BAC Information

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BAC

Clone NameB6Ng01-318J23
Chromosome13 (Build37)
Map Location 95,339,868 - 95,494,871
singlet/doubletdoublet
Overlap genenone
Upstream geneBhmt, Bhmt2, Dmgdh, Arsb, Cycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1
Downstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318J23.bB6Ng01-318J23.g
ACCGA108463GA108464
length1,0741,104
definitionB6Ng01-318J23.b B6Ng01-318J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,339,868 - 95,340,931)(95,493,778 - 95,494,871)
sequence
gaattcagaacgctgagtaatgaggggacaggggtgttggaccaactgaa
agaaacctaaggtcttttgccttctcagttgcttccctgcagcctctgat
cttacggcaaacttggtttaaatggcagaaaatgcactacacaaaagagg
gaaaaaggcgctctgtgatctggcacaaaactacagctgtactgctcgct
cccttgtctgtctaaatgctgctctgagctttgtcacagtagagctctta
cttagcacacgcacatgcatacacacatgcacacacacacttggtctggc
cagatggctcatcacataaagtcacttaccatcaacccccatgaactgag
tttgatccctagggcacacatagtgagaagagaaccggctcccgaaaggt
tcctcagacctgcacactcgtgtgaatacattcaattaagaaaaagaggg
actggagagagaactcagcagttaacagcactggttgctcttccagacga
ctcaggttcaattcccagcatctgcgtgatagctcacaattgtcagtaac
acctgttccaggggatccaacaccttcatacacatacatgcaggcaaaac
actaatgtacataaaataaaaatacattattaaaagaaaaggctataccg
taatcacaatacagaaatggcaataagggccttcctcaagttagtgagta
aagccctagtttgcaaatgtcatgtcttccaagctgatgctaagatacat
ttacccagtcccacctcctgtggggctggtggccctgggttgttctctct
actgtgtcagtagtgggccagtacaccctcccttcttccctccttccctt
cctccctcctccctccctcccacccaccttttccccttgactgtgactgc
agagaaagttctccatggtcactgttcactattttcctgatttaaaagaa
aaccattgttttatcaccataatgtttgggttattaagctgggaacgaca
ggagtggtatactaaacagggaagccttctcttgcattgaactcaaggaa
tgcctttccagggtctcacagggt
gaattcactgtccttttgcacttctctcttgtcaatatttgattttattt
gaaacaccatgtgtcatatttggaagcagcctttgatttattatgtcctg
cctcttccaattataaagtgttattattaataaaaattaattatattgcc
cactttgaggagctcccattaaacactgcctgtgactggctggggcgtga
tttccttctctgtggggaacttaactttctgagcagagagagagttttct
cactcagaaaaagccgagacagattcaattctagtgaaataatcttgcag
gccatctgcggggacctttttgatgtgaaattaaatgtggcacagacaga
ggttttattacatttacatggacccataaaataacttttatggctcccag
tggtgcaaatcctccttaattttgttaattatttccccccagttatcctt
agccatgtctgctaattcagtattgatcttgatactaagatatgttatag
gcttagaaagtcacctgagtccctgctgaaggaaaaacttaaggaagcag
acctgacgtgaggtaatgttttggatagtttccaattaatattatagctg
agaatgacaatgcccttctagtcaagagttctgaccatttgtgctgggtt
cctagttcccagcaggttgtaggagcacattccagaaaggtctaacagga
agtgtctcctttttgcctcagcttctgaattttgctctgttcaacatgcc
tgctagcattgcctacagctttcagcccccacctaagatctgagaagtca
tttcttgctctgacctcttccttgtttttctgcctgcgttcttcccagtt
ccccttgccacacttcaggtggaaattttccaatacattttcttaaatta
cccattcttaatttttattattgcaaataatcattgctcctgatagttct
tctatgggatgttttacagatttggtggagagaacttaagccttcttcca
actctctgccttccttccttgcacattccgtagagggcagatcaccaaag
cctcagtaaggaacttggggttgtgacattccaccccactggtggaagtg
tgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_95339868_95340931
seq2: B6Ng01-318J23.b_47_1120

seq1  GAATTCAGAACGCTGAGTAATGAGGGGACAGGGGTGTTGGACCAACTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACGCTGAGTAATGAGGGGACAGGGGTGTTGGACCAACTGAA  50

seq1  AGAAACCTAAGGTCTTTTGCCTTCTCAGTTGCTTCCCTGCAGCCTCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTAAGGTCTTTTGCCTTCTCAGTTGCTTCCCTGCAGCCTCTGAT  100

seq1  CTTACGGCAAACTTGGTTTAAATGGCAGAAAATGCACTACACAAAAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGGCAAACTTGGTTTAAATGGCAGAAAATGCACTACACAAAAGAGG  150

seq1  GAAAAAGGCGCTCTGTGATCTGGCACAAAACTACAGCTGTACTGCTCGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGGCGCTCTGTGATCTGGCACAAAACTACAGCTGTACTGCTCGCT  200

seq1  CCCTTGTCTGTCTAAATGCTGCTCTGAGCTTTGTCACAGTAGAGCTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTCTGTCTAAATGCTGCTCTGAGCTTTGTCACAGTAGAGCTCTTA  250

seq1  CTTAGCACACGCACATGCATACACACATGCACACACACACTTGGTCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCACACGCACATGCATACACACATGCACACACACACTTGGTCTGGC  300

seq1  CAGATGGCTCATCACATAAAGTCACTTACCATCAACCCCCATGAACTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGCTCATCACATAAAGTCACTTACCATCAACCCCCATGAACTGAG  350

seq1  TTTGATCCCTAGGGCACACATAGTGAGAAGAGAACCGGCTCCCGAAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCCCTAGGGCACACATAGTGAGAAGAGAACCGGCTCCCGAAAGGT  400

seq1  TCCTCAGACCTGCACACTCGTGTGAATACATTCAATTAAGAAAAAGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGACCTGCACACTCGTGTGAATACATTCAATTAAGAAAAAGAGGG  450

seq1  ACTGGAGAGAGAACTCAGCAGTTAACAGCACTGGTTGCTCTTCCAGACGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAGAGAACTCAGCAGTTAACAGCACTGGTTGCTCTTCCAGACGA  500

seq1  CTCAGGTTCAATTCCCAGCATCTGCGTGATAGCTCACAATTGTCAGTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTTCAATTCCCAGCATCTGCGTGATAGCTCACAATTGTCAGTAAC  550

seq1  ACCTGTTCCAGGGGATCCAACACCTTCATACACATACATGCAGGCAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTCCAGGGGATCCAACACCTTCATACACATACATGCAGGCAAAAC  600

seq1  ACTAATGTACATAAAATAAAAATACATTATTAAAAGAAAAGGCTATACCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGTACATAAAATAAAAATACATTATTAAAAGAAAAGGCTATACCG  650

seq1  TAATCACAATACAGAAATGGCAATAAGGGCCTTCCTCAAGTTAGTGAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACAATACAGAAATGGCAATAAGGGCCTTCCTCAAGTTAGTGAGTA  700

seq1  AAGCCCTAGTTTGCAAATGTCATGTCTTCCAAGCTGATGCTAAGATACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTAGTTTGCAAATGTCATGTCTTCCAAGCTGATGCTAAGATACAT  750

seq1  TTACCCAGTCCCACCTCCTGTGGGGCTGGTGGCCCTGGGTTGTTCTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAGTCCCACCTCCTGTGGGGCTGGTGGCCCTGGGTTGTTCTCTCT  800

seq1  ACTGTGTCAGTAGTGGGCCAGTACACCCTCCCTTCTTCCCTCCTTCCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCAGTAGTGGGCCAGTACACCCTCCCTTCTTCCCTCCTTCCCTT  850

seq1  CCTCCCTCCCTCCCTCCCTCCCACCCACC-TTTCCCCTTGACTGTGACTG  899
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTCCCT-CCTCCCTCCCTCCCACCCACCTTTTCCCCTTGACTGTGACTG  899

seq1  CAGAGAAAG-TCTCCATGGTCACTG-TCACTATTTTCCTGATTTAAAAGA  947
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  CAGAGAAAGTTCTCCATGGTCACTGTTCACTATTTTCCTGATTTAAAAGA  949

seq1  AAACCAT--GTTTATCA-CATAATAGTTTGGTTA-TAAGCTGGGAAAGAC  993
      |||||||   ||||||| ||||||  || ||||| ||||||||||| |||
seq2  AAACCATTGTTTTATCACCATAATGTTTGGGTTATTAAGCTGGGAACGAC  999

seq1  AGAGGTGGTA-ACT-AACAGGAAAGCCTTCCCTTGCATGGA--CCAGAGG  1039
      ||  |||||| ||| |||||| |||||||| ||||||| ||   ||  | 
seq2  AGGAGTGGTATACTAAACAGGGAAGCCTTCTCTTGCATTGAACTCAAGGA  1049

seq1  ATG-CTTTCCAGGGTCTTCACAGGGT  1064
      ||| |||||||||||| |||||||||
seq2  ATGCCTTTCCAGGGTC-TCACAGGGT  1074

seq1: chr13_95493778_95494871
seq2: B6Ng01-318J23.g_66_1169 (reverse)

seq1  CTCACACT--CA-CAGTGGGTTG--ATGTCACA---CCCAGTTCC-TACT  41
      ||||||||  || ||||||| ||  ||||||||   || |||||| ||||
seq2  CTCACACTTCCACCAGTGGGGTGGAATGTCACAACCCCAAGTTCCTTACT  50

seq1  GAGGGCTTGGTGATCTTGCCCTCTACGG-ATGTGCAGGGAAGGAA-GCAG  89
      ||||  ||||||||| |||||||||||| ||||||| |||||||| ||||
seq2  GAGGCTTTGGTGATC-TGCCCTCTACGGAATGTGCAAGGAAGGAAGGCAG  99

seq1  AGAGTTGGAAGAAGGCCTTAAGTTCTCT-CAACAAATCTGTAAAAACAT-  137
      ||||||||||||||| |||||||||||| || ||||||||| ||||||| 
seq2  AGAGTTGGAAGAAGG-CTTAAGTTCTCTCCACCAAATCTGT-AAAACATC  147

seq1  CCATAGAAGAACTATCAGGAGCAATTGATTATTTGCAATAAT-AAAATTA  186
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  CCATAGAAGAACTATCAGGAGCAA-TGATTATTTGCAATAATAAAAATTA  196

seq1  AGAATGGGTAATTTAAGAAAATGTATTGGGAAAATTCCACCTGAAGTGTG  236
      ||||||||||||||||||||||||||||| ||| ||||||||||||||||
seq2  AGAATGGGTAATTTAAGAAAATGTATTGGAAAATTTCCACCTGAAGTGTG  246

seq1  GCAAGGGGAACTGGGAAGAACGCAGGCAGAAAAACAAGGAAGAGGTCAGA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGGAACTGGGAAGAACGCAGGCAGAAAAACAAGGAAGAGGTCAGA  296

seq1  GCAAGAAATGACTTCTCAGATCTTAGGTGGGGGCTGAAAGCTGTAGGCAA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAATGACTTCTCAGATCTTAGGTGGGGGCTGAAAGCTGTAGGCAA  346

seq1  TGCTAGCAGGCATGTTGAACAGAGCAAAATTCAGAAGCTGAGGCAAAAAG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCAGGCATGTTGAACAGAGCAAAATTCAGAAGCTGAGGCAAAAAG  396

seq1  GAGACACTTCCTGTTAGACCTTTCTGGAATGTGCTCCTACAACCTGCTGG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACTTCCTGTTAGACCTTTCTGGAATGTGCTCCTACAACCTGCTGG  446

seq1  GAACTAGGAACCCAGCACAAATGGTCAGAACTCTTGACTAGAAGGGCATT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGGAACCCAGCACAAATGGTCAGAACTCTTGACTAGAAGGGCATT  496

seq1  GTCATTCTCAGCTATAATATTAATTGGAAACTATCCAAAACATTACCTCA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCTCAGCTATAATATTAATTGGAAACTATCCAAAACATTACCTCA  546

seq1  CGTCAGGTCTGCTTCCTTAAGTTTTTCCTTCAGCAGGGACTCAGGTGACT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGGTCTGCTTCCTTAAGTTTTTCCTTCAGCAGGGACTCAGGTGACT  596

seq1  TTCTAAGCCTATAACATATCTTAGTATCAAGATCAATACTGAATTAGCAG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGCCTATAACATATCTTAGTATCAAGATCAATACTGAATTAGCAG  646

seq1  ACATGGCTAAGGATAACTGGGGGGAAATAATTAACAAAATTAAGGAGGAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTAAGGATAACTGGGGGGAAATAATTAACAAAATTAAGGAGGAT  696

seq1  TTGCACCACTGGGAGCCATAAAAGTTATTTTATGGGTCCATGTAAATGTA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCACTGGGAGCCATAAAAGTTATTTTATGGGTCCATGTAAATGTA  746

seq1  ATAAAACCTCTGTCTGTGCCACATTTAATTTCACATCAAAAAGGTCCCCG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCTCTGTCTGTGCCACATTTAATTTCACATCAAAAAGGTCCCCG  796

seq1  CAGATGGCCTGCAAGATTATTTCACTAGAATTGAATCTGTCTCGGCTTTT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGCCTGCAAGATTATTTCACTAGAATTGAATCTGTCTCGGCTTTT  846

seq1  TCTGAGTGAGAAAACTCTCTCTCTGCTCAGAAAGTTAAGTTCCCCACAGA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTGAGAAAACTCTCTCTCTGCTCAGAAAGTTAAGTTCCCCACAGA  896

seq1  GAAGGAAATCACGCCCCAGCCAGTCACAGGCAGTGTTTAATGGGAGCTCC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAATCACGCCCCAGCCAGTCACAGGCAGTGTTTAATGGGAGCTCC  946

seq1  TCAAAGTGGGCAATATAATTAATTTTTATTAATAATAACACTTTATAATT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTGGGCAATATAATTAATTTTTATTAATAATAACACTTTATAATT  996

seq1  GGAAGAGGCAGGACATAATAAATCAAAGGCTGCTTCCAAATATGACACAT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGCAGGACATAATAAATCAAAGGCTGCTTCCAAATATGACACAT  1046

seq1  GGTGTTTCAAATAAAATCAAATATTGACAAGAGAGAAGTGCAAAAGGACA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTCAAATAAAATCAAATATTGACAAGAGAGAAGTGCAAAAGGACA  1096

seq1  GTGAATTC  1094
      ||||||||
seq2  GTGAATTC  1104