TAGTGGGAATAAATAGCTTTATTGGTAAAATGTGTGGTGGTTTGAATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGAATAAATAGCTTTATTGGTAAAATGTGTGGTGGTTTGAATGAG  150

seq1  AATGGTCCACATAGGCTCATATGACTGAAAACTTGGTCTCTAGTTGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCCACATAGGCTCATATGACTGAAAACTTGGTCTCTAGTTGGTGA  200

seq1  AATTGTTTAGGGAGGATTAGGAGGTGTGGTCTTACTAGAGATCTGTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTAGGGAGGATTAGGAGGTGTGGTCTTACTAGAGATCTGTGTCA  250

seq1  CTAGTGGTAGGTTAGCCTACAGTTTCAGAGGTTTAGTCCATTATCATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGTAGGTTAGCCTACAGTTTCAGAGGTTTAGTCCATTATCATCAT  300

seq1  AGCAGAAAGCATGTCAGCACGCATGTAGACAAGGTGCTAGAGGAGGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAAGCATGTCAGCACGCATGTAGACAAGGTGCTAGAGGAGGTGAG  350

seq1  AGTTCTACATTTTGATCTGAAAGCAGAAAGGAGAATGGAATTTCACATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTACATTTTGATCTGAAAGCAGAAAGGAGAATGGAATTTCACATTG  400

seq1  GGCAGAGCTTAAGCACAGGAGACCTTAAAGCCATTCCTCACAGTGACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCTTAAGCACAGGAGACCTTAAAGCCATTCCTCACAGTGACAAG  450

seq1  GCCATAACTACTCCAATAAGGCCACACCTCTTTATAGTGCCATTCCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAACTACTCCAATAAGGCCACACCTCTTTATAGTGCCATTCCCTGT  500

seq1  GAGTCAAGCATTCAAACACATCTATAGGGCCAAACCTATTCACACCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGCATTCAAACACATCTATAGGGCCAAACCTATTCACACCTACC  550

seq1  ACAGCAAGCCGCCTGGTTCCTTAGTTTACTTTAAGGATTGTGTAATTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGCCGCCTGGTTCCTTAGTTTACTTTAAGGATTGTGTAATTGTC  600

seq1  TATCAACCTTAATGAATAAGGCATTTTACATTTAAATTTCAGC-TTTCTA  649
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATCAACCTTAATGAATAAGGCATTTTACATTTAAATTTCAGCTTTTCTA  650

seq1  TTTCTGCTAACCTGAGATGTAGAGGGAAAGACTTCAACAAGATGAGGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTAACCTGAGATGTAGAGGGAAAGACTTCAACAAGATGAGGTTT  700

seq1  GTAG-TTTTTGAAAAATAATACCCAGTGTGGTCAAGGAAGTTACTTTCTC  748
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTTTTGAAAAATAATACCCAGTGTGGTCAAGGAAGTTACTTTCTC  750

seq1  ATGTTTAATGGCTTTGGCTCTTGGCTGTTCAAAAACACTTGCGGGGAAAC  798
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGTTTAATGGCTTTGGCTCTTGGCTG-TCAAAAACACTTGCGGGGAAAC  799

seq1  TGTTCATAAGTGACTTGCTAT-GGTGACAATGAGC-TCTGTCTTTGCTAA  846
      ||||||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  TGTTCATAAGTGACTTGCTATGGGTGACAATGAGCTTCTGTCTTTGCTAA  849

seq1  AGAATC-AGGAATAATTA--GCATTGAG-TCCAGCCTCACAGTTCCCTTC  892
      |||||| || ||||||||   ||||||| |||||||||||||||||||||
seq2  AGAATCAAGAAATAATTAAGCCATTGAGTTCCAGCCTCACAGTTCCCTTC  899

seq1  TTGATCGCCTTA-CTGA-TTTTTAACTAAAA--TACTGAGAGACATTCTA  938
      |||||||||||| |||| |||||||||||||   ||||||||||||||||
seq2  TTGATCGCCTTACCTGATTTTTTAACTAAAAATAACTGAGAGACATTCTA  949

seq1  TAG-AGTT-GGATGCCTGAGTATGC-TCATTCACTGGTGCC-AATG-TTC  983
      ||| |||| |||||||||||||||| ||||||||||| ||| |||| |||
seq2  TAGAAGTTGGGATGCCTGAGTATGCTTCATTCACTGGCGCCAAATGATTC  999

seq1  CATGC--AAAATTAAAG-CTATCCTG  1006
      |||||  ||||| |||| ||||||||
seq2  CATGCCAAAAATCAAAGCCTATCCTG  1025