BAC Information

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BAC

Clone NameB6Ng01-307P15
Chromosome13 (Build37)
Map Location 43,183,666 - 43,184,800
singlet/doubletsinglet
Overlap genePhactr1
Upstream geneHivep1, Edn1, Hn1-ps4
Downstream geneTbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307P15.bB6Ng01-307P15.g
ACCGA100602GA100603
length1,1581,191
definitionB6Ng01-307P15.b B6Ng01-307P15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagttcgaggccatcctatgctagagagtgacaccctgtctga
aaaacaaaatgacagggactgatgaggtggatcggttgctgaagtgcttg
caggtcaagtgtgaggatctgagttcggatccccagtacctgtgttaaag
ctaacagtgcatgtctgtaacttaaacactggggccaggtgggagacagg
aagccccttggaatcacaggccagtcctaacagaatgggtgagctctggg
ctcagtaagagatcttgtctctaaaaaaataaagtgaagagaaacgaaga
tacctaatgccaacctctgccctccacacacatgtacataatgcacccat
gcgcacacacatatgaacatggacatgaaccttagcaaatacacttgcaa
aatgacaaagcaggaaagtaacagactggtattcattctcctaccattca
aacgatcacatgttttcaaaaaaaaaaatcactctgtagtctctgaaaat
taagagactggcagttcatattatgtactggaaagagctaagacacagag
cctatttttaaaaattcataaagaaattagtgtaaagtctaagcatcaca
atgaattacgccccaagttatgaacactgccacctttcacactctctgct
ttactttaagcaattatttgattatacagtatgaaaaggtgacatttcat
taagctggagagacctaacatgctctgtaagcaggggaacccaagaaaga
gcccggtgacagttttcagttcggggatgtgcttcagtaccagttatcat
ctagggatgtgtcctgcacagctcagagatgtgagtaacatagatgcagc
tatcgccagtttaactcttggatgtctgaatctggtccagatgctgagtt
tgggaataataaaaacctttaaaataaagttgtacatgtgagtgaattaa
taataaacaaatcaataagggaaaaaaaaagaaattaagtgtggaaaata
tcagcaagcagttgccgtcaattcgttcagaaggtcccctttcaaaaaga
agcatcagaatgttgctttgttctcaatccaatggcaataaatcttggcg
ttggagaaaaaccccatgtgtccggccttaccatctcggagtggggaaat
tactagct
gaattcttcatctgcttcagagctactaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcaggttcaagacccttggaaaggcctg
tatacttattttgtgtaccatattttctctttgctcctactctctctccc
cgctttacttctgatagattgtcctgaatttcctctagaatcagccctat
cttaatcacttgataacatgtgaaaaggaacagaagggctcctaacacca
gaaaaaattcaaggccaaacatattccactttacttctgatagactgtct
tgaatttccttagaaagttcaagatcagacttacctcgtaaagctgtact
cactggtactctcgttccccagctgaaaagttctgaattcatacagttga
atccttcttaacagtctgctttacgggaacctttattaccgcgacccgca
gttctggttctggaatgagggatcttccttgcgccagtcccgagtttttt
ctcgtcccggaattcggcaccaattgttattagacgcgttctcacgaccg
gccaggaagaacacaacaaccagaatcttctacggcaaagctttattgct
tacatctttatcgggccagagtgtaagaagcaagagagcgcaagaagcaa
gagagagagaaaaacgaaaccccttctattttaaagagaacaaccattgc
ctagggcgcatcactccctgattggctgcagcccatgggccgagctgacg
ttcacgggaaaaacagagtacaagtagtcgtaaatacccttggctcatgc
gcagattatttgtttaccaactttagaacaccaggatgtcagcggccatc
ttgtgacggcgaaatgtggggggcggctttcccacatcattcttttaatg
ttagtgacccctgatggttctttcttgacctatgagacattggtggtggt
gatactgacaacattcccagctgggtgtgggtgatccagggttccggtga
gtgtcttgttgtgcacggccgtgcatgcgatgtgtgttaatgcatgccca
ttcagtgtatatggtgcgttggatgtaccagccatcacata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_43183666_43184800
seq2: B6Ng01-307P15.b_47_1204

seq1  GAATTCCAAGTTCGAGGCCATCCTATGCTAGAGAGTGACACCCTGTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTTCGAGGCCATCCTATGCTAGAGAGTGACACCCTGTCTGA  50

seq1  AAAACAAAATGACAGGGACTGATGAGGTGGATCGGTTGCTGAAGTGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAATGACAGGGACTGATGAGGTGGATCGGTTGCTGAAGTGCTTG  100

seq1  CAGGTCAAGTGTGAGGATCTGAGTTCGGATCCCCAGTACCTGTGTTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAAGTGTGAGGATCTGAGTTCGGATCCCCAGTACCTGTGTTAAAG  150

seq1  CTAACAGTGCATGTCTGTAACTTAAACACTGGGGCCAGGTGGGAGACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGTGCATGTCTGTAACTTAAACACTGGGGCCAGGTGGGAGACAGG  200

seq1  AAGCCCCTTGGAATCACAGGCCAGTCCTAACAGAATGGGTGAGCTCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCTTGGAATCACAGGCCAGTCCTAACAGAATGGGTGAGCTCTGGG  250

seq1  CTCAGTAAGAGATCTTGTCTCTAAAAAAATAAAGTGAAGAGAAACGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAAGAGATCTTGTCTCTAAAAAAATAAAGTGAAGAGAAACGAAGA  300

seq1  TACCTAATGCCAACCTCTGCCCTCCACACACATGTACATAATGCACCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAATGCCAACCTCTGCCCTCCACACACATGTACATAATGCACCCAT  350

seq1  GCGCACACACATATGAACATGGACATGAACCTTAGCAAATACACTTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACACACATATGAACATGGACATGAACCTTAGCAAATACACTTGCAA  400

seq1  AATGACAAAGCAGGAAAGTAACAGACTGGTATTCATTCTCCTACCATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAAAGCAGGAAAGTAACAGACTGGTATTCATTCTCCTACCATTCA  450

seq1  AACGATCACATGTTTTCAAAAAAAAAAATCACTCTGTAGTCTCTGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATCACATGTTTTCAAAAAAAAAAATCACTCTGTAGTCTCTGAAAAT  500

seq1  TAAGAGACTGGCAGTTCATATTATGTACTGGAAAGAGCTAAGACACAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGACTGGCAGTTCATATTATGTACTGGAAAGAGCTAAGACACAGAG  550

seq1  CCTATTTTTAAAAATTCATAAAGAAATTAGTGTAAAGTCTAAGCATCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTTTAAAAATTCATAAAGAAATTAGTGTAAAGTCTAAGCATCACA  600

seq1  ATGAATTACGCCCCAAGTTATGAACACTGCCACCTTTCACACTCTCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTACGCCCCAAGTTATGAACACTGCCACCTTTCACACTCTCTGCT  650

seq1  TTACTTTAAGCAATTATTTGATTATACAGTATGAAAAGGTGACATTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTAAGCAATTATTTGATTATACAGTATGAAAAGGTGACATTTCAT  700

seq1  TAAGCTGGAGAGACCTAACATGCTCTGTAAGCAGGGGAACCCAAGAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGGAGAGACCTAACATGCTCTGTAAGCAGGGGAACCCAAGAAAGA  750

seq1  GCCCGGTGACAGTTTTCAGTTCGGGGATGTGCTTCAGTACCAGTTATCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGTGACAGTTTTCAGTTCGGGGATGTGCTTCAGTACCAGTTATCAT  800

seq1  CTAGGGATGTGTCCTGCACAGCTCAGAGATGTGAGTAACATAGATGCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGATGTGTCCTGCACAGCTCAGAGATGTGAGTAACATAGATGCAGC  850

seq1  TATCGCCAGTTTAACTCTTGGATGTCTGAATCTGGTCCAGATGCTGAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGCCAGTTTAACTCTTGGATGTCTGAATCTGGTCCAGATGCTGAGTT  900

seq1  T-GGAATAATAAAAACCTTT-AAATAA--GTGTACATGTGAGTGAA-TAA  945
      | |||||||||||||||||| ||||||   |||||||||||||||| |||
seq2  TGGGAATAATAAAAACCTTTAAAATAAAGTTGTACATGTGAGTGAATTAA  950

seq1  TAATAAACAAATCAATA--GGGAAAAAAAAGAAATT-AGTGTGG-AAATA  991
      |||||||||||||||||  || |||||||||||||| ||||||| |||||
seq2  TAATAAACAAATCAATAAGGGAAAAAAAAAGAAATTAAGTGTGGAAAATA  1000

seq1  TCAGCAAGCAGTTGCCGTC-ATTCG-TCAGAAGGTCCCCTTTCAAAA--G  1037
      ||||||||||||||||||| ||||| |||||||||||||||||||||   
seq2  TCAGCAAGCAGTTGCCGTCAATTCGTTCAGAAGGTCCCCTTTCAAAAAGA  1050

seq1  AGCATCCAGATGTTGCTTTG-TCTCCATCCAATGGCAAT-AATCT--GCG  1083
      ||||||   ||||||||||| |||| ||||||||||||| |||||  |||
seq2  AGCATCAGAATGTTGCTTTGTTCTCAATCCAATGGCAATAAATCTTGGCG  1100

seq1  -TGGAGAAAA---CCCTGTGGCCGGCC-TACCATCCACGAGTGGGG-AAT  1127
       |||||||||   || |||| |||||| |||||||   |||||||| |||
seq2  TTGGAGAAAAACCCCATGTGTCCGGCCTTACCATCTCGGAGTGGGGAAAT  1150

seq1  TACTAGCT  1135
      ||||||||
seq2  TACTAGCT  1158