BAC Information

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BAC

Clone NameB6Ng01-317C10
Chromosome13 (Build37)17 (Build37)
Map Location 45,005,803 - 45,006,61167,776,646 - 67,777,492
singlet/doubletsingletsinglet
Overlap geneJarid2
Upstream geneLOC100039432, A730030A06, EG637868, EG667157
Downstream geneDtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr, Atxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317C10.bB6Ng01-317C10.g
ACCGA107368GA107369
length1,0961,143
definitionB6Ng01-317C10.b B6Ng01-317C10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,005,803 - 45,006,611)(67,776,646 - 67,777,492)
sequence
gaattctgggaacttttcagaaaatgctagggccctgagagacggggctg
gtggttgttggtcattttggggcaggcttggttgtgttttgttagtagtc
gtgctcaaagaagaaacaaaaagaaaaatattagactctgggacctctgt
ttctgtcgctctgtctctctctctctctctctctctctctctctctctgt
ctctcctctacccttctttctctcttatctagagataggggtaaaatagc
gggggtggggataaagggtgtggaaggtgattttggtctcgagaccagca
tgaggtagaaaagaccatgccaatatttagccagggaatagtcactccta
caacataaagagatgtcattaagagtgtcctcaggagaggcatatggaat
tctgctctcacagacctaatactttaagaaaaagctgtctgcccctcccc
acttgctacatagagataagagtcttctattctggccctcctcccaggag
cagggaggcctggcttaagagcctctgtccacagtgaacaaggtgggatc
ctggtttggacagaagggagtctcccaggcttcccttgcaaggcccaaag
tattcatagcaagcagacactccgtggagtggcttttacctaagccagaa
gaagcaccacctttcacttctcagcacacttaactgtggttgctagccaa
aaacagccttcaggagtcaggattaatatttgaaaagcctttttctgata
ctcttgatttttaactagatgcctcagctattcggggggtccacagtttt
tcagatttcatcaaactgcatggactctggccccaaggtcccaggcctct
cttactagtgagccacccggctctgtttctcacgatgaaagcctatagaa
atcaggttcatactttaccaggcacagcaccaaaggtgacgtatgaatgg
aaccctgtgtttatttgggaggacagtgaggttccatccatgcctgcaga
agggaaagaaggggctgtcgaagttggtggggatagtcctcaacacggac
aagatatgtacaattacctttgaaagggtcctgatttttcccacgg
gaattcagaacttttcagctggggaacgagagtaccagtgagtacagctt
tacgaggtaagcctggccttgaactttctaaggaaattcaagacagtcta
tcagaagtaaagtggaaaatgtttggccttgaattttttctagtgttaga
agcccttttgttccttttcacatgttatcaagtggttaaggcagggcgga
ttctggatgaaattcagggcaatctatcagaagtaaagcggggagagaga
gtaggagcaaagagaaaatatggttcacaaaataagtatacaggcctttc
cacgggtcttgaacctgaggaaaagtttaggtcaggtaagaatacctggg
gagagattggaaggaaggagaaggaaaaagaaaagaaaaaagatcaatca
gcagaggtttctaggagaaggagcctatactcatcactaggtgagctcaa
ggagccagtttttaatagttctgaatcagatgaaaaggctattagggcct
ggaaggcgctctcccgagcaggtgaagccactggacaataatgacagagg
caggctcttgcagcctacaaggtcttattgtctaccctggagttgtagat
caagattataaaggggaacttcaggttctctgttcttgtcctcaagttgt
cttttctatatcacaaagagacagaatagctcaactaataattttgccaa
gcctacatggctgttttttcttcctctggtattcctagagctgccagaga
gattggttctactggaaatgattctgattacttaataatgcctttagatt
gttgtcaaattttatctactcacgtaggggtaaaccctcgtggcgtcagg
ccatttacaggtctgacaaatggatgttacacatgtttcttcctttggaa
aacttcatatctccatgtgtccattgacacatgttctggcatcatgtttg
cttctccgttaaccggagaaaaagcctcacatgtgattcaacattgcctt
gaaggcatgagtgcttggggaaactccagactccttaggactgatatgaa
ccagcttatacgtctctcaaaatcaacagttctgcccgtcggatggacgt
gaacccacctgactgaacttcatacaccctcaagacagtattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45005803_45006611
seq2: B6Ng01-317C10.b_314_1139 (reverse)

seq1  CGGTGGG-AAAATCAGAACCCTTTTCAAGGTAATTGTACATTATCTTGTC  49
      | ||||| |||||||| |||||||  |||||||||||||| |||||||||
seq2  CCGTGGGAAAAATCAGGACCCTTTCAAAGGTAATTGTACA-TATCTTGTC  49

seq1  CGTGTTTGAGGACTCTCCCCACCAGCTCTGACAGCCCCTTCTTTCCC-TC  98
      |||| ||||||||| ||||||||| ||  |||||||||||||||||| ||
seq2  CGTG-TTGAGGACTATCCCCACCAACTTCGACAGCCCCTTCTTTCCCTTC  98

seq1  TGCAGGCATGGATGGAACCTCACTGTCCTCCCAAAT-AACACAGGG-TCC  146
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  TGCAGGCATGGATGGAACCTCACTGTCCTCCCAAATAAACACAGGGTTCC  148

seq1  A-TCCTGCGTCACC-TTGGTGCTGTGCCTGGT-AAGTATG-ACCTGATCT  192
      | || | ||||||| ||||||||||||||||| ||||||| ||||||| |
seq2  ATTCATACGTCACCTTTGGTGCTGTGCCTGGTAAAGTATGAACCTGATTT  198

seq1  CTTCTGGC-TTCATCGTGAG-AACAGAGCCGGGTGGCTCACTAGT-AGAG  239
      ||   ||| ||||||||||| |||||||||||||||||||||||| ||||
seq2  CTATAGGCTTTCATCGTGAGAAACAGAGCCGGGTGGCTCACTAGTAAGAG  248

seq1  AGGCCTGGGGCCTTGGGGCCAGAGTCCATGCAGTTTGATGAAATCTG-AA  288
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  AGGCCTGGGACCTTGGGGCCAGAGTCCATGCAGTTTGATGAAATCTGAAA  298

seq1  AACTGTGGA-CCCCCGAATAGCTGAGGCATCTAGTT-AAAATC-AGAGTA  335
      ||||||||| |||||||||||||||||||||||||| |||||| ||||||
seq2  AACTGTGGACCCCCCGAATAGCTGAGGCATCTAGTTAAAAATCAAGAGTA  348

seq1  TCAG-AAAAGGCTTTTC-AATATTAATCCTGACTCCTGAAGGCTGTTTTT  383
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCAGAAAAAGGCTTTTCAAATATTAATCCTGACTCCTGAAGGCTGTTTTT  398

seq1  -GCTAGCAACCACAGTTAAGTGTGCTGAGAAGTGAAAGGTGCTGCTTCTT  432
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGCTAGCAACCACAGTTAAGTGTGCTGAGAAGTGAAAGGTGGTGCTTCTT  448

seq1  CTGGCTTAGGT-AAAGCCACTCCACGGAGTGTCTGCTTGCTATGAATACT  481
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTAGGTAAAAGCCACTCCACGGAGTGTCTGCTTGCTATGAATACT  498

seq1  TTGGGCCTTGCAAGGGAAGCCTGGGAGACTCCCTTCTGTCCAAACCAGGA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCTTGCAAGGGAAGCCTGGGAGACTCCCTTCTGTCCAAACCAGGA  548

seq1  TCCCACCTTGTTCACTGTGGACAGAGGCTCTTAAGCCAGGCCTCCCTGCT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCTTGTTCACTGTGGACAGAGGCTCTTAAGCCAGGCCTCCCTGCT  598

seq1  CCTGGGAGGAGGGCCAGAATAGAAGACTCTTATCTCTATGTAGCAAGTGG  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGGAGGGCCAGAATAGAAGACTCTTATCTCTATGTAGCAAGTGG  648

seq1  GGAGGGGCAGACAGCTTTTTCTTAAAGTATTAGGTCTGTGAGAGCAGAAT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGCAGACAGCTTTTTCTTAAAGTATTAGGTCTGTGAGAGCAGAAT  698

seq1  TCCATATGCCTCTCCTGAGGACACTCTTAATGACATCTCTTTATGTTGTA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATGCCTCTCCTGAGGACACTCTTAATGACATCTCTTTATGTTGTA  748

seq1  GGAGTGACTATTCCCTGGCTAAATATTGGCATGGTCTTTTCTACCTCATG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGACTATTCCCTGGCTAAATATTGGCATGGTCTTTTCTACCTCATG  798

seq1  CTGGTCTCGAGACCAAAATCACCTTCCA  809
      ||||||||||||||||||||||||||||
seq2  CTGGTCTCGAGACCAAAATCACCTTCCA  826

seq1: chr17_67776646_67777492
seq2: B6Ng01-317C10.g_407_1208

seq1  ATACCTGGGGAGAGATTAGAAGGAAG------------GAAAAGAAAAAA  38
      ||||||||||||||||| ||||||||            ||||||||||||
seq2  ATACCTGGGGAGAGATTGGAAGGAAGGAGAAGGAAAAAGAAAAGAAAAAA  50

seq1  GATAAATTAGCGGAGGTCTCTAGGAGAAGGAACCTATACTCATCACTAGA  88
      ||| ||| ||| ||||| ||||||||||||| ||||||||||||||||| 
seq2  GATCAATCAGCAGAGGTTTCTAGGAGAAGGAGCCTATACTCATCACTAGG  100

seq1  TGAGCTCAAGGAGCCAGTTCTTAGTAGTTCTGAATCAGATGAAAAGGCTA  138
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  TGAGCTCAAGGAGCCAGTTTTTAATAGTTCTGAATCAGATGAAAAGGCTA  150

seq1  TTAGGGCCTGGAAGGCGCTCTCCCGAGCAGGTGAAGCCACTGGACAACTA  188
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTAGGGCCTGGAAGGCGCTCTCCCGAGCAGGTGAAGCCACTGGACAA-TA  199

seq1  ACAAAGATCGTCCAGGGACCTCAGGAGTCCTTCTCAGATTTTGTGGCCAG  238
      |                                                 
seq2  A-------------------------------------------------  200

seq1  AGAGACAGAGGCAGGCTCTTGCAGCCTACAAGGTCTTATTGTCCACCCTG  288
         |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  --TGACAGAGGCAGGCTCTTGCAGCCTACAAGGTCTTATTGTCTACCCTG  248

seq1  GAGTTGTAGATCAGGATTGTAAAGGGGAACTTCAGGTTCTCTGTTCTTGT  338
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  GAGTTGTAGATCAAGATTATAAAGGGGAACTTCAGGTTCTCTGTTCTTGT  298

seq1  CCTCAAGTTGTCTTTTCTATATCACAAGGGGACAGAATAGCTCAACTAAT  388
      ||||||||||||||||||||||||||| | ||||||||||||||||||||
seq2  CCTCAAGTTGTCTTTTCTATATCACAAAGAGACAGAATAGCTCAACTAAT  348

seq1  AATTTTGCCAAGCCTACATGGCTGTTTTTTCTTCCTCTGGTATTCCTAGA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCCAAGCCTACATGGCTGTTTTTTCTTCCTCTGGTATTCCTAGA  398

seq1  GCTGCAAGAGGGATCGGTTCTACTGGAAATGATTCTGATTACTTAATAAT  488
      ||||| |||| ||| |||||||||||||||||||||||||||||||||||
seq2  GCTGCCAGAGAGATTGGTTCTACTGGAAATGATTCTGATTACTTAATAAT  448

seq1  GCCTTTAGATTGTTGTCAAATTTTATCTACTCATGTAGGGGTAAACCCTC  538
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCCTTTAGATTGTTGTCAAATTTTATCTACTCACGTAGGGGTAAACCCTC  498

seq1  GTGGCGTCAGGCCA-TTACAGGTCTGGCAAATGGATGTCACGCATATTTC  587
      |||||||||||||| ||||||||||| ||||||||||| || ||| ||||
seq2  GTGGCGTCAGGCCATTTACAGGTCTGACAAATGGATGTTACACATGTTTC  548

seq1  CTCCTTTGGGAGAAATCAATATTTACGTGTCTCTATTGACACATGTTCTG  637
       |||||| ||| || |  |||| | | ||| || ||||||||||||||||
seq2  TTCCTTT-GGAAAACTTCATATCTCCATGTGTCCATTGACACATGTTCTG  597

seq1  GCATCATGTTTGCTTCTCCTTTAGCCGGAGAAAAAGCCTCACATGTGATT  687
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  GCATCATGTTTGCTTCTCCGTTAACCGGAGAAAAAGCCTCACATGTGATT  647

seq1  CAACATTGCCTTG-AGGCATGGAGTGCTTGGGGGAAATCCAAACTCCTTA  736
      ||||||||||||| |||||| |||||||||||| || |||| ||||||||
seq2  CAACATTGCCTTGAAGGCAT-GAGTGCTTGGGGAAACTCCAGACTCCTTA  696

seq1  AGACTGATAATGGACCAGCTTATACATCTCAAAAATTCCAGCAGTTCTG-  785
       ||||||| ||| |||||||||||| ||||  ||| | || |||||||| 
seq2  GGACTGAT-ATGAACCAGCTTATACGTCTCTCAAAAT-CAACAGTTCTGC  744

seq1  CCGTCAGATGGACGTG-ACCCACCTGACTGGACTTCCATACAACCCTCAA  834
      ||||| |||||||||| ||||||||||||| |||| ||||| ||||||||
seq2  CCGTCGGATGGACGTGAACCCACCTGACTGAACTT-CATAC-ACCCTCAA  792

seq1  GGACAGGGTATTG  847
       ||||  ||||||
seq2  -GACA--GTATTG  802