BAC Information

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BAC

Clone NameB6Ng01-309N21
Chromosome13 (Build37)
Map Location 87,051,456 - 87,201,183
singlet/doubletdoublet
Overlap genenone
Upstream geneCox7c, LOC100042887, LOC100042893
Downstream geneLOC675707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309N21.bB6Ng01-309N21.g
ACCGA102000GA102001
length8061,062
definitionB6Ng01-309N21.b B6Ng01-309N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,051,456 - 87,052,243)(87,200,117 - 87,201,183)
sequence
gaattcacatttactctttactccaaaccctgcctacactttcaaacaat
gcagtgaagagctaaaaaacttttcagccacaaaacctaaaacaaggatg
cagctacagctcaagaagaaggtttcacaattaaacttttgtcaaggatt
ttgctttgtacctaaaagacttgccaaatgcaacaaaagaaattgttttg
tagaaaaataatgggattcatagtctctacagtttgacacttagacaagt
tgggatacaattaaactttcagagagagatgaagaataatgaaaacagaa
aaatagtctaagagaaaggaaaataaacagaatctgagccgcagatgaac
ttttcactgtatatagaatgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaagaaagaaaaagaaaagaaaaaaaaattgtgaagtagctactg
tagctatcttcaccgaacacattcctaataaagtcatccctatccggtcc
tgggagcctctggcttccctgacatttgggacatgctagtggctactgtc
agttcttcatcccccactggtacatatttttatttaattttctgacactc
tgtacttctctcctgtctcttccaatagctaaaccaccaaccaaggagta
taatacagggatccatggccccagatacatatgtagcagaggacagcttt
atctgacatcaataggaggggaggtccttggtcctgtggaggtttgatgc
tacagcatagggttatgcaacagcaggaggcaggaaaggatgggtgggtt
ggaaga

gaattcctatgtcatccttgtatgacataggaacagagcttcagaaaata
gtgagttccaggcatgtacaaatagctgctgtgcttactggaggaagagc
tctgagaggaaagcctcagtgaaataaattcaaatagcatatgagaaact
taaattaaaattcacagaacatactcaaagttacttgaaccaatttcttc
aggtcttaaaacaaatagacttatttaagcttataatttttgaaaaacct
gtgagatgttttatttgtatgtgaatatatcattaattttatagagtaaa
aagtacagttctgaattaattctaccactttacgatagataaataagcct
ctacttgttagattgaattgacaatgtgagcttacaaacatgaataattc
tttgctttcaatttgaatattttgttttattaaagaaaaatgtattcata
cagtatattctgattattgtttctgttcttccagctgctccccactgaac
ctcccatctacatccttactatttctgtcttttgttagaaaacaagcagg
tttctaaagggtaataaaataataacaatacgataagatatatcacaaac
aaattgaaatacaacaaaaaaagcaaataaggaaacagccaaagaaaaag
caaaagaaacatatatatgaaaagatatatgctcacatacccagggagta
actccatagaaatcctaactagagtgattttctttataacacacacacac
acacacacacacacacacggttaaaatgttttctttataactatataata
ttactttttctttcatttgaaaacaatggctaactaaaatacttatatgg
aaatatatagctttttatagtagtgataaatagttaatctgctctgtgct
ttttgctgatgatcacacttttgttacctgccagagtagtctggattcat
gaatgaaaggcacatacatacacactcacacacactcacacacacacaca
cagctcacatacacagtgttattctatattgccttagtagctaacgactg
ggattctcccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_87051456_87052243
seq2: B6Ng01-309N21.b_47_852

seq1  GAATTCACATTTACTCTTTACTCCAAACCCTGCCTACACTTTCAAACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTACTCTTTACTCCAAACCCTGCCTACACTTTCAAACAAT  50

seq1  GCAGTGAAGAGCTAAAAAACTTTTCAGCCACAAAACCTAAAACAAGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAAGAGCTAAAAAACTTTTCAGCCACAAAACCTAAAACAAGGATG  100

seq1  CAGCTACAGCTCAAGAAGAAGGTTTCACAATTAAACTTTTGTCAAGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACAGCTCAAGAAGAAGGTTTCACAATTAAACTTTTGTCAAGGATT  150

seq1  TTGCTTTGTACCTAAAAGACTTGCCAAATGCAACAAAAGAAATTGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGTACCTAAAAGACTTGCCAAATGCAACAAAAGAAATTGTTTTG  200

seq1  TAGAAAAATAATGGGATTCATAGTCTCTACAGTTTGACACTTAGACAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAATAATGGGATTCATAGTCTCTACAGTTTGACACTTAGACAAGT  250

seq1  TGGGATACAATTAAACTTTCAGAGAGAGATGAAGAATAATGAAAACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATACAATTAAACTTTCAGAGAGAGATGAAGAATAATGAAAACAGAA  300

seq1  AAATAGTCTAAGAGAAAGGAAAATAAACAGAATCTGAGCCGCAGATGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTCTAAGAGAAAGGAAAATAAACAGAATCTGAGCCGCAGATGAAC  350

seq1  TTTTCACTGTATATAGAATGC------------------AAAAAAAAAAA  382
      |||||||||||||||||||||                  |||||||||||
seq2  TTTTCACTGTATATAGAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  400

seq1  AAAAAAAAGAAAGAAAAAGAAAAGAAAAAAAAATTGTGAAGTAGCTACTG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAAAGAAAAAGAAAAGAAAAAAAAATTGTGAAGTAGCTACTG  450

seq1  TAGCTATCTTCACCGAACACATTCCTAATAAAGTCATCCCTATCCGGTCC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATCTTCACCGAACACATTCCTAATAAAGTCATCCCTATCCGGTCC  500

seq1  TGGGAGCCTCTGGCTTCCCTGACATTTGGGACATGCTAGTGGCTACTGTC  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCCTCTGGCTTCCCTGACATTTGGGACATGCTAGTGGCTACTGTC  550

seq1  AGTTCTTCATCCCCCACTGGTACATATTTTTATTTAATTTTCTGACACTC  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCATCCCCCACTGGTACATATTTTTATTTAATTTTCTGACACTC  600

seq1  TGTACTTCTCTCCTGTCTCTTCCAATAGCTAAACCACCAACCAAGGAGTA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCTCTCCTGTCTCTTCCAATAGCTAAACCACCAACCAAGGAGTA  650

seq1  TAATACAGGGATCCATGGCCCCAGATACATATGTAGCAGAGGACAGCTTT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAGGGATCCATGGCCCCAGATACATATGTAGCAGAGGACAGCTTT  700

seq1  ATCTGACATCAATAGGAGGGGAGGTCCTTGGTCCTGTGGAGGTTTGATGC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACATCAATAGGAGGGGAGGTCCTTGGTCCTGTGGAGGTTTGATGC  750

seq1  TACAGCATAGGGTTATGCAACAGCAGGGAGGCAGGAAAGGATGGGTGGG-  781
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  TACAGCATAGGGTTATGCAACAGCA-GGAGGCAGGAAAGGATGGGTGGGT  799

seq1  TGGAAGA  788
      |||||||
seq2  TGGAAGA  806


seq1: chr13_87200117_87201183
seq2: B6Ng01-309N21.g_67_1128 (reverse)

seq1  TAGGGAGAATCCCAGTCGTTAAGCTACTAAGGCATATTAAGAATAACACT  50
      |||||||||||||||||||| ||||||||||||| ||  |||||||||||
seq2  TAGGGAGAATCCCAGTCGTT-AGCTACTAAGGCA-ATATAGAATAACACT  48

seq1  GTGTATGTGAGTTTGTGTGTGTTTGTGTGTGAGTGTGTGTGAGTGTGTAT  100
      |||||||||||    ||||||| |||||||||||||||||||||||||||
seq2  GTGTATGTGAG---CTGTGTGTGTGTGTGTGAGTGTGTGTGAGTGTGTAT  95

seq1  GTATGTGCCTTTCATTCATGAATCCAGACTACTCTGGCAGGTAACAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGCCTTTCATTCATGAATCCAGACTACTCTGGCAGGTAACAAAAG  145

seq1  TGTGATCATCAGCAAAAAGCACAGAGCAGATTAACTATTTATCACTACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCATCAGCAAAAAGCACAGAGCAGATTAACTATTTATCACTACTA  195

seq1  TAAAAAGCTATATATTTCCATATAAGTATTTTAGTTAGCCATTGTTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCTATATATTTCCATATAAGTATTTTAGTTAGCCATTGTTTTCA  245

seq1  AATGAAAGAAAAAGTAATATTATATAGTTATAAAGAAAACATTTTAACCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGAAAAAGTAATATTATATAGTTATAAAGAAAACATTTTAACCG  295

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATAAAGAAAATCACTCTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATAAAGAAAATCACTCTAGT  345

seq1  TAGGATTTCTATGGAGTTACTCCCTGGGTATGTGAGCATATATCTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTTCTATGGAGTTACTCCCTGGGTATGTGAGCATATATCTTTTCA  395

seq1  TATATATGTTTCTTTTGCTTTTTCTTTGGCTGTTTCCTTATTTGCTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTTTCTTTTGCTTTTTCTTTGGCTGTTTCCTTATTTGCTTTTT  445

seq1  TTGTTGTATTTCAATTTGTTTGTGATATATCTTATCGTATTGTTATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTATTTCAATTTGTTTGTGATATATCTTATCGTATTGTTATTATT  495

seq1  TTATTACCCTTTAGAAACCTGCTTGTTTTCTAACAAAAGACAGAAATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACCCTTTAGAAACCTGCTTGTTTTCTAACAAAAGACAGAAATAGT  545

seq1  AAGGATGTAGATGGGAGGTTCAGTGGGGAGCAGCTGGAAGAACAGAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTAGATGGGAGGTTCAGTGGGGAGCAGCTGGAAGAACAGAAACA  595

seq1  ATAATCAGAATATACTGTATGAATACATTTTTCTTTAATAAAACAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAGAATATACTGTATGAATACATTTTTCTTTAATAAAACAAAATA  645

seq1  TTCAAATTGAAAGCAAAGAATTATTCATGTTTGTAAGCTCACATTGTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTGAAAGCAAAGAATTATTCATGTTTGTAAGCTCACATTGTCAA  695

seq1  TTCAATCTAACAAGTAGAGGCTTATTTATCTATCGTAAAGTGGTAGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCTAACAAGTAGAGGCTTATTTATCTATCGTAAAGTGGTAGAATT  745

seq1  AATTCAGAACTGTACTTTTTACTCTATAAAATTAATGATATATTCACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAACTGTACTTTTTACTCTATAAAATTAATGATATATTCACATA  795

seq1  CAAATAAAACATCTCACAGGTTTTTCAAAAATTATAAGCTTAAATAAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAACATCTCACAGGTTTTTCAAAAATTATAAGCTTAAATAAGTC  845

seq1  TATTTGTTTTAAGACCTGAAGAAATTGGTTCAAGTAACTTTGAGTATGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTTTAAGACCTGAAGAAATTGGTTCAAGTAACTTTGAGTATGTT  895

seq1  CTGTGAATTTTAATTTAAGTTTCTCATATGCTATTTGAATTTATTTCACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATTTTAATTTAAGTTTCTCATATGCTATTTGAATTTATTTCACT  945

seq1  GAGGCTTTCCTCTCAGAGCTCTTCCTCCAGTAAGCACAGCAGCTATTTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTTCCTCTCAGAGCTCTTCCTCCAGTAAGCACAGCAGCTATTTGT  995

seq1  ACATGCCTGGAACTCACTATTTTCTGAAGCTCTGTTCCTATGTCATACAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCTGGAACTCACTATTTTCTGAAGCTCTGTTCCTATGTCATACAA  1045

seq1  GGATGACATAGGAATTC  1067
      |||||||||||||||||
seq2  GGATGACATAGGAATTC  1062


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