BAC Information

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BAC

Clone NameB6Ng01-316B16
Chromosome13 (Build37)
Map Location 56,387,386 - 56,573,018
singlet/doubletdoublet
Overlap geneCxcl14, LOC100040926, AU042651
Upstream geneNsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1
Downstream geneIl9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7, LOC100040995, Spock1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316B16.bB6Ng01-316B16.g
ACCGA106583GA106584
length1,034996
definitionB6Ng01-316B16.b B6Ng01-316B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,387,386 - 56,388,130)(56,572,037 - 56,573,018)
sequence
gaattcaaatctggacccactctcagttaaataattctaagaggagtatt
tttatttcttcgactgtggcctaaaactattaggtagaaaattctggaaa
tacatgatacctcagcttgtaggccatagcatggtgaaagcatgcagctt
cctgctctgtccttcagggacacggatggcctttttgtccagagattcca
tgcagaatgctctgcctttccgttcctcggggtgatttttggttatcaga
tcagccattgcagtattggggtgtttgtgtgactaactcttattttgctt
agtaatgagggtgaggcagcggtaactgatacatgccagtgaattgccaa
aagtgcttcctttaagtgaacaaggtgacgtcctattgtgattctctgat
gctatcataactaccataacccaaagcaactcaggaagcaaagacttttc
ttagcttacaggtcacaagccactatcgatggaagcagaggcaggaaccc
agaggcaggaactgagaaaccgttgaggtatagcttactggctcagtgcc
cagggcttgctcaggtacctttcttatacagcttagaccctcctgcctag
ggatggcacctctcacagtgggctgatgtagcatttgtcaaatgctccac
caaccagcatttaagaaaatgcttcattgacacagccacaggccagtctg
atacaggcaattctccagttgtggttctctcttcccagggtctaggtttg
tagtcagttgacagctgaagctgtgataggcaaggttggcttgtggtttt
tgataatcaaacccagggcctccccggtaccaacatgagctcaactgctg
agctccatgcccagtctagttttagattccacagggtaaagaaatgttgc
ttttgcagaaagctggtcatctagagtgggatgagttttggtcttctggt
tgtatcccagttgaaaagtgaaaccttttccagcctcacagccatcagta
acctgccaatccctacgggatctggaatgccctc
gaattctagtgaaaggctgcaaaggtttatttaaggccagcttctaggtt
ctctgtggtcagcctggctgcgggccctctctgcttgcatctaggaccca
gcatgctgcactgtctgcctgtgcttcccagcagcccctgcagtgtgggg
ttggaggatataagtcagggcttctaggcttccctaatggtggccatcct
ccttggaagaactggttggccacggaggcagagtaacaggcttctcgctg
atgtgaaaatccagtgaccgattccctccatctttggagcttggcaagtg
acacattagagcccaggaaggagcagcaacagcggggagagacagtgctg
agtcaccatcatgaaaagggtggagagaggagacctgttgtccagggcca
tccactgggaagaaagcagggcaaccggggcagctagggggtggtcctta
gtaggtagaccacatctcagcaaaagaatcaagctgccttcctggaggag
gagtccctggaggacaaataactggtgaaaccaagaccaagagggagttg
gctcaaggcaccatgggaatacagacgggagggcgtggcggttaggggtg
gcaagaggtacaggcagaagtggggtgttcaggatggggggagcctgact
ggaggatgaggtggcaagatgaactgacttccaggaactgctgagagcat
ttgagcaagcagtcagctgtgcagagctatactgatccttccttgtgaga
aaggaaaagaggagactccgattgtaagtggccatccttcagagctttgc
aaaggagcaaagcatgcttagtcggaagaggggagatggcctttgtgtga
gcttggggtgggccactgggggatagtgtccacatgatcatagatcacct
atggtttaagaaagagggctataaggcacttctctccagggctgcggaaa
gctggcgagggggaaaccaaaagcaaggcggacatgggctgtgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_56387386_56388130
seq2: B6Ng01-316B16.b_324_1081

seq1  GTGTGACTAACTCTTATTTTGCTTAGTAATGAGGGTGAGGCAGCGGTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACTAACTCTTATTTTGCTTAGTAATGAGGGTGAGGCAGCGGTAAC  50

seq1  TGATACATGCCAGTGAATTGCCAAAAGTGCTTCCTTTAAGTGAACAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATGCCAGTGAATTGCCAAAAGTGCTTCCTTTAAGTGAACAAGGT  100

seq1  GACGTCCTATTGTGATTCTCTGATGCTATCATAACTACCATAACCCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCCTATTGTGATTCTCTGATGCTATCATAACTACCATAACCCAAAG  150

seq1  CAACTCAGGAAGCAAAGACTTTTCTTAGCTTACAGGTCACAAGCCACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAGGAAGCAAAGACTTTTCTTAGCTTACAGGTCACAAGCCACTAT  200

seq1  CGATGGAAGCAGAGGCAGGAACCCAGAGGCAGGAACTGAGAAACCGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGAAGCAGAGGCAGGAACCCAGAGGCAGGAACTGAGAAACCGTTGA  250

seq1  GGTATAGCTTACTGGCTCAGTGCCCAGGGCTTGCTCAGGTACCTTTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGCTTACTGGCTCAGTGCCCAGGGCTTGCTCAGGTACCTTTCTTA  300

seq1  TACAGCTTAGACCCTCCTGCCTAGGGATGGCACCTCTCACAGTGGGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTAGACCCTCCTGCCTAGGGATGGCACCTCTCACAGTGGGCTGA  350

seq1  TGTAGCATTTGTCAAATGCTCCACCAACCAGCATTTAAGAAAATGCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCATTTGTCAAATGCTCCACCAACCAGCATTTAAGAAAATGCTTCA  400

seq1  TTGACACAGCCACAGGCCAGTCTGATACAGGCAATTCTCCAGTTGTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACAGCCACAGGCCAGTCTGATACAGGCAATTCTCCAGTTGTGGTT  450

seq1  CTCTCTTCCCAGGGTCTAGGTTTGTAGTCAGTTGACAGCTGAAGCTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCCCAGGGTCTAGGTTTGTAGTCAGTTGACAGCTGAAGCTGTGA  500

seq1  TAGGCAAGGTTGGCTTGTGGTTTTTGATAATCAAACCCAGGGCCTCCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAGGTTGGCTTGTGGTTTTTGATAATCAAACCCAGGGCCTCCCCG  550

seq1  GTACCAACATGAGCTCAACTGCTGAGCTCCATGCCCAGTCTAGTTTTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAACATGAGCTCAACTGCTGAGCTCCATGCCCAGTCTAGTTTTAGA  600

seq1  TTCCACA-GGTAAAGAAATGTTGC-TTTGCAG-AAGCTGGTCATCTAGAG  647
      ||||||| |||||||||||||||| ||||||| |||||||||||||||||
seq2  TTCCACAGGGTAAAGAAATGTTGCTTTTGCAGAAAGCTGGTCATCTAGAG  650

seq1  TGGGATGAG-TTTGGTCTTCT-GTTGTAT-CCAGTTGATAAGTGAAAC--  692
      ||||||||| ||||||||||| ||||||| |||||||| |||||||||  
seq2  TGGGATGAGTTTTGGTCTTCTGGTTGTATCCCAGTTGAAAAGTGAAACCT  700

seq1  TTTCCAG-CTCACAGCCATCAGTAA-CTGCCA--TCCTACGGGATCTGG-  737
      ||||||| ||||||||||||||||| ||||||   |||||||||||||| 
seq2  TTTCCAGCCTCACAGCCATCAGTAACCTGCCAATCCCTACGGGATCTGGA  750

seq1  ATGCCCTC  745
      ||||||||
seq2  ATGCCCTC  758

seq1: chr13_56572037_56573018
seq2: B6Ng01-316B16.g_69_1064 (reverse)

seq1  GCTCACAG-CCATGTC--ACCTGCTCT--GGTTCCCCCTCG-CAGC-TTC  43
      |||||||| |||||||   | |||| |  | |||||||||| |||| |||
seq2  GCTCACAGCCCATGTCCGCCTTGCTTTTGGTTTCCCCCTCGCCAGCTTTC  50

seq1  CGCAGCCCTTGGAGAGAAGTG-CTTATAG-CCTCTTTCTTAAA-CATA-G  89
      |||||||| |||||||||||| ||||||| ||||||||||||| |||| |
seq2  CGCAGCCC-TGGAGAGAAGTGCCTTATAGCCCTCTTTCTTAAACCATAGG  99

seq1  TGATCTATGATC-TGTGGACACTAT-CCCCAGTGG-CCACCCCAAGCTCA  136
      |||||||||||| |||||||||||| ||||||||| ||||||||||||||
seq2  TGATCTATGATCATGTGGACACTATCCCCCAGTGGCCCACCCCAAGCTCA  149

seq1  CAC-AAGGCCATCTCCCCTCTTCCGACTAAGCCTGCTTTGCTCCTTTGCA  185
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  CACAAAGGCCATCTCCCCTCTTCCGACTAAGCATGCTTTGCTCCTTTGCA  199

seq1  AAGCTCTGAAGGATGGCCACTTACAATCGGAGTCTCCTCTTTTCCTTTCT  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGAAGGATGGCCACTTACAATCGGAGTCTCCTCTTTTCCTTTCT  249

seq1  CACAAGGAAGGATCAGTATAGCTCTGCACAGCTGACTGCTTGCTCAAATG  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGAAGGATCAGTATAGCTCTGCACAGCTGACTGCTTGCTCAAATG  299

seq1  CTCTCAGCAGTTCCTGGAAGTCAGTTCATCTTGCCACCTCATCCTCCAGT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGCAGTTCCTGGAAGTCAGTTCATCTTGCCACCTCATCCTCCAGT  349

seq1  CAGGCTCCCCCCATCCTGAACACCCCACTTCTGCCTGTACCTCTTGCCAC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCCCCCATCCTGAACACCCCACTTCTGCCTGTACCTCTTGCCAC  399

seq1  CCCTAACCGCCACGCCCTCCCGTCTGTATTCCCATGGTGCCTTGAGCCAA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAACCGCCACGCCCTCCCGTCTGTATTCCCATGGTGCCTTGAGCCAA  449

seq1  CTCCCTCTTGGTCTTGGTTTCACCAGTTATTTGTCCTCCAGGGACTCCTC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTTGGTCTTGGTTTCACCAGTTATTTGTCCTCCAGGGACTCCTC  499

seq1  CTCCAGGAAGGCAGCTTGATTCTTTTGCTGAGATGTGGTCTACCTACTAA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGAAGGCAGCTTGATTCTTTTGCTGAGATGTGGTCTACCTACTAA  549

seq1  GGACCACCCCCTAGCTGCCCCGGTTGCCCTGCTTTCTTCCCAGTGGATGG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACCCCCTAGCTGCCCCGGTTGCCCTGCTTTCTTCCCAGTGGATGG  599

seq1  CCCTGGACAACAGGTCTCCTCTCTCCACCCTTTTCATGATGGTGACTCAG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGACAACAGGTCTCCTCTCTCCACCCTTTTCATGATGGTGACTCAG  649

seq1  CACTGTCTCTCCCCGCTGTTGCTGCTCCTTCCTGGGCTCTAATGTGTCAC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCTCTCCCCGCTGTTGCTGCTCCTTCCTGGGCTCTAATGTGTCAC  699

seq1  TTGCCAAGCTCCAAAGATGGAGGGAATCGGTCACTGGATTTTCACATCAG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAGCTCCAAAGATGGAGGGAATCGGTCACTGGATTTTCACATCAG  749

seq1  CGAGAAGCCTGTTACTCTGCCTCCGTGGCCAACCAGTTCTTCCAAGGAGG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAGCCTGTTACTCTGCCTCCGTGGCCAACCAGTTCTTCCAAGGAGG  799

seq1  ATGGCCACCATTAGGGAAGCCTAGAAGCCCTGACTTATATCCTCCAACCC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCACCATTAGGGAAGCCTAGAAGCCCTGACTTATATCCTCCAACCC  849

seq1  CACACTGCAGGGGCTGCTGGGAAGCACAGGCAGACAGTGCAGCATGCTGG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGCAGGGGCTGCTGGGAAGCACAGGCAGACAGTGCAGCATGCTGG  899

seq1  GTCCTAGATGCAAGCAGAGAGGGCCCGCAGCCAGGCTGACCACAGAGAAC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGATGCAAGCAGAGAGGGCCCGCAGCCAGGCTGACCACAGAGAAC  949

seq1  CTAGAAGCTGGCCTTAAATAAACCTTTGCAGCCTTTCACTAGAATTC  982
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGCTGGCCTTAAATAAACCTTTGCAGCCTTTCACTAGAATTC  996