BAC Information

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BAC

Clone NameB6Ng01-316I02
Chromosome13 (Build37)
Map Location 48,678,359 - 48,850,141
singlet/doubletdoublet
Overlap geneAW456874, Barx1
Upstream gene4931429P17Rik, Id4, LOC667351, Zfp169, A830005F24Rik
Downstream genePhf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316I02.bB6Ng01-316I02.g
ACCGA106885GA106886
length796739
definitionB6Ng01-316I02.b B6Ng01-316I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,849,597 - 48,850,141)(48,678,359 - 48,679,095)
sequence
gaattctttagtggaatgaatttcaagaaagcagaatgttgagtctgtgg
cacggttgctaccgattactcttatactggtttacaattttaaaaggcaa
taaagagggggggaggaaacataattttttaaaaatgcagttcggagaag
aaaagagcactaggcagtttagtgtggctgccaagacacgagccaaaaga
ggctgtaattgtggatgggccacatccaaacagtcgaagggcttacgggt
acaacagagtgacatttcccaagtaaaggaaaacatcctgcctgacacct
ttggctgggatgccaactcttctcctgtccttggactcaaccagaaacac
aagctccctcaaggttgcaagcctgccagtcttggtataagaactgggtt
tttggcctttggactcagcctggaaccaaaccatgggcttcactggctct
aagtatgttggcttacaataaagatctggggtctgtctggcttatataac
ttcatagccacacgagcctccccctcccatctctaccttttttcacaagg
aaagtgtggatcgctgtatacacgtgtatgtgcggttcaaatggatgttg
gcttggtttctctgaattactcttactaagacagattgtggggttgagaa
aatgtgttgggcttttgttgctgtgacgaagtgtctgccacacagctcag
gggaggattctctggttggttttgctcactggctcacaggtaaggcagag
caaattagttcatgtcatgaggatggtggtgatgatgatggtggtg
gaattcattcttttagtaatggattttttgcacatgtctgaagcttatag
tgaggccttaattatcttcattagccggtccaattgctactttaccttct
ctagtaaaaacagggcttcggcagcatctgcttgtctgtcgaccagcatg
tccacatcctctttggtgattacaggctctttcagttgctcaacccaaga
ccacatcaaactgcacaagatgaaagggtctctctcgccgcatattcgtt
cccaggcttcctcccgggaatttagttctttctacaaaggaagagggaga
gagggagagatctggggggaaaagaggtgtatggacccgaactagaggat
tcataagcacttacagagttgaggctggcctctgaggtgcaacctggacc
ttccccggggcctgcacctctaggtatgggcacttggctaacacaggagc
ttccccaagcccaggctcattcctgtcacaaacagggttagctaactact
gagagaagagtcactacactgtgtggccctgactgattcagagaccatag
aagtagctcaaaatggagtctttttttctccggcatctggtaaacaaaac
agaaatttgacagcaaatgaagtaaaatggtagattaaaaataagagacc
acttataagttaatctgggatcttagctaactaaacctttttaacccgaa
acgtcaaagtttgtgtgtgtgtgtgtgtgtgtatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_48849597_48850141
seq2: B6Ng01-316I02.b_294_838 (reverse)

seq1  CACCACCATCATCATCACCACCATCCTCATGACATGAACTAATTTGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCATCATCATCACCACCATCCTCATGACATGAACTAATTTGCTCT  50

seq1  GCCTTACCTGTGAGCCAGTGAGCAAAACCAACCAGAGAATCCTCCCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACCTGTGAGCCAGTGAGCAAAACCAACCAGAGAATCCTCCCCTGA  100

seq1  GCTGTGTGGCAGACACTTCGTCACAGCAACAAAAGCCCAACACATTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGGCAGACACTTCGTCACAGCAACAAAAGCCCAACACATTTTCT  150

seq1  CAACCCCACAATCTGTCTTAGTAAGAGTAATTCAGAGAAACCAAGCCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCACAATCTGTCTTAGTAAGAGTAATTCAGAGAAACCAAGCCAAC  200

seq1  ATCCATTTGAACCGCACATACACGTGTATACAGCGATCCACACTTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTGAACCGCACATACACGTGTATACAGCGATCCACACTTTCCTT  250

seq1  GTGAAAAAAGGTAGAGATGGGAGGGGGAGGCTCGTGTGGCTATGAAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAAAGGTAGAGATGGGAGGGGGAGGCTCGTGTGGCTATGAAGTTA  300

seq1  TATAAGCCAGACAGACCCCAGATCTTTATTGTAAGCCAACATACTTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCCAGACAGACCCCAGATCTTTATTGTAAGCCAACATACTTAGAG  350

seq1  CCAGTGAAGCCCATGGTTTGGTTCCAGGCTGAGTCCAAAGGCCAAAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAAGCCCATGGTTTGGTTCCAGGCTGAGTCCAAAGGCCAAAAACC  400

seq1  CAGTTCTTATACCAAGACTGGCAGGCTTGCAACCTTGAGGGAGCTTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTATACCAAGACTGGCAGGCTTGCAACCTTGAGGGAGCTTGTGT  450

seq1  TTCTGGTTGAGTCCAAGGACAGGAGAAGAGTTGGCATCCCAGCCAAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTGAGTCCAAGGACAGGAGAAGAGTTGGCATCCCAGCCAAAGGT  500

seq1  GTCAGGCAGGATGTTTTCCTTTACTTGGGAAATGTCACTCTGTTG  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCAGGATGTTTTCCTTTACTTGGGAAATGTCACTCTGTTG  545

seq1: chr13_48678359_48679095
seq2: B6Ng01-316I02.g_66_804

seq1  GAATTCATTCTTTTAGTAATGGATTTTTTGCACATGTCTGAAGCTTATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTTTAGTAATGGATTTTTTGCACATGTCTGAAGCTTATAG  50

seq1  TGAGGCCTTAATTATCTTCATTAGCCGGTCCAATTGCTACTTTACCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCTTAATTATCTTCATTAGCCGGTCCAATTGCTACTTTACCTTCT  100

seq1  CTAGTAAAAACAGGGCTTCGGCAGCATCTGCTTGTCTGTCGACCAGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAAAACAGGGCTTCGGCAGCATCTGCTTGTCTGTCGACCAGCATG  150

seq1  TCCACATCCTCTTTGGTGATTACAGGCTCTTTCAGTTGCTCAACCCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCTCTTTGGTGATTACAGGCTCTTTCAGTTGCTCAACCCAAGA  200

seq1  CCACATCAAACTGCACAAGATGAAAGGGTCTCTCTCGCCGCATATTCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCAAACTGCACAAGATGAAAGGGTCTCTCTCGCCGCATATTCGTT  250

seq1  CCCAGGCTTCCTCCCGGGAATTTAGTTCTTTCTACAAAGGAAGAGGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTTCCTCCCGGGAATTTAGTTCTTTCTACAAAGGAAGAGGGAGA  300

seq1  GAGGGAGAGATCTGGGGGGAAAAGAGGTGTATGGACCCGAACTAGAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGAGATCTGGGGGGAAAAGAGGTGTATGGACCCGAACTAGAGGAT  350

seq1  TCATAAGCACTTACAGAGTTGAGGCTGGCCTCTGAGGTGCAACCTGGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGCACTTACAGAGTTGAGGCTGGCCTCTGAGGTGCAACCTGGACC  400

seq1  TTCCCCGGGGCCTGCACCTCTAGGTATGGGCACTTGGCTAACACAGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCGGGGCCTGCACCTCTAGGTATGGGCACTTGGCTAACACAGGAGC  450

seq1  TTCCCCAAGCCCAGGCTCATTCCTGTCACAAACAGGGTTAGCTAACTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAAGCCCAGGCTCATTCCTGTCACAAACAGGGTTAGCTAACTACT  500

seq1  GAGAGAAGAGTCACTACACTGTGTGGCCCTGACTGATTCAGAGACCATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGAGTCACTACACTGTGTGGCCCTGACTGATTCAGAGACCATAG  550

seq1  AAGTAGCTCAAAATGGAGTCTTTTTTTCTCCGGCATCTGGTAAACAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTCAAAATGGAGTCTTTTTTTCTCCGGCATCTGGTAAACAAAAC  600

seq1  AGAAATTTGACAGCAAATGAAGTAAAATGGTAGATTAAAAATAAGAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTGACAGCAAATGAAGTAAAATGGTAGATTAAAAATAAGAGACC  650

seq1  ACTTATAAGTTAATCTGGGATCTTAGCTAACTAAACCTTTT--AACCGAA  698
      |||||||||||||||||||||||||||||||||||||||||  | |||||
seq2  ACTTATAAGTTAATCTGGGATCTTAGCTAACTAAACCTTTTTAACCCGAA  700

seq1  ACGTCAAAGTTTGTGTGTGTGTGTGTGTGTGTATGTGTG  737
      |||||||||||||||||||||||||||||||||||||||
seq2  ACGTCAAAGTTTGTGTGTGTGTGTGTGTGTGTATGTGTG  739