BAC Information

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BAC

Clone NameB6Ng01-314P15
Chromosome13 (Build37)
Map Location 23,461,902 - 23,637,366
singlet/doubletdoublet
Overlap geneAbt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f
Upstream geneV1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a
Downstream geneHist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314P15.bB6Ng01-314P15.g
ACCGA105749GA105750
length1,0821,078
definitionB6Ng01-314P15.b B6Ng01-314P15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,636,285 - 23,637,366)(23,461,902 - 23,462,990)
sequence
gaattctttaaaaccaggaaatcaacggtagtttaatctttatgttaaac
cgtccaatactattaaactcggctaggtagcagcactggcttgtaatacc
atctcagtggtatactcaattaaatgataaactgagccaggcacagacct
ttttaatcccagataaggaaaacggaaaccatagacaaggagaatcgtgc
tttaaaaacaaaactaaccaaaataaggtaaaaataattgaaatgccaac
aatgtaacaagtttgaatggtgaaacaaagtaaaacgttaactctgttgg
acttttactgtgtggattgtaacacaatcccaaactgaagtgcgtacctg
tttctggcttaaaatggctaccccaactctagttgaaagcatacaagatg
aaatgatatcctgaaagccttgtttccaaaaacaggcagctcagactgct
tcgtcgggtggtgctcatcattgtcaagaaaggctataataggaaaccct
ggaacactctacaaacttgtactacagcatctttggtggataatggaggt
ggctcttaaaagagccgttttggtttacgtgccagtgtagaaagcgtgcc
tattaagcccgctcgccgcggatacggcgggccagctggatgtccttggg
catgatggtgacacgcttggcgtggatggcgcacaggttggtgtcctcaa
acagacccacaaggtaggcctcgctcgcctcctgcagagccatgacggcc
gagctctggaagcgcaggtcggtcttgaagtcctgcgcgatctcgcgcac
caggcgctggaacggcagcttgcggatcagcagctcggtcgacttctggt
agcgccggatctcgcgcagcgccacggtgcccggacggtagcggtgaggt
ttcttcacgccgccggtggccggggcgctcttgcgggcggccttggtggc
cagctgcttgcgcggggcccttgccgccagtggacttgcgagcggtctgc
ttagtacgagccatttctacaaagaaaataggaaatgcagaggtagtctg
gcttcctttttatagaaggaacatgctcctga
gaattctctggtctggagaagaacttggattggctgttaaattctagagt
tagggtctgaggatggcaattatgtattctgaattcactaattcctgttt
tcagaatttgcagaatttctgcagcttattttaaattaaaattttaagac
aaaaaatcccaccagtgtcattcaaatatttaagttttttttcttagact
tattttctatgtatgggtgttttatcagcatatatgtgcacgtggtgtgt
gcgcgcgcactctaggaggatgtcagatcccctggaactggaataatgca
tggtttatgagctaccatgtgagtgctggctggaaaatgaaccagggtca
tcagcaagagcaagtggtcttaaatgctgagccatctctctagccctaat
tttaatatttaaataactttttattaactgtttttagtgtaagatgtacc
aaacacaattcgaatcacactatagaatgagctgtgtatggctatattag
gaagaaatgtacacatgttattgcaggagagtatgtgtttatgccatccc
cttcagctataagagtgttgagacaatggactcaaaggattggaattgtg
ataggagtcttctgctgagaacaaggaaaggactagggccttggccagtg
ggagagttagggcaggatttcacacagtcctgactgtgatgagtggggct
acttatgattgtagctaccaggactccttacttatgcacatctcatgacc
tttaaaatattctgaacgtcgtgttagtggttgaacccctttacttactc
ctcttcctagtgtgaccatattgagtaaaccgctttcactgctttgtctt
gcttgtctttttgacaaattgaagacaggtagctgagcctagcttggtag
agctaccaaggtccatgcatagactcttaacagccactgtaaacccggaa
gattaacttgcgacttatacatttaataacggagctgattgaacagatca
attactggagcgcgcatactatggctactcagagtattgtggggtagtgc
tgaacaggcacattacgagtgtgataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23636285_23637366
seq2: B6Ng01-314P15.b_45_1126 (reverse)

seq1  TCAGGAGCATGTTCCTTCTAT-AAAAGGAACCCAGAACCTAACCTCTGCA  49
      ||||||||||||||||||||| |||||||| |||||  || |||||||||
seq2  TCAGGAGCATGTTCCTTCTATAAAAAGGAAGCCAGA--CT-ACCTCTGCA  47

seq1  TTTCCTA-TTTCTTTGTAGAAATGGCTCGTACTAAGCAGACCGCTCGCAA  98
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATTTTCTTTGTAGAAATGGCTCGTACTAAGCAGACCGCTCGCAA  97

seq1  GTCCACTGGCGGCAA-GGCCCCGCGCAAGCAGCTGGCCACCAAGGCCGCC  147
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTCCACTGGCGGCAAGGGCCCCGCGCAAGCAGCTGGCCACCAAGGCCGCC  147

seq1  CGCAAGAGCGCCCCGGCCACCGGCGGCGTGAAGAAACCTCACCGCTACCG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAGAGCGCCCCGGCCACCGGCGGCGTGAAGAAACCTCACCGCTACCG  197

seq1  TCCCGGCACCGTGGCGCTGCGCGAGATCCGGCGCTACCAGAAGTCGACCG  247
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGCACCGTGGCGCTGCGCGAGATCCGGCGCTACCAGAAGTCGACCG  247

seq1  AGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGCGAGATCGCG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGCGAGATCGCG  297

seq1  CAGGACTTCAAGACCGACCTGCGCTTCCAGAGCTCGGCCGTCATGGCTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTCAAGACCGACCTGCGCTTCCAGAGCTCGGCCGTCATGGCTCT  347

seq1  GCAGGAGGCGAGCGAGGCCTACCTTGTGGGTCTGTTTGAGGACACCAACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGCGAGCGAGGCCTACCTTGTGGGTCTGTTTGAGGACACCAACC  397

seq1  TGTGCGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAGGACATCCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAGGACATCCAG  447

seq1  CTGGCCCGCCGTATCCGCGGCGAGCGGGCTTAATAGGCACGCTTTCTACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCGCCGTATCCGCGGCGAGCGGGCTTAATAGGCACGCTTTCTACA  497

seq1  CTGGCACGTAAACCAAAACGGCTCTTTTAAGAGCCACCTCCATTATCCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACGTAAACCAAAACGGCTCTTTTAAGAGCCACCTCCATTATCCAC  547

seq1  CAAAGATGCTGTAGTACAAGTTTGTAGAGTGTTCCAGGGTTTCCTATTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGCTGTAGTACAAGTTTGTAGAGTGTTCCAGGGTTTCCTATTAT  597

seq1  AGCCTTTCTTGACAATGATGAGCACCACCCGACGAAGCAGTCTGAGCTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCTTGACAATGATGAGCACCACCCGACGAAGCAGTCTGAGCTGC  647

seq1  CTGTTTTTGGAAACAAGGCTTTCAGGATATCATTTCATCTTGTATGCTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTGGAAACAAGGCTTTCAGGATATCATTTCATCTTGTATGCTTT  697

seq1  CAACTAGAGTTGGGGTAGCCATTTTAAGCCAGAAACAGGTACGCACTTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAGAGTTGGGGTAGCCATTTTAAGCCAGAAACAGGTACGCACTTCA  747

seq1  GTTTGGGATTGTGTTACAATCCACACAGTAAAAGTCCAACAGAGTTAACG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGATTGTGTTACAATCCACACAGTAAAAGTCCAACAGAGTTAACG  797

seq1  TTTTACTTTGTTTCACCATTCAAACTTGTTACATTGTTGGCATTTCAATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTGTTTCACCATTCAAACTTGTTACATTGTTGGCATTTCAATT  847

seq1  ATTTTTACCTTATTTTGGTTAGTTTTGTTTTTAAAGCACGATTCTCCTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACCTTATTTTGGTTAGTTTTGTTTTTAAAGCACGATTCTCCTTG  897

seq1  TCTATGGTTTCCGTTTTCCTTATCTGGGATTAAAAAGGTCTGTGCCTGGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGTTTCCGTTTTCCTTATCTGGGATTAAAAAGGTCTGTGCCTGGC  947

seq1  TCAGTTTATCATTTAATTGAGTATACCACTGAGATGGTATTACAAGCCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTATCATTTAATTGAGTATACCACTGAGATGGTATTACAAGCCAG  997

seq1  TGCTGCTACCTAGCCGAGTTTAATAGTATTGGACGGTTTAACATAAAGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTACCTAGCCGAGTTTAATAGTATTGGACGGTTTAACATAAAGAT  1047

seq1  TAAACTACCGTTGATTTCCTGGTTTTAAAGAATTC  1082
      |||||||||||||||||||||||||||||||||||
seq2  TAAACTACCGTTGATTTCCTGGTTTTAAAGAATTC  1082

seq1: chr13_23461902_23462990
seq2: B6Ng01-314P15.g_69_1146

seq1  GAATTCTCTGGTCTGGAGAAGAACTTGGATTGGCTGTTAAATTCTAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTCTGGAGAAGAACTTGGATTGGCTGTTAAATTCTAGAGT  50

seq1  TAGGGTCTGAGGATGGCAATTATGTATTCTGAATTCACTAATTCCTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCTGAGGATGGCAATTATGTATTCTGAATTCACTAATTCCTGTTT  100

seq1  TCAGAATTTGCAGAATTTCTGCAGCTTATTTTAAATTAAAATTTTAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTTGCAGAATTTCTGCAGCTTATTTTAAATTAAAATTTTAAGAC  150

seq1  AAAAAATCCCACCAGTGTCATTCAAATATTTAAGTTTTTTTTCTTAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCCCACCAGTGTCATTCAAATATTTAAGTTTTTTTTCTTAGACT  200

seq1  TATTTTCTATGTATGGGTGTTTTATCAGCATATATGTGCACGTGGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTATGTATGGGTGTTTTATCAGCATATATGTGCACGTGGTGTGT  250

seq1  GCGCGCGCACTCTAGGAGGATGTCAGATCCCCTGGAACTGGAATAATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCGCACTCTAGGAGGATGTCAGATCCCCTGGAACTGGAATAATGCA  300

seq1  TGGTTTATGAGCTACCATGTGAGTGCTGGCTGGAAAATGAACCAGGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATGAGCTACCATGTGAGTGCTGGCTGGAAAATGAACCAGGGTCA  350

seq1  TCAGCAAGAGCAAGTGGTCTTAAATGCTGAGCCATCTCTCTAGCCCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAGAGCAAGTGGTCTTAAATGCTGAGCCATCTCTCTAGCCCTAAT  400

seq1  TTTAATATTTAAATAACTTTTTATTAACTGTTTTTAGTGTAAGATGTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATTTAAATAACTTTTTATTAACTGTTTTTAGTGTAAGATGTACC  450

seq1  AAACACAATTCGAATCACACTATAGAATGAGCTGTGTATGGCTATATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAATTCGAATCACACTATAGAATGAGCTGTGTATGGCTATATTAG  500

seq1  GAAGAAATGTACACATGTTATTGCAGGAGAGTATGTGTTTATGCCATCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATGTACACATGTTATTGCAGGAGAGTATGTGTTTATGCCATCCC  550

seq1  CTTCAGCTATAAGAGTGTTGAGACAATGGACTCAAAGGATTGGAATTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTATAAGAGTGTTGAGACAATGGACTCAAAGGATTGGAATTGTG  600

seq1  ATAGGAGTCTTCTGCTGAGAACAAGGAAAGGACTAGGGCCTTGGCCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGTCTTCTGCTGAGAACAAGGAAAGGACTAGGGCCTTGGCCAGTG  650

seq1  GGAGAGTTAGGGCAGGATTTCACACAGTCCTGACTGTGATGAGTGGGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTTAGGGCAGGATTTCACACAGTCCTGACTGTGATGAGTGGGGCT  700

seq1  ACTTATGATTGTAGCTACCAGGACTCCTTACTTATGCACATCTCATGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGATTGTAGCTACCAGGACTCCTTACTTATGCACATCTCATGACC  750

seq1  TTTAAAATATTCTGAACGTCGTGTTAGTGGTTGAACCCCTTTACTTACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATATTCTGAACGTCGTGTTAGTGGTTGAACCCCTTTACTTACTC  800

seq1  CTCTTCCTAGTGTGACCATATTGAGTAAACCGCTTTCACTGCTTTGTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTAGTGTGACCATATTGAGTAAACCGCTTTCACTGCTTTGTCTT  850

seq1  GCTTGTCTTTTTGACAAATTGAAGACAGGTAGCTGAGCCTAGCTTGGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTTTTTGACAAATTGAAGACAGGTAGCTGAGCCTAGCTTGGTAG  900

seq1  AGCTACCAAGGTCCATGCATAGACTCTTAACAGCCACTGTAAA-CCGGAA  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCTACCAAGGTCCATGCATAGACTCTTAACAGCCACTGTAAACCCGGAA  950

seq1  GATTAACTTGCCGACTTATACATTTAATAACGGGAAGCTGATTTGAACCA  999
      |||||||||| ||||||||||||||||||||||  |||||| ||||| ||
seq2  GATTAACTTG-CGACTTATACATTTAATAACGG--AGCTGA-TTGAA-CA  995

seq1  GAATCAATTACTGGAGCCGCCGCCATACTTATGGCTACCTCAGAGTATTG  1049
      | |||||||||||||| |||   ||||| |||||||| ||||||||||||
seq2  G-ATCAATTACTGGAG-CGC--GCATAC-TATGGCTA-CTCAGAGTATTG  1039

seq1  TGGGGAAGTGCTGGACA-GCACATTACGAAGGTGTGATAAG  1089
      ||||| ||||||| ||| |||||||||||  ||||||||||
seq2  TGGGGTAGTGCTGAACAGGCACATTACGA--GTGTGATAAG  1078