BAC Information

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BAC

Clone NameB6Ng01-316I06
Chromosome13 (Build37)
Map Location 116,660,480 - 116,661,568
singlet/doubletsinglet
Overlap genenone
Upstream geneItga2, LOC100040975, Itga1, Pelo, LOC100041023, LOC547402, LOC100041045
Downstream geneEG623174, Isl1, EG668276, Gm280, LOC100041169, Parp8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316I06.b
ACCGA106893
length1,088
definitionB6Ng01-316I06.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaaatgcagtaacaacacccagaatgtaacacatgatttattta
acaacacagtgcatgaagtataaaattgagttagaagtaaaaataggaaa
acagtaactatcaagagaagtctctctctctctctctctctctctctttc
tctctctccctagtcaatggaaacaggttgagatgtctgaaggagtttgt
gagtggttgtcactgaagtgaaaggtcaggtacaaagtgataaaagcttt
ttgaaatatacacaagaatttccaatagtgcaactcaaaatgccatccat
tgtccgacataaataatgtgagtagctttagaaattctggtcaacatcat
ggctctgaaccacaaattgtgaacaatcgtgacaagcattgctcatgggt
aacgttatgaaagcctaaaagaaaatgaggaatgtgtaggaagggtggtt
ttgatagaaaaataaaaccatgaatataatatatttgtggaataggtgaa
ttggtaacaatttcaattaaaagaaaacctaattactcttgagcagaaag
aggcacagtttagttaactaacttatccttcgaaaaaagtcacagttaac
tcaagcagttaaatattataaaactttagcaaaatacaataaaatataat
ataaaactattacaatgaaattggacaagaaaaactaaatgaaggaaaag
agcacaagacaaggcacaagaatcatagacctacccactcatttgcacac
tcaggcatgccctaaaaacagtaaactggaagtcataatacctacataga
aactatggtgctgatccaagcaggccctgtgcatgctgcttcaagtctct
ttgagttcataggcgctttgcttatgttgacttagaaaacctgttttctt
gatgtcctccattctctctggctcttataactctttctgcctcctcttta
ttaagtaaactgattcatgatgggaaatatttgaagagactctcacttag
ttcagaagaccacggtctcttaatttcttgtataagtcttgctgtgggaa
ctccatatttctccattctgtgcggaaggaagcatctc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_116660480_116661568
seq2: B6Ng01-316I06.b_46_1133

seq1  GAATTCTAAATGCAGTAACAACACCCAGAATGTAACACATGATTTATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATGCAGTAACAACACCCAGAATGTAACACATGATTTATTTA  50

seq1  ACAACACAGTGCATGAAGTATAAAATTGAGTTAGAAGTAAAAATAGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACAGTGCATGAAGTATAAAATTGAGTTAGAAGTAAAAATAGGAAA  100

seq1  ACAGTAACTATCAAGAGAAGTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAACTATCAAGAGAAGTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC  150

seq1  TCTCTCTCCCTAGTCAATGGAAACAGGTTGAGATGTCTGAAGGAGTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCTAGTCAATGGAAACAGGTTGAGATGTCTGAAGGAGTTTGT  200

seq1  GAGTGGTTGTCACTGAAGTGAAAGGTCAGGTACAAAGTGATAAAAGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTTGTCACTGAAGTGAAAGGTCAGGTACAAAGTGATAAAAGCTTT  250

seq1  TTGAAATATACACAAGAATTTCCAATAGTGCAACTCAAAATGCCATCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATATACACAAGAATTTCCAATAGTGCAACTCAAAATGCCATCCAT  300

seq1  TGTCCGACATAAATAATGTGAGTAGCTTTAGAAATTCTGGTCAACATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGACATAAATAATGTGAGTAGCTTTAGAAATTCTGGTCAACATCAT  350

seq1  GGCTCTGAACCACAAATTGTGAACAATCGTGACAAGCATTGCTCATGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGAACCACAAATTGTGAACAATCGTGACAAGCATTGCTCATGGGT  400

seq1  AACGTTATGAAAGCCTAAAAGAAAATGAGGAATGTGTAGGAAGGGTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTATGAAAGCCTAAAAGAAAATGAGGAATGTGTAGGAAGGGTGGTT  450

seq1  TTGATAGAAAAATAAAACCATGAATATAATATATTTGTGGAATAGGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGAAAAATAAAACCATGAATATAATATATTTGTGGAATAGGTGAA  500

seq1  TTGGTAACAATTTCAATTAAAAGAAAACCTAATTACTCTTGAGCAGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAACAATTTCAATTAAAAGAAAACCTAATTACTCTTGAGCAGAAAG  550

seq1  AGGCACAGTTTAGTTAACTAACTTATCCTTCGAAAAAAGTCACAGTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGTTTAGTTAACTAACTTATCCTTCGAAAAAAGTCACAGTTAAC  600

seq1  TCAAGCAGTTAAATATTATAAAACTTTAGCAAAATACAATAAAATATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAGTTAAATATTATAAAACTTTAGCAAAATACAATAAAATATAAT  650

seq1  ATAAAACTATTACAATGAAATTGGACAAGAAAAACTAAATGAAGGAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTATTACAATGAAATTGGACAAGAAAAACTAAATGAAGGAAAAG  700

seq1  AGCACAAGACAAGGCACAAGAATCATAGACCTACCCACTCATTTGCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAGACAAGGCACAAGAATCATAGACCTACCCACTCATTTGCACAC  750

seq1  TCAGGCATGCCCTAAAAACAGTAAACTGGAAGTCATAATACCTACATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCATGCCCTAAAAACAGTAAACTGGAAGTCATAATACCTACATAGA  800

seq1  AACTATGGTGCTGATCCAAGCAGGCCCTGTGCATGCTGCTTC-AGTCTCT  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACTATGGTGCTGATCCAAGCAGGCCCTGTGCATGCTGCTTCAAGTCTCT  850

seq1  TTGAGTTCATAGGCGCTTTGCTTATGTTGACTTAGAGAACCTGTTTTCTT  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTGAGTTCATAGGCGCTTTGCTTATGTTGACTTAGAAAACCTGTTTTCTT  900

seq1  GATGTCCTCCATTCTCTCTGGCTCTTAT-ACTCTTTCTGCCTCCTCTTTA  948
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GATGTCCTCCATTCTCTCTGGCTCTTATAACTCTTTCTGCCTCCTCTTTA  950

seq1  TTAAGGTAAACTGATTCATGATGGGAAATATTTGAGGAAGACATCTCACT  998
      |||| |||||||||||||||||||||||||||||| | |||| |||||||
seq2  TTAA-GTAAACTGATTCATGATGGGAAATATTTGAAG-AGAC-TCTCACT  997

seq1  TAGTTCAG-AGACCACGGTCTCTTATTTTC-TGTATAAGGTCTTGCTGTG  1046
      |||||||| |||||||||||||||| |||| ||||||| |||||||||||
seq2  TAGTTCAGAAGACCACGGTCTCTTAATTTCTTGTATAA-GTCTTGCTGTG  1046

seq1  GG-ACTCCATATTTCTTCCCATCTGGTGCGGAAGGAAGCATCTC  1089
      || |||||||||||||  ||||   |||||||||||||||||||
seq2  GGAACTCCATATTTCT--CCATTCTGTGCGGAAGGAAGCATCTC  1088


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