BAC Information

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BAC

Clone NameB6Ng01-317M03
Chromosome13 (Build37)
Map Location 21,596,850 - 21,809,195
singlet/doubletdoublet
Overlap geneZfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340
Downstream geneHist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317M03.bB6Ng01-317M03.g
ACCGA107823GA107824
length1,197449
definitionB6Ng01-317M03.b B6Ng01-317M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,596,850 - 21,598,066)(21,808,741 - 21,809,195)
sequence
gaattctctgatgttgaatgaggcctgagttctgggtaaacattttccaa
cattcattgcatttatgccgtttgccctcgttgggcctgcctttattata
gtcttctaacttgtcctcacactgagagactttttctttctcaggaattg
gtaaagaatccttagtatgtatgatagagaccttttggtctgggtccatc
cttataaaatcttttaaagttaatgttttgctcacaactctggccttgac
tcctgtaatgacaaacatacatttttttgcaaatataatttatggactgt
aagtatggcaataatacatgatccagacttaactagaactctcaagcatt
tgttccacaatatgagggcactaaccaaacaggagccaaatcacagatca
aatgttttcattcacccgcatcaagagagtaacatcacagaactaccaga
atgaacatctgacacaaatagctatttatgtctgtctttcttaaaggtaa
agaaaacaatgagtacacacaaatataaaactaaggagtatgggctgggg
acacaggtcatcagtatagaacttgcttaatttgtacaagaccttgggtt
tgaaccctggcattagaagagaataatgtatagtctgtactttacaaaac
acttaagaataacgttaaaataaacttaaaacaaaatagatgttgaagag
attagcaaatagtgtagatgaagaattttatgagtaaagagaagaaagct
aatttaagtttggaaaaagaaataacatcactgacagaaatggttaccac
ctaaaagtccaatcattttaactgtaaaggggttgaggggtacgcttagt
tcattctaacaaggtggtccattgtaacgtgctcttgtagtggctgctgc
tatgaaaacagagtagcttagcaaaagcgttgtctagtcccccgtgaaaa
ctgtgacagagaaatgctttatcagttccctattctagatttacaagtca
gaccatgcggagaacctagagtgctaccagttgcatccctgggaaagcaa
ggctatttgtctcaaattcttgttataataatgcttctgttctttttccc
agttaagtctctacagtggcatgtgcatcccttccagattggcacctcaa
taggcttacgtgtaagccgatcgtaacagtaacgtattcctggtaac
aatttgccgaacgaggtgtgtgtgtaggggggagggtgtctaggggaaat
gtttttagctgtgataccaccaaatgctttaacatcctttgctgattttg
actttgccaaatggcaggacttgtcaatcatgcacataaacaggattcaa
gtgaggattgattgtacagtgattatttgtttatcaacatatgtgctgat
aaaggaacatttcaagacaattctttgtgcagtccggtctgtcctggaac
tcgtcctgcagagtaggctggcctggagttcaagatgtgtctgttttatg
tactaggtccgaggttggctgcctgccttccaaaaaccaatatactctta
gctaaggttagggggttgaactaaccacaagccagggaaaattaggatag
gtaatacacttttttcccacaatgcactatcccagtagtgtttaggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21596850_21598066
seq2: B6Ng01-317M03.b_47_1243

seq1  GAATTCTCTGATGTTGAATGAGGCCTGAGTTCTGGGTAAACATTTTCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGATGTTGAATGAGGCCTGAGTTCTGGGTAAACATTTTCCAA  50

seq1  CATTCATTGCATTTATGCCGTTTGCCCTCGTTGGGCCTGCCTTTATTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTGCATTTATGCCGTTTGCCCTCGTTGGGCCTGCCTTTATTATA  100

seq1  GTCTTCTAACTTGTCCTCACACTGAGAGACTTTTTCTTTCTCAGGAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTAACTTGTCCTCACACTGAGAGACTTTTTCTTTCTCAGGAATTG  150

seq1  GTAAAGAATCCTTAGTATGTATGATAGAGACCTTTTGGTCTGGGTCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAATCCTTAGTATGTATGATAGAGACCTTTTGGTCTGGGTCCATC  200

seq1  CTTATAAAATCTTTTAAAGTTAATGTTTTGCTCACAACTCTGGCCTTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAAATCTTTTAAAGTTAATGTTTTGCTCACAACTCTGGCCTTGAC  250

seq1  TCCTGTAATGACAAACATACATTTTTTTGCAAATATAATTTATGGACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAATGACAAACATACATTTTTTTGCAAATATAATTTATGGACTGT  300

seq1  AAGTATGGCAATAATACATGATCCAGACTTAACTAGAACTCTCAAGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGGCAATAATACATGATCCAGACTTAACTAGAACTCTCAAGCATT  350

seq1  TGTTCCACAATATGAGGGCACTAACCAAACAGGAGCCAAATCACAGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCACAATATGAGGGCACTAACCAAACAGGAGCCAAATCACAGATCA  400

seq1  AATGTTTTCATTCACCCGCATCAAGAGAGTAACATCACAGAACTACCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTCATTCACCCGCATCAAGAGAGTAACATCACAGAACTACCAGA  450

seq1  ATGAACATCTGACACAAATAGCTATTTATGTCTGTCTTTCTTAAAGGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATCTGACACAAATAGCTATTTATGTCTGTCTTTCTTAAAGGTAA  500

seq1  AGAAAACAATGAGTACACACAAATATAAAACTAAGGAGTATGGGCTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAATGAGTACACACAAATATAAAACTAAGGAGTATGGGCTGGGG  550

seq1  ACACAGGTCATCAGTATAGAACTTGCTTAATTTGTACAAGACCTTGGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTCATCAGTATAGAACTTGCTTAATTTGTACAAGACCTTGGGTT  600

seq1  TGAACCCTGGCATTAGAAGAGAATAATGTATAGTCTGTACTTTACAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCTGGCATTAGAAGAGAATAATGTATAGTCTGTACTTTACAAAAC  650

seq1  ACTTAAGAATAACGTTAAAATAAACTTAAAACAAAATAGATGTTGAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGAATAACGTTAAAATAAACTTAAAACAAAATAGATGTTGAAGAG  700

seq1  ATTAGCAAATAGTGTAGATGAAGAATTTTATGAGTAAAGAGAAGAAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAAATAGTGTAGATGAAGAATTTTATGAGTAAAGAGAAGAAAGCT  750

seq1  AATTTAAGTTTGGAAAAAGAAATAACATCACTGACAGAAATGGTTACCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGTTTGGAAAAAGAAATAACATCACTGACAGAAATGGTTACCAC  800

seq1  CTAAAAGTCCAATCATTTTAACTGTAAGGGGGTTGAGGGGTACGCTTAGT  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTAAAAGTCCAATCATTTTAACTGTAAAGGGGTTGAGGGGTACGCTTAGT  850

seq1  TCATTCTAACAAGGTGGTCCATTGTAACGTGCTCTTGTAGTGGCTGCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTAACAAGGTGGTCCATTGTAACGTGCTCTTGTAGTGGCTGCTGC  900

seq1  TATGAAAACAGAGTAGCTTAGCAAAAGCGTTGTCTAGTCCCCCGTGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAACAGAGTAGCTTAGCAAAAGCGTTGTCTAGTCCCCCGTGAAAA  950

seq1  CTGTGACAGAGAAAATGCTTTATCAGTTCACTATTCTAGATTTACAAGTC  1000
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  CTGTGACAGAG-AAATGCTTTATCAGTTCCCTATTCTAGATTTACAAGTC  999

seq1  AGACCATGCGGAGAACCTAGAGTGCTACCAGTTGCATCCCT-GGAAAGCA  1049
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGACCATGCGGAGAACCTAGAGTGCTACCAGTTGCATCCCTGGGAAAGCA  1049

seq1  AAGCTAATTTGTCCTCCAAATTCTTGTTATAATAATTGCCTTCCTGTCTT  1099
      | ||| |||||||   ||||||||||||||||||||   ||||   ||||
seq2  AGGCT-ATTTGTC--TCAAATTCTTGTTATAATAAT--GCTTCTGTTCTT  1094

seq1  TTTTCCAGTTACAGTCTCTACAGTGGCAATGTGCATCCCTCCCAGTATGC  1149
      ||| ||||||| ||||||||||||||| |||||||||||| ||||  || 
seq2  TTTCCCAGTTA-AGTCTCTACAGTGGC-ATGTGCATCCCTTCCAGATTGG  1142

seq1  ACCCCCAATAAGCTACCGTGAAAAGGGCAGATCAGTAAAACAGTAACAGT  1199
        || ||||| |||  |||| ||   || |||| ||  ||||||||| ||
seq2  CACCTCAATAGGCTTACGTGTAA---GCCGATC-GT--AACAGTAAC-GT  1185

seq1  AAATTCCCTTTGGGTAAC  1217
        |||||     ||||||
seq2  --ATTCC----TGGTAAC  1197

seq1: chr13_21808741_21809195
seq2: B6Ng01-317M03.g_69_523 (reverse)

seq1  AGACCTAAACACTACTGGGATAGTGCATTGTGGGAAATACGTGTATTACC  50
      ||||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  AGACCTAAACACTACTGGGATAGTGCATTGTGGGAAAAAAGTGTATTACC  50

seq1  TCTCCTAGTTTTCCCTGGCTTGTGGTTAGTTCAACCCCCTAACCTTAGCT  100
      | ||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAATTTTCCCTGGCTTGTGGTTAGTTCAACCCCCTAACCTTAGCT  100

seq1  AAGAGTATATTGGTTTTTGGAAGGCAGGCACCCAACCTCGGACCTAGTAC  150
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGAGTATATTGGTTTTTGGAAGGCAGGCAGCCAACCTCGGACCTAGTAC  150

seq1  ATAAAACAGACACATCTTGAACTCCAGGCCAGCCTACTCTGCAGGACGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAGACACATCTTGAACTCCAGGCCAGCCTACTCTGCAGGACGAG  200

seq1  TTCCAGGACAGACCGGACTGCACAAAGAATTGTCTTGAAATGTTCCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAGACCGGACTGCACAAAGAATTGTCTTGAAATGTTCCTTTA  250

seq1  TCAGCACATATGCTGATAAACAACTAATCACTGTACAATCAATCCTCACT  300
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  TCAGCACATATGTTGATAAACAAATAATCACTGTACAATCAATCCTCACT  300

seq1  TGAATCCTGTTTATGTGCATGATTGACAAGTCCTGCCATTTGGCAAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCTGTTTATGTGCATGATTGACAAGTCCTGCCATTTGGCAAAGTC  350

seq1  AAAATCAGCAAAGGATGTTAAAGCATTTGGTGGTATCACAGCTAAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGCAAAGGATGTTAAAGCATTTGGTGGTATCACAGCTAAAAACA  400

seq1  TTTCCCCTAGACACCCTCCCCCCTACACACACACCTCGTTCGGCAAATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTAGACACCCTCCCCCCTACACACACACCTCGTTCGGCAAATTG  450

seq1  AATTC  455
      |||||
seq2  AATTC  455