BAC Information

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BAC

Clone NameB6Ng01-317D11
Chromosome13 (Build37)
Map Location 50,184,356 - 50,323,310
singlet/doubletdoublet
Overlap geneLOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176
Upstream geneWnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907
Downstream geneLOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317D11.bB6Ng01-317D11.g
ACCGA107418GA107419
length1,1651,087
definitionB6Ng01-317D11.b B6Ng01-317D11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,322,119 - 50,323,310)(50,184,356 - 50,185,139)
sequence
gaattcagaaatctgccttcttctgccttccaagtgctgggattaaaggc
ctgggccacacttcctggcaaggtagatgattcttaaaagaatctccacg
aaagcaggttccataaactgagctcacatgtccaggaagccagctgttta
aggattgcaggggaaatacagctgaccccaccactgaaaactggtgtttg
caaaaatgcacaaaagagctcacactttcaaaaacattatctagagaaaa
ttgctaactacccccatactgcccctgcaaaacccctttcccaattaatg
aacattagctgcaaaactcctgctttgtgtgcaggctaaatcatctcagt
cttatgtgccctgccatcttgtagcagcatatactatcctaagcatccac
acgccgcacccacagaatttattaggaatcaggacctaatacacacacca
ctgggggcagccagcagccaggtgtttcatcagactctcatggacacctc
catatcagtaccacgtactgacatgcctccatggcacagacacagactct
taacagtgtagtaaaacagtgccaggctgatggcatccaggagggcctgt
tacatagcagtatatgattgatgtgctgccttgagtatgaaacatatcag
gctcagcttgtcccccctgcaatccaaaaaaaaaaaaaaaagctggatat
agagtattgttacagacctcacacctcacataagcatctagctatcagac
cctctggtcttctacacattctgcagacactgctgatgaacagccctggt
ataaccacattgcttttgaaaacactcgacaggcactgatgcttggcaag
ccaaccctgagccttcactcactgataattgctgaacttcttcacagaac
tatcactggactctcaaacctctagctactgaataatgacacagaaacct
atatttgttatgtagcttgggccttagctgctacccccacacagcatgta
taccttcataacccatttattctatcacatttctcacatgtatcatacct
catgtcagtacatctgactctgcaatttctgtctaaaatcctccaactct
gattcttcccagagtctctctcatcatagtcaccttcgtattcgcagatt
acgcttgcagctctt
gaattcctcacttccatctcttatattctgttggtgatacttgcatatgt
agtttctctttcttccctttcttcccaagctccatgattcactcagttgt
ttttctttattgcttctgtttccattttcagagcttgaccaattttatgc
attttttcacatgcttgattttgcttttttatatttcataattgatttat
gaatttcttctctaaagacctgtatcccctttataaatttagatttaaag
tcatctctttgttctttggctcttagtggataagaatgcagagagcagcc
atccttgtctcactgcaaatttcaagggacatactctcagttttgctgtg
tttgatataatgtaggcacaatgtctaccatataaagcctttatttcatc
caacaatgttctgtcaattcagaatttgttaggaattctcatcatttaat
catgttgaactatgtgtgtttatgtggctgtgtgagtatgtatgtgtgtg
ggggaacacacagagtctagaagggataactggtgtccttcctgctggaa
tcacaggcaattgagagctgtttgacctgggtgatagaatctgggtgtta
tgcaagaacaggaagtgtaagtcgacttaaccaatgaaatatctctccag
tctttttcttttttatcagacaggatttcattgtggaacattggaggact
gtttggtttggaactcactatgtaaccgggatctggtcacattcacagag
actggccttgtttgcatccgaactactactgatatttaaggcatgtccac
cattcttgtttcctaattatttttgatatgtcatagtggattttctattt
attccacattctcaagtttttttcctatatgtgtcttcaacaaatcctca
ccaccaataaatcctctagatttcattcagatctgttataacatcctgtc
cctatcatccctaattttgtgctctgggactctacatctttgattacttt
gagtagagttttccactctatttattttccaaagaactacctatgtttag
ctaaaggttatagcatctcatttagtatctatgacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_50322119_50323310
seq2: B6Ng01-317D11.b_49_1213 (reverse)

seq1  AAGAGCTGCAAGCCTATATCTGTGCAGAATACAGAAGGTGGAACTTATGG  50
      ||||||||||||| || |||||    |||||| |||||||  || |||  
seq2  AAGAGCTGCAAGCGTA-ATCTG---CGAATAC-GAAGGTG--AC-TAT--  40

seq1  GATGAGAGAGGAACTCTGGGAAGAAATCAGAGGTGGGAGGGATTTTCCAG  100
      ||||||||||  ||||||||||| |||||||| |||   |||||||  ||
seq2  GATGAGAGAG--ACTCTGGGAAG-AATCAGAGTTGG--AGGATTTT--AG  83

seq1  ACAGAAA-TGCAGGAAGTCAGATGTACTGAACATGAGGTTATGATACATG  149
      ||||||| |||||  |||||||||||||| |||||||| |||||||||||
seq2  ACAGAAATTGCAG--AGTCAGATGTACTG-ACATGAGG-TATGATACATG  129

seq1  TGAGAAATGTGAATTAGAATAAATGGGTTAATGAAGTTATACATGCTTGT  199
      ||||||||||||  ||||||||||||||| |||||| ||||||||| |||
seq2  TGAGAAATGTGA--TAGAATAAATGGGTT-ATGAAGGTATACATGC-TGT  175

seq1  TGTGGGGTAGCAAGCTAAGGCCCAAGCTACAATAAACAAATATAAGTTTC  249
         |||||||| |||||||||||||||||||   |||||||||| |||||
seq2  GTGGGGGTAGC-AGCTAAGGCCCAAGCTACA--TAACAAATATAGGTTTC  222

seq1  TGTGTCATTATTCAGTAGCTAGAGGTTTGAGAGTCCAGTGATAGTTCTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCATTATTCAGTAGCTAGAGGTTTGAGAGTCCAGTGATAGTTCTGT  272

seq1  GAAGAAGTTCAGCAATTATCAGTGAGTGAAGGCTCAGGGTTGGCTTGCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTTCAGCAATTATCAGTGAGTGAAGGCTCAGGGTTGGCTTGCCA  322

seq1  AGCATCAGTGCCTGTCGAGTGTTTTCAAAAGCAATGTGGTTATACCAGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGTGCCTGTCGAGTGTTTTCAAAAGCAATGTGGTTATACCAGGG  372

seq1  CTGTTCATCAGCAGTGTCTGCAGAATGTGTAGAAGACCAGAGGGTCTGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATCAGCAGTGTCTGCAGAATGTGTAGAAGACCAGAGGGTCTGAT  422

seq1  AGCTAGATGCTTATGTGAGGTGTGAGGTCTGTAACAATACTCTATATCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGATGCTTATGTGAGGTGTGAGGTCTGTAACAATACTCTATATCCA  472

seq1  GCTTTTTTTTTTTTTTTTGGATTGCAGGGGGGACAAGCTGAGCCTGATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTTTTTTTTTTTGGATTGCAGGGGGGACAAGCTGAGCCTGATAT  522

seq1  GTTTCATACTCAAGGCAGCACATCAATCATATACTGCTATGTAACAGGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATACTCAAGGCAGCACATCAATCATATACTGCTATGTAACAGGCC  572

seq1  CTCCTGGATGCCATCAGCCTGGCACTGTTTTACTACACTGTTAAGAGTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGATGCCATCAGCCTGGCACTGTTTTACTACACTGTTAAGAGTCT  622

seq1  GTGTCTGTGCCATGGAGGCATGTCAGTACGTGGTACTGATATGGAGGTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTGCCATGGAGGCATGTCAGTACGTGGTACTGATATGGAGGTGT  672

seq1  CCATGAGAGTCTGATGAAACACCTGGCTGCTGGCTGCCCCCAGTGGTGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGAGTCTGATGAAACACCTGGCTGCTGGCTGCCCCCAGTGGTGTG  722

seq1  TGTATTAGGTCCTGATTCCTAATAAATTCTGTGGGTGCGGCGTGTGGATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAGGTCCTGATTCCTAATAAATTCTGTGGGTGCGGCGTGTGGATG  772

seq1  CTTAGGATAGTATATGCTGCTACAAGATGGCAGGGCACATAAGACTGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGATAGTATATGCTGCTACAAGATGGCAGGGCACATAAGACTGAGA  822

seq1  TGATTTAGCCTGCACACAAAGCAGGAGTTTTGCAGCTAATGTTCATTAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAGCCTGCACACAAAGCAGGAGTTTTGCAGCTAATGTTCATTAAT  872

seq1  TGGGAAAGGGGTTTTGCAGGGGCAGTATGGGGGTAGTTAGCAATTTTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGGGGTTTTGCAGGGGCAGTATGGGGGTAGTTAGCAATTTTCTC  922

seq1  TAGATAATGTTTTTGAAAGTGTGAGCTCTTTTGTGCATTTTTGCAAACAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAATGTTTTTGAAAGTGTGAGCTCTTTTGTGCATTTTTGCAAACAC  972

seq1  CAGTTTTCAGTGGTGGGGTCAGCTGTATTTCCCCTGCAATCCTTAAACAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCAGTGGTGGGGTCAGCTGTATTTCCCCTGCAATCCTTAAACAG  1022

seq1  CTGGCTTCCTGGACATGTGAGCTCAGTTTATGGAACCTGCTTTCGTGGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCCTGGACATGTGAGCTCAGTTTATGGAACCTGCTTTCGTGGAG  1072

seq1  ATTCTTTTAAGAATCATCTACCTTGCCAGGAAGTGTGGCCCAGGCCTTTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTAAGAATCATCTACCTTGCCAGGAAGTGTGGCCCAGGCCTTTA  1122

seq1  ATCCCAGCACTTGGAAGGCAGAAGAAGGCAGATTTCTGAATTC  1192
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTTGGAAGGCAGAAGAAGGCAGATTTCTGAATTC  1165

seq1: chr13_50184356_50185139
seq2: B6Ng01-317D11.g_368_1151

seq1  CTTGTCTCACTGCAAATTTCAAGGGACATACTCTCAGTTTTGCTGTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCACTGCAAATTTCAAGGGACATACTCTCAGTTTTGCTGTGTTT  50

seq1  GATATAATGTAGGCACAATGTCTACCATATAAAGCCTTTATTTCATCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAATGTAGGCACAATGTCTACCATATAAAGCCTTTATTTCATCCAA  100

seq1  CAATGTTCTGTCAATTCAGAATTTGTTAGGAATTCTCATCATTTAATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTCTGTCAATTCAGAATTTGTTAGGAATTCTCATCATTTAATCAT  150

seq1  GTTGAACTATGTGTGTTTATGTGGCTGTGTGAGTATGTATGTGTGTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACTATGTGTGTTTATGTGGCTGTGTGAGTATGTATGTGTGTGGGG  200

seq1  GAACACACAGAGTCTAGAAGGGATAACTGGTGTCCTTCCTGCTGGAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACAGAGTCTAGAAGGGATAACTGGTGTCCTTCCTGCTGGAATCA  250

seq1  CAGGCAATTGAGAGCTGTTTGACCTGGGTGATAGAATCTGGGTGTTATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAATTGAGAGCTGTTTGACCTGGGTGATAGAATCTGGGTGTTATGC  300

seq1  AAGAACAGGAAGTGTAAGTCGACTTAACCAATGAAATATCTCTCCAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGGAAGTGTAAGTCGACTTAACCAATGAAATATCTCTCCAGTCT  350

seq1  TTTTCTTTTTTATCAGACAGGATTTCATTGTGGAACATTGGAGGACTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTTATCAGACAGGATTTCATTGTGGAACATTGGAGGACTGTT  400

seq1  TGGTTTGGAACTCACTATGTAACCGGGATCTGGTCACATTCACAGAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGAACTCACTATGTAACCGGGATCTGGTCACATTCACAGAGACT  450

seq1  GGCCTTGTTTGCATCCGAACTACTACTGATATTTAAGGCATGTTCCACCA  500
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGCCTTGTTTGCATCCGAACTACTACTGATATTTAAGGCATG-TCCACCA  499

seq1  TTCTTGTTTCCTAATTA-TTTTGATATGTCATAGTGGATTTTCTATTTAT  549
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTCTTGTTTCCTAATTATTTTTGATATGTCATAGTGGATTTTCTATTTAT  549

seq1  TCCACATTCTCAAGTTTTTTTCCTATATGTGTCTTCAACAAATCCTCACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATTCTCAAGTTTTTTTCCTATATGTGTCTTCAACAAATCCTCACC  599

seq1  ACCAAT-AATCCTCTAGATTTCA-TCAGAATCTGTTATAACAT-CTGT-C  645
      |||||| |||||||||||||||| |||| |||||||||||||| |||| |
seq2  ACCAATAAATCCTCTAGATTTCATTCAG-ATCTGTTATAACATCCTGTCC  648

seq1  CTATCATCTCTAATTTTGTTGTCTGGGACTCTACATCTTTGATTACTTTG  695
      |||||||| ||||||||||  |||||||||||||||||||||||||||||
seq2  CTATCATCCCTAATTTTGTGCTCTGGGACTCTACATCTTTGATTACTTTG  698

seq1  AGTAGGAGGTTTTCAATCCTATTTATTTTCCAAAGAACTAACTATTGTTT  745
      |||||   |||||| |  |||||||||||||||||||||| ||| |||||
seq2  AGTAG--AGTTTTCCACTCTATTTATTTTCCAAAGAACTACCTA-TGTTT  745

seq1  AGCTTAATGTTTATAGTAT-TCATTTAGTATCTATTACAT  784
      ||| ||| | |||||| || ||||||||||||||| ||||
seq2  AGC-TAAAGGTTATAGCATCTCATTTAGTATCTATGACAT  784