BAC Information

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BAC

Clone NameB6Ng01-308H04
Chromosome13 (Build37)
Map Location 113,557,218 - 113,699,721
singlet/doubletdoublet
Overlap genePpap2a, LOC100041282, Skiv2l2
Upstream geneMap3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik
Downstream geneDhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308H04.bB6Ng01-308H04.g
ACCGA100949GA100950
length1,110614
definitionB6Ng01-308H04.b B6Ng01-308H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,557,218 - 113,558,331)(113,699,109 - 113,699,721)
sequence
gaattctatatatgaatacagtgtagttcctaaaacttgtgatcattatt
taacttaattaattaattaattaaaataattaattagtgtgagtgtgaga
gatggctttagtcagtaagtgtagactctgacgccatcgcctacatttaa
attccagttcttcctccatgctctattatttattcattcgcctattgttg
ttaaggaaataggacatgcattgtccagctgacccctaactcctgggccc
aagtgatcctcctgcctcagcctctgaaatcacagggactacagaggcac
tcggtgctattcctgtctatgattcgctgtgatacttataaaatctttgt
gccattgccattcttgctcccttttcattttgaggcaactgacctttgag
gaaatgaagcatggtccgtttgcctgagttaaacactaatagatgctcaa
actaagacccaaagcctgttctgtctgtcttagccaaaggctaaggactg
agaccaggtctgtcttgccccaggcacatgtatttttccaccacagacat
atatatccattacaagcatccagtgacggcatgtcctgttatagtcactc
tgttttttctcaaatgcacccttctacagctttctacacaacatagttcc
tctttgttggcttgttccctggttgtgcctgccaatagggactgctggta
agcaagaccttgtttcttccagttgctttttgtgtcactagaatcaaccc
accaccctggcagtagcacatccttccagtaacaataatgtattccaatt
tgcatgttgtccatcacactaaaccaacacaactgcacccctgagtgaga
ccagtaccatctgactctattcctctctcctgaaccctgagaggccagca
gccttcttaccctacacccaatgttcccatctaagtaatcagcatctctc
tcatcatttcttcagctctaatgacattgtcactttcctgagccactagt
tctatgacagcataatgtctccttttgttttctagctcttagagactgca
aacaagtctttacattatcactatcggttgttctctgattgtactctgga
atgaccagca
gaattcactttcttccattctcaactgccggagaacaagcgctctgatgt
gccggatgatttatgtcttgttcagtttcaattctccttgaacagacttt
attatcacaaatcacttaagtggcctttgttaaaatcttgttgcattaaa
gtttgttctttggggctggagagatggcttagtggttaagagcactgact
gctcttccacagaggtcctgagttcaattcccagcaaccacgtggtggct
cacaaccatctgtaatgggatacattgacctcttgtgtgtctgaggacag
tgacagtgtactcacatacataaaaaaaattgttctttaaagaaacttta
tgtttaagaaatgtttaagttatggttaactatttgtgagtcgctccgtg
ttcccggaactgagcccaggccctctgtaagaacacacacacgtttagcc
actgagtcgtttctctagccttgattatcgatttgcaaagttatatagaa
aaaaatatgattctagggtgacttcagagaagataattataacactgcaa
tgcaagtgctgctggatacaggtgatttggccaaaggagacctgaatgga
cggaaaggaggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_113557218_113558331
seq2: B6Ng01-308H04.b_44_1153

seq1  GAATTCTATATATGAATACAGTGTAGTTCCTAAAACTTGTGATCATTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATATGAATACAGTGTAGTTCCTAAAACTTGTGATCATTATT  50

seq1  TAACTTAATTAATTAATTAATTAAAATAATTAATTAGTGTGAGTGTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAATTAATTAATTAATTAAAATAATTAATTAGTGTGAGTGTGAGA  100

seq1  GATGGCTTTAGTCAGTAAGTGTAGACTCTGACGCCATCGCCTACATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTTAGTCAGTAAGTGTAGACTCTGACGCCATCGCCTACATTTAA  150

seq1  ATTCCAGTTCTTCCTCCATGCTCTATTATTTATTCATTCGCCTATTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGTTCTTCCTCCATGCTCTATTATTTATTCATTCGCCTATTGTTG  200

seq1  TTAAGGAAATAGGACATGCATTGTCCAGCTGACCCCTAACTCCTGGGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAAATAGGACATGCATTGTCCAGCTGACCCCTAACTCCTGGGCCC  250

seq1  AAGTGATCCTCCTGCCTCAGCCTCTGAAATCACAGGGACTACAGAGGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATCCTCCTGCCTCAGCCTCTGAAATCACAGGGACTACAGAGGCAC  300

seq1  TCGGTGCTATTCCTGTCTATGATTCGCTGTGATACTTATAAAATCTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGCTATTCCTGTCTATGATTCGCTGTGATACTTATAAAATCTTTGT  350

seq1  GCCATTGCCATTCTTGCTCCCTTTTCATTTTGAGGCAACTGACCTTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGCCATTCTTGCTCCCTTTTCATTTTGAGGCAACTGACCTTTGAG  400

seq1  GAAATGAAGCATGGTCCGTTTGCCTGAGTTAAACACTAATAGATGCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAGCATGGTCCGTTTGCCTGAGTTAAACACTAATAGATGCTCAA  450

seq1  ACTAAGACCCAAAGCCTGTTCTGTCTGTCTTAGCCAAAGGCTAAGGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGACCCAAAGCCTGTTCTGTCTGTCTTAGCCAAAGGCTAAGGACTG  500

seq1  AGACCAGGTCTGTCTTGCCCCAGGCACATGTATTTTTCCACCACAGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGTCTGTCTTGCCCCAGGCACATGTATTTTTCCACCACAGACAT  550

seq1  ATATATCCATTACAAGCATCCAGTGACGGCATGTCCTGTTATAGTCACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCATTACAAGCATCCAGTGACGGCATGTCCTGTTATAGTCACTC  600

seq1  TGTTTTTTCTCAAATGCACCCTTCTACAGCTTTCTACACAACATAGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTCTCAAATGCACCCTTCTACAGCTTTCTACACAACATAGTTCC  650

seq1  TCTTTGTTGGCTTGTTCCCTGGTTGTGCCTGCCAATAGGGACTGCTGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTGGCTTGTTCCCTGGTTGTGCCTGCCAATAGGGACTGCTGGTA  700

seq1  AGCAAGACCTTGTTTCTTCCAGTTGCTTTTTGTGTCACTAGAATCAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGACCTTGTTTCTTCCAGTTGCTTTTTGTGTCACTAGAATCAACCC  750

seq1  ACCACCCTGGCAGTAGCACATCCTTCCAGTAACAATAATGTATTCCAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCTGGCAGTAGCACATCCTTCCAGTAACAATAATGTATTCCAATT  800

seq1  TGCATGTTGTCCATCACACTAAACCAACACAACTGCACCCCTGAGTGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTTGTCCATCACACTAAACCAACACAACTGCACCCCTGAGTGAGA  850

seq1  CCAGTACCATCTGACTCTATTCCTCTCTCCTGAACCCTGAGAGGCCAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACCATCTGACTCTATTCCTCTCTCCTGAACCCTGAGAGGCCAGCA  900

seq1  GCCTTCTTACCCTACACCCAATGTTCCCATCTAAGTAATCAGCATCTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTTACCCTACACCCAATGTTCCCATCTAAGTAATCAGCATCTCTC  950

seq1  TCATCATTTCTTCAGCTCTAATGACAATTGTCAC-TTCCTGAAGCCACTA  999
      ||||||||||||||||||||||||| |||||||| |||||| ||||||||
seq2  TCATCATTTCTTCAGCTCTAATGAC-ATTGTCACTTTCCTG-AGCCACTA  998

seq1  GTTCTATGACAGCATAATGTTCTCCTTTTGTTTTTCTAGCTC-TAGAGAC  1048
      ||||||||||||||||||| |||||||||| ||||||||||| |||||||
seq2  GTTCTATGACAGCATAATG-TCTCCTTTTG-TTTTCTAGCTCTTAGAGAC  1046

seq1  TTGGCAAACAAGTCTTTACATTATCACTATCGTTTGTCTCCTGGTTGTAC  1098
      |  ||||||||||||||||||||||||||||| ||||   ||| ||||||
seq2  T--GCAAACAAGTCTTTACATTATCACTATCGGTTGTTCTCTGATTGTAC  1094

seq1  TCTGG-ATGACACAGCA  1114
      ||||| ||||| |||||
seq2  TCTGGAATGAC-CAGCA  1110

seq1: chr13_113699109_113699721
seq2: B6Ng01-308H04.g_69_681 (reverse)

seq1  TTCCTCCTTTCCGTCCCTTCTGGTCTCCTTTGGCCAAATCACCTGCATCC  50
      |||||||||||||||| ||| |||||||||||||||||||||||| ||||
seq2  TTCCTCCTTTCCGTCCATTCAGGTCTCCTTTGGCCAAATCACCTGTATCC  50

seq1  CGCAGCACTTGCATTGCAGTGTTAAAATTATCTTCTCTGAAGTCACCCTA  100
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGCAGCACTTGCATTGCAGTGTTATAATTATCTTCTCTGAAGTCACCCTA  100

seq1  GAATCATATTTTTTTCTATATAACTTTGCAAATCGATAATCAAGGCTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATATTTTTTTCTATATAACTTTGCAAATCGATAATCAAGGCTAGA  150

seq1  GAAACGACTCAGTGGCTAAACGTGTGTGTGTTCTTACAGAGGGCCTGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGACTCAGTGGCTAAACGTGTGTGTGTTCTTACAGAGGGCCTGGGC  200

seq1  TCAGTTCCGGGAACACGGAGCGACTCACAAATAGTTAACCATAACTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCGGGAACACGGAGCGACTCACAAATAGTTAACCATAACTTAAA  250

seq1  CATTTCTTAAACATAAAGTTTCTCTAAAGAACAATTTTTTTTATGTATGT  300
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATTTCTTAAACATAAAGTTTCTTTAAAGAACAATTTTTTTTATGTATGT  300

seq1  GAGTACACTGTCACTGTCCTCAGACACACAAGAGGTCAATGTATCCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACTGTCACTGTCCTCAGACACACAAGAGGTCAATGTATCCCATT  350

seq1  ACAGATGGTTGTGAGCCACCACGTGGTTGCTGGGAATTGAACTCAGGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGTTGTGAGCCACCACGTGGTTGCTGGGAATTGAACTCAGGACC  400

seq1  TCTGTGGAAGAGCAGTCAGTGCTCTTAACCACTAAGCCATCTCTCCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGAAGAGCAGTCAGTGCTCTTAACCACTAAGCCATCTCTCCAGCC  450

seq1  CCAAAGAACAAACTTTAATGCAACAAGATTTTAACAAAGGCCACTTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAACAAACTTTAATGCAACAAGATTTTAACAAAGGCCACTTAAGT  500

seq1  GATTTGTGATAATAAAGTCTGTTCAAGGAGAATTGAAACTGAACAAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTGATAATAAAGTCTGTTCAAGGAGAATTGAAACTGAACAAGACA  550

seq1  TAAATCATCCGGCACATCAGAGCGCTTGTTCTCCGGCAGTTGAGAATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCATCCGGCACATCAGAGCGCTTGTTCTCCGGCAGTTGAGAATGGA  600

seq1  AGAAAGTGAATTC  613
      |||||||||||||
seq2  AGAAAGTGAATTC  613