BAC Information

Click to search

BAC

Clone NameB6Ng01-316B19
Chromosome13 (Build37)
Map Location 64,202,173 - 64,366,496
singlet/doubletdoublet
Overlap geneSlc35d2, Zfp367, Habp4, Cdc14b
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3
Downstream gene1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316B19.bB6Ng01-316B19.g
ACCGA106589GA106590
length1,1731,092
definitionB6Ng01-316B19.b B6Ng01-316B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,202,173 - 64,203,349)(64,365,404 - 64,366,496)
sequence
gaattccatacgtggtatcttagggttactatttctgtgatgaaacagca
caaccaaagaaacttagggagggaaggacgactcagcttaggcctccacg
gcactcacctgttcatcatggaggaagtcaggacagggcaagaacctaga
gacagaagccatggaggcatactgcttactggcttgctccccatggcttg
ctcagcctgctttcttatagaacaacaggccagggatggccccacctgca
ataggcttggccttcccacatcaaccactaattaagaagatgtcccatag
ccagatcttatggaagcattttctcagttgaggttccctccattcagata
actttagcttgtatcgagttgacataaaactatcccccacacatgggaaa
tctcatcacttggtttctgtttgtatttatttatttatatatttttgagt
tccatgcaacacatgccagcacatagttgagtgcagtacccacctttaga
caataaaaaccaatttacacatctgctactgaatgtaatggtactgtggc
agtcagtcttgtccacatgactaaacttaggatcaccatggaaaaattct
actgggcatagctgggagggagtttccagaaaagtttaactgaagaggga
agacccacccaaacagaagcagcacaatcccaccgccttccatcccagac
ggaatgaaaaagcaacagtaagctgggtatcagcattcacctctctctgc
ttcactgcggatacaaagtgtcagctgcctctctcctgccaccttccctg
ccaaacggactgcactctcagtgagccaaagtgaatcctgaagttgcttt
gtcacagtgagggaaaaaagcaactaacataaaggttaccacgcatgttt
catctttggattccaggctcatgcccacagtcacaggtaaggtcactgaa
accagaacctcctcctcggaggtatagcctttcatgtttctcccacttct
gacctggagctggccataaactctctgactgatctcgtcttgtaaatgac
catagaggcctgtttctgaaagcaggatccacgacttgagaaaggtacgc
tacagaggagaagagaccaggagcgtctgaacgaagcctttccagacttc
catcctgtcatcagcatgagaac
gaattcagtgccctcttggcttcgtttagaacctgtacacatttgatatg
cacacatagacacacaattaaaaagtagaaataaatcttaaaagctggtt
ttaaccttcccaaagtagaatatatatattctaaagattttaaacttaca
tttatttagtgtgtatgtttgtgtgtgagaaagaaagagagactctgtgt
gtgtctgtgtgaacaagcatagatgctggcgaattggttttcttatttca
caatgtgtgtcccagctatcgaactcagttttttgggcttggtggcaagt
ttctacaagttatgccatcttgctggcccttaaagtcaaggctcttgacg
tgtgatacgtacaactcatttgggccctgttttgtagaggttttatgccc
cgcccccttttaaagcaacttttcatgaatattgctccatcaaaggtagt
caggtccttgactcctttatggttctttctgatacttgtaaatagtaaaa
tctaatctgtgagttgtgagtctcggttgtgtctatttctgcttgtcctt
ggtttggtttgaggtgacagcagctctgactatagatcaccttcttcaca
actgaagctgaaactgcccttcctgtgaaaagaggagttgatctctgtat
atgcgtaataccaaatgtgatttccgggtatttttttgttatgaatgtta
aatgatgaatgcttttggtagtaccaaatttgtcttttaaaattgaagta
ccttttaaaatggtgctttctgaaataatatttacaattaactgatgtaa
gagttattctttttggtttgtttgttttgagagagggtctttaaaataat
agtttctttctgtttgggcatttctgtgcctacctggcaggtttatgtaa
tttttttaattctgtgaagcacaagggaaatttcatgaaatgctagtttc
aattgggtctctgggaaggcttttatgttctgtttttggattcagacagg
aaatcagctgtgtgctaggatgggaccaggagggctcttgtatgattgtc
aagctctcttcgcaaactacagtcctagtccacgtttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64202173_64203349
seq2: B6Ng01-316B19.b_50_1222

seq1  GAATTCCATACGTGGTATCTTAGGGTTACTATTTCTGTGATGAAACAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACGTGGTATCTTAGGGTTACTATTTCTGTGATGAAACAGCA  50

seq1  CAACCAAAGAAACTTAGGGAGGGAAGGACGACTCAGCTTAGGCCTCCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAAAGAAACTTAGGGAGGGAAGGACGACTCAGCTTAGGCCTCCACG  100

seq1  GCACTCACCTGTTCATCATGGAGGAAGTCAGGACAGGGCAAGAACCTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCACCTGTTCATCATGGAGGAAGTCAGGACAGGGCAAGAACCTAGA  150

seq1  GACAGAAGCCATGGAGGCATACTGCTTACTGGCTTGCTCCCCATGGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGCCATGGAGGCATACTGCTTACTGGCTTGCTCCCCATGGCTTG  200

seq1  CTCAGCCTGCTTTCTTATAGAACAACAGGCCAGGGATGGCCCCACCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCTGCTTTCTTATAGAACAACAGGCCAGGGATGGCCCCACCTGCA  250

seq1  ATAGGCTTGGCCTTCCCACATCAACCACTAATTAAGAAGATGTCCCATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTTGGCCTTCCCACATCAACCACTAATTAAGAAGATGTCCCATAG  300

seq1  CCAGATCTTATGGAAGCATTTTCTCAGTTGAGGTTCCCTCCATTCAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTTATGGAAGCATTTTCTCAGTTGAGGTTCCCTCCATTCAGATA  350

seq1  ACTTTAGCTTGTATCGAGTTGACATAAAACTATCCCCCACACATGGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGCTTGTATCGAGTTGACATAAAACTATCCCCCACACATGGGAAA  400

seq1  TCTCATCACTTGGTTTCTGTTTGTATTTATTTATTTATATATTTTTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCACTTGGTTTCTGTTTGTATTTATTTATTTATATATTTTTGAGT  450

seq1  TCCATGCAACACATGCCAGCACATAGTTGAGTGCAGTACCCACCTTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCAACACATGCCAGCACATAGTTGAGTGCAGTACCCACCTTTAGA  500

seq1  CAATAAAAACCAATTTACACATCTGCTACTGAATGTAATGGTACTGTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAACCAATTTACACATCTGCTACTGAATGTAATGGTACTGTGGC  550

seq1  AGTCAGTCTTGTCCACATGACTAAACTTAGGATCACCATGGAAAAATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTCTTGTCCACATGACTAAACTTAGGATCACCATGGAAAAATTCT  600

seq1  ACTGGGCATAGCTGGGAGGGAGTTTCCAGAAAAGTTTAACTGAAGAGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCATAGCTGGGAGGGAGTTTCCAGAAAAGTTTAACTGAAGAGGGA  650

seq1  AGACCCACCCAAACAGAAGCAGCACAATCCCACCGCCTTCCATCCCAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCACCCAAACAGAAGCAGCACAATCCCACCGCCTTCCATCCCAGAC  700

seq1  GGAATGAAAAAGCAACAGTAAGCTGGGTATCAGCATTCACCTCTCTCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAAAAAGCAACAGTAAGCTGGGTATCAGCATTCACCTCTCTCTGC  750

seq1  TTCACTGCGGATACAAAGTGTCAGCTGCCTCTCTCCTGCCACCTTCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGCGGATACAAAGTGTCAGCTGCCTCTCTCCTGCCACCTTCCCTG  800

seq1  CCAAACGGACTGCACTCTCAGTGAGCCAAAGTGAATCCTGAAGTTGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACGGACTGCACTCTCAGTGAGCCAAAGTGAATCCTGAAGTTGCTTT  850

seq1  GTCACAGTGAGGGAAAAAAGCAACTAACAT-AAGGTTACCACGCATGTTT  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTCACAGTGAGGGAAAAAAGCAACTAACATAAAGGTTACCACGCATGTTT  900

seq1  CATC-TTGGATTCCAGGCTCATGCCCACAGTCACAGGT-AGGTCACTGAA  947
      |||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  CATCTTTGGATTCCAGGCTCATGCCCACAGTCACAGGTAAGGTCACTGAA  950

seq1  ACCAGAACCTCCTCCTCGGAGGTATAGCCTTTCATGTTTCTCCCACTTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAACCTCCTCCTCGGAGGTATAGCCTTTCATGTTTCTCCCACTTCT  1000

seq1  GACCTGGAGCTGGCCATAAACTCTCTGACTGATCTCGTCTTGTAAATGAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGAGCTGGCCATAAACTCTCTGACTGATCTCGTCTTGTAAATGAC  1050

seq1  CATAAGAGCCCTGTTTCTGAAAGGCAGGATCCAACGACTTGAGGAAAGTA  1097
      ||| |||| ||||||||||||| ||||||||| |||||||||| || |||
seq2  CAT-AGAGGCCTGTTTCTGAAA-GCAGGATCC-ACGACTTGAGAAAGGTA  1097

seq1  CGCTACAGA-GAG-AGAGACCAGGAAGCGTCTGAACAGAAAGGCTTTCCA  1145
      ||||||||| ||| |||||||||| |||||||||||   ||| |||||||
seq2  CGCTACAGAGGAGAAGAGACCAGG-AGCGTCTGAAC--GAAGCCTTTCCA  1144

seq1  GACTTCCCCATCCTGTCCATCAGCATGAGAAC  1177
      |||||  ||||||||| |||||||||||||||
seq2  GACTT--CCATCCTGT-CATCAGCATGAGAAC  1173

seq1: chr13_64365404_64366496
seq2: B6Ng01-316B19.g_66_1157 (reverse)

seq1  -AAAAAAAAGT-GACTAAGACTGTAGTTTTGCG-AGAGAGCTTGACAATC  47
       ||||||| || ||||| |||||||| |||||| ||||||||||||||||
seq2  AAAAAAAACGTGGACTAGGACTGTAG-TTTGCGAAGAGAGCTTGACAATC  49

seq1  ATACAAGAGGCCCTCCTGGGTCCCATCCCTAGCACACAGCTTGATTTCCT  97
      |||||||| |||||||| |||||||| ||||||||||||| |||||||||
seq2  ATACAAGA-GCCCTCCT-GGTCCCAT-CCTAGCACACAGC-TGATTTCCT  95

seq1  GTCTGAATCC-AAAACAGAACATAAAAGCCCTTCCCAGAGACCCAATTGA  146
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  GTCTGAATCCAAAAACAGAACATAAAAG-CCTTCCCAGAGACCCAATTGA  144

seq1  AACTAGCATTTCATGAAATTTCCCTTGTGCTTCACAGAATT-AAAAAATT  195
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AACTAGCATTTCATGAAATTTCCCTTGTGCTTCACAGAATTAAAAAAATT  194

seq1  ACATAAACCTGCCAGGTAGGCACAGAAATGCCCAAACAGAAAGAAACTAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACCTGCCAGGTAGGCACAGAAATGCCCAAACAGAAAGAAACTAT  244

seq1  TATTTTAAAGACCCTCTCTCAAAACAAACAAACCAAAAAGAATAACTCTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAAGACCCTCTCTCAAAACAAACAAACCAAAAAGAATAACTCTT  294

seq1  ACATCAGTTAATTGTAAATATTATTTCAGAAAGCACCATTTTAAAAGGTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTTAATTGTAAATATTATTTCAGAAAGCACCATTTTAAAAGGTA  344

seq1  CTTCAATTTTAAAAGACAAATTTGGTACTACCAAAAGCATTCATCATTTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATTTTAAAAGACAAATTTGGTACTACCAAAAGCATTCATCATTTA  394

seq1  ACATTCATAACAAAAAAATACCCGGAAATCACATTTGGTATTACGCATAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATAACAAAAAAATACCCGGAAATCACATTTGGTATTACGCATAT  444

seq1  ACAGAGATCAACTCCTCTTTTCACAGGAAGGGCAGTTTCAGCTTCAGTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATCAACTCCTCTTTTCACAGGAAGGGCAGTTTCAGCTTCAGTTG  494

seq1  TGAAGAAGGTGATCTATAGTCAGAGCTGCTGTCACCTCAAACCAAACCAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGGTGATCTATAGTCAGAGCTGCTGTCACCTCAAACCAAACCAA  544

seq1  GGACAAGCAGAAATAGACACAACCGAGACTCACAACTCACAGATTAGATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGCAGAAATAGACACAACCGAGACTCACAACTCACAGATTAGATT  594

seq1  TTACTATTTACAAGTATCAGAAAGAACCATAAAGGAGTCAAGGACCTGAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTTACAAGTATCAGAAAGAACCATAAAGGAGTCAAGGACCTGAC  644

seq1  TACCTTTGATGGAGCAATATTCATGAAAAGTTGCTTTAAAAGGGGGCGGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTGATGGAGCAATATTCATGAAAAGTTGCTTTAAAAGGGGGCGGG  694

seq1  GCATAAAACCTCTACAAAACAGGGCCCAAATGAGTTGTACGTATCACACG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAACCTCTACAAAACAGGGCCCAAATGAGTTGTACGTATCACACG  744

seq1  TCAAGAGCCTTGACTTTAAGGGCCAGCAAGATGGCATAACTTGTAGAAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGCCTTGACTTTAAGGGCCAGCAAGATGGCATAACTTGTAGAAAC  794

seq1  TTGCCACCAAGCCCAAAAAACTGAGTTCGATAGCTGGGACACACATTGTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACCAAGCCCAAAAAACTGAGTTCGATAGCTGGGACACACATTGTG  844

seq1  AAATAAGAAAACCAATTCGCCAGCATCTATGCTTGTTCACACAGACACAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAAAACCAATTCGCCAGCATCTATGCTTGTTCACACAGACACAC  894

seq1  ACAGAGTCTCTCTTTCTTTCTCACACACAAACATACACACTAAATAAATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTCTCTCTTTCTTTCTCACACACAAACATACACACTAAATAAATG  944

seq1  TAAGTTTAAAATCTTTAGAATATATATATTCTACTTTGGGAAGGTTAAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTAAAATCTTTAGAATATATATATTCTACTTTGGGAAGGTTAAAA  994

seq1  CCAGCTTTTAAGATTTATTTCTACTTTTTAATTGTGTGTCTATGTGTGCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTTAAGATTTATTTCTACTTTTTAATTGTGTGTCTATGTGTGCA  1044

seq1  TATCAAATGTGTACAGGTTCTAAACGAAGCCAAGAGGGCACTGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATGTGTACAGGTTCTAAACGAAGCCAAGAGGGCACTGAATTC  1092