BAC Information

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BAC

Clone NameB6Ng01-316O12
Chromosome13 (Build37)
Map Location 29,193,244 - 29,302,927
singlet/doubletdoublet
Overlap geneLOC100041135
Upstream genePrl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4
Downstream geneCdkal1, E2f3, Mboat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316O12.bB6Ng01-316O12.g
ACCGA107185GA107186
length1,1041,097
definitionB6Ng01-316O12.b B6Ng01-316O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,193,244 - 29,194,349)(29,301,834 - 29,302,927)
sequence
gaattccacagaacctctgtaggaatgaactgttaaggcacaacttgcac
ctaatttacagacttcctgtataattggaagtcacccatagtcatttccc
ttgtaagaatctgaagcagatcttactgactgaaccaaaaagcagttaag
cccaactaatgatctgtttggggcttaccccacttcaaagcccagatctg
caaagacagtcagggacctttccctagcctagtcttcttggtccttcatt
gtctattggattgtctctaccaagagaatttgatagctctcagaaacctt
tatattctcagaaccccacagagctcttcttcacctagtaggtacccaag
agtctctgttggatgacagcatagttaatttgcctattacttgaactcaa
aaataatcccaacctaagggtacaagaattctcaaacacccgtcttgcgt
ttagtaaaggagaaagagaatagatagagtttagtaaagaaacatcaatc
acaaatgttattctttagaactggaggcactgaaagacagttgttatgtg
atctcacttgtatttggatgctacaaaagttggcttcatggaagtgagcc
ctaaaatagtgtttcgcagaggctgggaaggatgtgaaggacagcactat
gctttgggtctgaattttacctctaaagctcatgcgttgaaggcttggtc
tcagtgcagcagtgtgcagagttgagggtcttagaaaatgacaagataat
gagggttctaatgtcactgatgggttaagtgactgaagaagccatggctg
catgggctatggggatatggtaggatctttgcagggtggggctttactgg
aggatatgggatactgaggaagggatgatggctctgaagaatctgtttgg
tcttagcatcctgacctcaaccccaacctggccaccagagtaagctaaac
agatggtccccaccacagctcactcctgtgtgccttcctgccatgagtct
aaactcacttgagtcagtgacaacagtctcaattctctgacccctgagcc
caaataaacctcaatttttttatcccacagttttccaattatttacagaa
agct

gaattctttcagcttgcacgcgtcttgacatttcttcttcattgaccttc
agctgctcccaagttacctgtccaggcagctgcctgggaaaggggcggag
cctctgtgctcggagcttggggttatcaggttacagcggtccttctcggg
aacaaagcaaactgaagaggaatgacttgacaaagaacgtttctgtcttt
ggagcaatgtcttcgacttctgtttcctgctaatgttttaaatgtgcgcg
ggggcggggggagttggggtcagggcccacatgagctctcgccggcacaa
aaggaaacatcacgctgaggagaaatggtggggcttatcaaagcgagctt
gtgctgtggtgtcttttagaggaaaaagaaccttctccttacctgctgag
cgccctcctattaccgcctctggttcactgtgctgctcacaggttagcca
ggaaggcggagggagggctgggccacacacactagagctgcttaattgtt
aacgcttctcaggagagttggcgattatttcaaatggcaggaatttcttt
ttaccgcggctgggaagatgaaaaacacgacatcagaagcgcaacaacac
tcggatcatttttgaagtgcatctatttttgttttctgtttgagacgaaa
atgcttctggcaaagtcaaattctataatggtagctatcttaagtcacga
ggtcctaaaggacacaagcctgggtctccgtgcagcaagaagaaaacaag
aacagaaagggtcacactacgaggtctccctgggaccacctagataaggc
ttaactttcttcacacagggaaaaaagaaaatctgccaccaccctgggtt
attttattgggacccagtgtcccaaatagtcagctttgcagtgtagacaa
tgtttgcccaagtttctgcatctgcttaattattatgctcttcgaattct
ttgcccaagcagcaaaaacaactagctgagtagcctcctgccttctgttg
ccagcacttcaggctgaggcagaggttgcttccaattcaagcatcctagg
ccaccatagaaagttccaggataccctggcctgggagtgagaacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29193244_29194349
seq2: B6Ng01-316O12.b_51_1154

seq1  GAATTCCACAGAACCTCTGTAGGAATGAACTGTTAAGGCACAACTTGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGAACCTCTGTAGGAATGAACTGTTAAGGCACAACTTGCAC  50

seq1  CTAATTTACAGACTTCCTGTATAATTGGAAGTCACCCATAGTCATTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTACAGACTTCCTGTATAATTGGAAGTCACCCATAGTCATTTCCC  100

seq1  TTGTAAGAATCTGAAGCAGATCTTACTGACTGAACCAAAAAGCAGTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGAATCTGAAGCAGATCTTACTGACTGAACCAAAAAGCAGTTAAG  150

seq1  CCCAACTAATGATCTGTTTGGGGCTTACCCCACTTCAAAGCCCAGATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTAATGATCTGTTTGGGGCTTACCCCACTTCAAAGCCCAGATCTG  200

seq1  CAAAGACAGTCAGGGACCTTTCCCTAGCCTAGTCTTCTTGGTCCTTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAGTCAGGGACCTTTCCCTAGCCTAGTCTTCTTGGTCCTTCATT  250

seq1  GTCTATTGGATTGTCTCTACCAAGAGAATTTGATAGCTCTCAGAAACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTGGATTGTCTCTACCAAGAGAATTTGATAGCTCTCAGAAACCTT  300

seq1  TATATTCTCAGAACCCCACAGAGCTCTTCTTCACCTAGTAGGTACCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTCAGAACCCCACAGAGCTCTTCTTCACCTAGTAGGTACCCAAG  350

seq1  AGTCTCTGTTGGATGACAGCATAGTTAATTTGCCTATTACTTGAACTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGTTGGATGACAGCATAGTTAATTTGCCTATTACTTGAACTCAA  400

seq1  AAATAATCCCAACCTAAGGGTACAAGAATTCTCAAACACCCGTCTTGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCCCAACCTAAGGGTACAAGAATTCTCAAACACCCGTCTTGCGT  450

seq1  TTAGTAAAGGAGAAAGAGAATAGATAGAGTTTAGTAAAGAAACATCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAAGGAGAAAGAGAATAGATAGAGTTTAGTAAAGAAACATCAATC  500

seq1  ACAAATGTTATTCTTTAGAACTGGAGGCACTGAAAGACAGTTGTTATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTTATTCTTTAGAACTGGAGGCACTGAAAGACAGTTGTTATGTG  550

seq1  ATCTCACTTGTATTTGGATGCTACAAAAGTTGGCTTCATGGAAGTGAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTTGTATTTGGATGCTACAAAAGTTGGCTTCATGGAAGTGAGCC  600

seq1  CTAAAATAGTGTTTCGCAGAGGCTGGGAAGGATGTGAAGGACAGCACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATAGTGTTTCGCAGAGGCTGGGAAGGATGTGAAGGACAGCACTAT  650

seq1  GCTTTGGGTCTGAATTTTACCTCTAAAGCTCATGCGTTGAAGGCTTGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGTCTGAATTTTACCTCTAAAGCTCATGCGTTGAAGGCTTGGTC  700

seq1  TCAGTGCAGCAGTGTGCAGAGTTGAGGGTCTTAGAAAATGACAAGATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCAGCAGTGTGCAGAGTTGAGGGTCTTAGAAAATGACAAGATAAT  750

seq1  GAGGGTTCTAATGTCACTGATGGGTTAAGTGACTGAAGAAGCCATGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTCTAATGTCACTGATGGGTTAAGTGACTGAAGAAGCCATGGCTG  800

seq1  CATGGGCTATGGGGATATGGTAGGATCTTTGCAGGGTGGGGCTTAACTGG  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CATGGGCTATGGGGATATGGTAGGATCTTTGCAGGGTGGGGCTTTACTGG  850

seq1  AGGATATGGGATACTGAGGAAGGGATGATGGCTCTGAAGAATCTGTTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGGGATACTGAGGAAGGGATGATGGCTCTGAAGAATCTGTTTGG  900

seq1  TCTTAGCATCCTGACCTCAACCCCAACCTGGCCACCAGAGTAAGCTAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCATCCTGACCTCAACCCCAACCTGGCCACCAGAGTAAGCTAAAC  950

seq1  AGATGGTCCCCACCACAGGCTCACTCCTGTGTGCCTTCCTGCCATGAGTC  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGATGGTCCCCACCACA-GCTCACTCCTGTGTGCCTTCCTGCCATGAGTC  999

seq1  TAAACTCACTGGAGTCAGTGGACAACAGTCTCAATCCTCTGACCCCTGAG  1050
      |||||||||| |||||||| ||||||||||||||| ||||||||||||||
seq2  TAAACTCACTTGAGTCAGT-GACAACAGTCTCAATTCTCTGACCCCTGAG  1048

seq1  CCCAAATAAACCTCCATTTTTTTTATCCCACA-TTTCCCCATTATTTACA  1099
      ||||||||||||| || ||||||||||||||| ||| || ||||||||||
seq2  CCCAAATAAACCT-CAATTTTTTTATCCCACAGTTTTCCAATTATTTACA  1097

seq1  GAAAGCT  1106
      |||||||
seq2  GAAAGCT  1104


seq1: chr13_29301834_29302927
seq2: B6Ng01-316O12.g_68_1164 (reverse)

seq1  GAGG-TCTCACTCCCAGGCCCAAGGTGTCCTGGAACTTTCTAT-GTTGCC  48
      |||| ||||||||||||| ||| ||| |||||||||||||||| || |||
seq2  GAGGTTCTCACTCCCAGG-CCAGGGTATCCTGGAACTTTCTATGGTGGCC  49

seq1  TAGGATTGCCTTGAATTTGAAGCCACCCTCCTGCCCTCAGCCTGAAGTGC  98
      ||||||   |||||||| ||||| |||   ||| ||||||||||||||||
seq2  TAGGAT--GCTTGAATTGGAAGCAACC--TCTG-CCTCAGCCTGAAGTGC  94

seq1  TGGC-ACAGAAGGCAGGA-GCTACCTCAGCTAGTTG-TTTTGCTGCTTGG  145
      |||| ||||||||||||| |||| |||||||||||| |||||||||||||
seq2  TGGCAACAGAAGGCAGGAGGCTA-CTCAGCTAGTTGTTTTTGCTGCTTGG  143

seq1  GCAAAGAATTCGAAGAGCAT-ATAATT-AGCAGATGCAGAAACCTTGGC-  192
      |||||||||||||||||||| |||||| ||||||||||||||| | ||| 
seq2  GCAAAGAATTCGAAGAGCATAATAATTAAGCAGATGCAGAAACTTGGGCA  193

seq1  AACATTGTCTACACCTGCAAAGCTG-CTATTTGGGACACTGGGTCCCAAT  241
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  AACATTGTCTACA-CTGCAAAGCTGACTATTTGGGACACTGGGTCCCAAT  242

seq1  AAA--TACCCAGGGTGGTGGCAGATTTTCTTTTTTCCCTGTGTGAAGAAA  289
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACCCAGGGTGGTGGCAGATTTTCTTTTTTCCCTGTGTGAAGAAA  292

seq1  GTTAAGCCTTATCTAGGTGGTCCCAGGGAGACCTCGTAGTGTGACCCTTT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGCCTTATCTAGGTGGTCCCAGGGAGACCTCGTAGTGTGACCCTTT  342

seq1  CTGTTCTTGTTTTCTTCTTGCTGCACGGAGACCCAGGCTTGTGTCCTTTA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTGTTTTCTTCTTGCTGCACGGAGACCCAGGCTTGTGTCCTTTA  392

seq1  GGACCTCGTGACTTAAGATAGCTACCATTATAGAATTTGACTTTGCCAGA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCGTGACTTAAGATAGCTACCATTATAGAATTTGACTTTGCCAGA  442

seq1  AGCATTTTCGTCTCAAACAGAAAACAAAAATAGATGCACTTCAAAAATGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTCGTCTCAAACAGAAAACAAAAATAGATGCACTTCAAAAATGA  492

seq1  TCCGAGTGTTGTTGCGCTTCTGATGTCGTGTTTTTCATCTTCCCAGCCGC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGTGTTGTTGCGCTTCTGATGTCGTGTTTTTCATCTTCCCAGCCGC  542

seq1  GGTAAAAAGAAATTCCTGCCATTTGAAATAATCGCCAACTCTCCTGAGAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAAAGAAATTCCTGCCATTTGAAATAATCGCCAACTCTCCTGAGAA  592

seq1  GCGTTAACAATTAAGCAGCTCTAGTGTGTGTGGCCCAGCCCTCCCTCCGC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTAACAATTAAGCAGCTCTAGTGTGTGTGGCCCAGCCCTCCCTCCGC  642

seq1  CTTCCTGGCTAACCTGTGAGCAGCACAGTGAACCAGAGGCGGTAATAGGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGCTAACCTGTGAGCAGCACAGTGAACCAGAGGCGGTAATAGGA  692

seq1  GGGCGCTCAGCAGGTAAGGAGAAGGTTCTTTTTCCTCTAAAAGACACCAC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGCTCAGCAGGTAAGGAGAAGGTTCTTTTTCCTCTAAAAGACACCAC  742

seq1  AGCACAAGCTCGCTTTGATAAGCCCCACCATTTCTCCTCAGCGTGATGTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAGCTCGCTTTGATAAGCCCCACCATTTCTCCTCAGCGTGATGTT  792

seq1  TCCTTTTGTGCCGGCGAGAGCTCATGTGGGCCCTGACCCCAACTCCCCCC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGTGCCGGCGAGAGCTCATGTGGGCCCTGACCCCAACTCCCCCC  842

seq1  GCCCCCGCGCACATTTAAAACATTAGCAGGAAACAGAAGTCGAAGACATT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCGCGCACATTTAAAACATTAGCAGGAAACAGAAGTCGAAGACATT  892

seq1  GCTCCAAAGACAGAAACGTTCTTTGTCAAGTCATTCCTCTTCAGTTTGCT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAAGACAGAAACGTTCTTTGTCAAGTCATTCCTCTTCAGTTTGCT  942

seq1  TTGTTCCCGAGAAGGACCGCTGTAACCTGATAACCCCAAGCTCCGAGCAC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCCGAGAAGGACCGCTGTAACCTGATAACCCCAAGCTCCGAGCAC  992

seq1  AGAGGCTCCGCCCCTTTCCCAGGCAGCTGCCTGGACAGGTAACTTGGGAG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTCCGCCCCTTTCCCAGGCAGCTGCCTGGACAGGTAACTTGGGAG  1042

seq1  CAGCTGAAGGTCAATGAAGAAGAAATGTCAAGACGCGTGCAAGCTGAAAG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAAGGTCAATGAAGAAGAAATGTCAAGACGCGTGCAAGCTGAAAG  1092

seq1  AATTC  1094
      |||||
seq2  AATTC  1097


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