BAC Information

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BAC

Clone NameB6Ng01-319N13
Chromosome13 (Build37)
Map Location 63,123,371 - 63,234,909
singlet/doubletdoublet
Overlap gene2010111I01Rik
Upstream geneEG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524
Downstream geneFancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319N13.bB6Ng01-319N13.g
ACCGA109375GA109376
length1,159547
definitionB6Ng01-319N13.b B6Ng01-319N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,123,371 - 63,124,477)(63,234,358 - 63,234,909)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatcacttctaaagagcctgactgtttaaaaaacaacaac
aaaaaagaatttccacaagaaaaagaatattcgaggaatctaagtgaagc
gtgccatgttttgctaagtgtgacagacacggtgactgtaaaagggaaag
gagctgtggggtgcagaggaacttcttatttttaaatgaacttaacacat
aaactgcttaaaattaagttgacttaaaacatagctgcaaccttcagaag
aggctgcctttcctggatcccccactacccataagattgcccaggtgctt
tcactaagtgccctggtgcttttactaagtgcccaggtgcgttcactaag
tgccctagtgcttttactaagtgccttttctttttctgagaataaagagt
atagtttattctttttggggagttgtcaactagctcgtcactatatctag
ttctgaaagagagttgctcaaggtagacacccagctctcttgtctcagcc
actcagctgtgcagtcttgaacctaaaatgtcctctctgctgacctggaa
tactcgatcacaggtgaacattccaatggactgatgagaatccttagtac
aatctagtg
cacccaatgcctcaggctgggcctgttttggtcctattcacagacacctc
ctgaaaatctgggggattggtttttccagcaatgctgaggtaaacatttt
ccccactttcacttgggtgaaattcctaatgtggacatattgagtcaaga
acacacattaaaactttatgaatattgcctaactgcccttcaagaagtta
aatcaacttctactcctgcagaaaataagttggaacaccagctttggtta
agtgactgctttactctgagttatattgtgtttttatttggtgggttgag
ttttaagaaagaattgtttagaacacttgataaaataaagccatattttt
gccatgttttataaatatgttaaaatttttcccattggccttgatcattg
ttatggtcaacatcaacaattaacttgagattaagaatcacccggggtgg
gagtgtaggtttgggggttctggacatgcctataggggaattgtcttgat
gagactgactcaaatggaaagacttgccacaatttgggtaccattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_63123371_63124477
seq2: B6Ng01-319N13.b_112_1205

seq1  GCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATA  50

seq1  ATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTG  100

seq1  GAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGG  150

seq1  ATTCGGTTAGCGAGAATTTTATTAAGGATTTTTGCATCGATATTCATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGTTAGCGAGAATTTTATTAAGGATTTTTGCATCGATATTCATAAG  200

seq1  AGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAG  250

seq1  GTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCT  300

seq1  ACTTCTATCTTGTGAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTATCTTGTGAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTT  350

seq1  GAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTT  400

seq1  TGGCTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGGGGATATGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGGGGATATGGGA  450

seq1  CTGTTTAGATGGTCAACTTGATCCTGATTCAACTTTGGTACCTGGTATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAGATGGTCAACTTGATCCTGATTCAACTTTGGTACCTGGTATCA  500

seq1  CTTCTAAAGAGCCTGACTGTTTAAAAAACAACAACAAAAAAGAATTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAAGAGCCTGACTGTTTAAAAAACAACAACAAAAAAGAATTTCCA  550

seq1  CAAGAAAAAGAATATTCGAGGAATCTAAGTGAAGCGTGCCATGTTTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAAGAATATTCGAGGAATCTAAGTGAAGCGTGCCATGTTTTGCT  600

seq1  AAGTGTGACAGACACGGTGACTGTAAAAGGGAAAGGAGCTGTGGGGTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGACAGACACGGTGACTGTAAAAGGGAAAGGAGCTGTGGGGTGCA  650

seq1  GAGGAACTTCTTATTTTTAAATGAACTTAACACATAAACTGCTTAAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACTTCTTATTTTTAAATGAACTTAACACATAAACTGCTTAAAATT  700

seq1  AAGTTGACTTAAAACATAGCTGCAACCTTCAGAAGAGGCTGCCTTTCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGACTTAAAACATAGCTGCAACCTTCAGAAGAGGCTGCCTTTCCTG  750

seq1  GATCCCCCACTACCCATAAGATTGCCCAGGTGCTTTCACTAAGTGCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCCCACTACCCATAAGATTGCCCAGGTGCTTTCACTAAGTGCCCTG  800

seq1  GTGCTTTTACTAAGTGCCCAGGTGCGTTCACTAAGTGCCCTAGTGCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTTACTAAGTGCCCAGGTGCGTTCACTAAGTGCCCTAGTGCTTTT  850

seq1  ACTAAGTGCCTTT--CTTTTCTGAAGAATAAAGAGTATAGTTTATTC-TT  897
      |||||||||||||   ||||||| ||||||||||||||||||||||| ||
seq2  ACTAAGTGCCTTTTCTTTTTCTG-AGAATAAAGAGTATAGTTTATTCTTT  899

seq1  TTGGGGAGTTGTC-ACTAGCTCGTCCACTATTATTCTAGTTCTGAAAGAG  946
      ||||||||||||| |||||||||| ||||||   ||||||||||||||||
seq2  TTGGGGAGTTGTCAACTAGCTCGT-CACTAT--ATCTAGTTCTGAAAGAG  946

seq1  AGTTGCTCAAAGTAGAACACCCAGCTCTC-TGTCTCAGCCACTCAGGGCT  995
      |||||||||| |||| ||||||||||||| ||||||||||||||||    
seq2  AGTTGCTCAAGGTAG-ACACCCAGCTCTCTTGTCTCAGCCACTCAG---C  992

seq1  TGTGCCAGTTCTTGAACCT-AAATGTCCTCTCTTGCCTGAGCCCTGGGAT  1044
      |||| ||| |||||||||| |||||||||||||   ||||  ||||| ||
seq2  TGTG-CAG-TCTTGAACCTAAAATGTCCTCTCT--GCTGA--CCTGGAAT  1036

seq1  ACTCGATCACAGGTG-ACATTTCAAAGTGACTGATGGAGGGAATCCTTAT  1093
      ||||||||||||||| ||||| ||| | |||||||   | ||||||||| 
seq2  ACTCGATCACAGGTGAACATTCCAATG-GACTGAT---GAGAATCCTTA-  1081

seq1  GTAACAATCTAGTG  1107
      || |||||||||||
seq2  GT-ACAATCTAGTG  1094

seq1: chr13_63234358_63234909
seq2: B6Ng01-319N13.g_70_622 (reverse)

seq1  ATAGTGGTACCCAAAGTG-GGCAAGTCTTCCCATTTGAGTCAGTCTCATC  49
      ||| ||||||||||| || |||||||||| ||||||||||||||||||||
seq2  ATAATGGTACCCAAATTGTGGCAAGTCTTTCCATTTGAGTCAGTCTCATC  50

seq1  AAGACAATTCCCCTATAGGCATGTCCAGAACCCCCAAACCTACACTCCCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATTCCCCTATAGGCATGTCCAGAACCCCCAAACCTACACTCCCA  100

seq1  CCCCGGGTGATTCTTAATCTCAAGTTAATTGTTGATGTTGACCATAACAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGGTGATTCTTAATCTCAAGTTAATTGTTGATGTTGACCATAACAA  150

seq1  TGATCAAGGCCAATGGGAAAAATTTTAACATATTTATAAAACATGGCAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGGCCAATGGGAAAAATTTTAACATATTTATAAAACATGGCAAA  200

seq1  AATATGGCTTTATTTTATCAAGTGTTCTAAACAATTCTTTCTTAAAACTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGCTTTATTTTATCAAGTGTTCTAAACAATTCTTTCTTAAAACTC  250

seq1  AACCCACCAAATAAAAACACAATATAACTCAGAGTAAAGCAGTCACTTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACCAAATAAAAACACAATATAACTCAGAGTAAAGCAGTCACTTAA  300

seq1  CCAAAGCTGGTGTTCCAACTTATTTTCTGCAGGAGTAGAAGTTGATTTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTGGTGTTCCAACTTATTTTCTGCAGGAGTAGAAGTTGATTTAA  350

seq1  CTTCTTGAAGGGCAGTTAGGCAATATTCATAAAGTTTTAATGTGTGTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGAAGGGCAGTTAGGCAATATTCATAAAGTTTTAATGTGTGTTCT  400

seq1  TGACTCAATATGTCCACATTAGGAATTTCACCCAAGTGAAAGTGGGGAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAATATGTCCACATTAGGAATTTCACCCAAGTGAAAGTGGGGAAA  450

seq1  ATGTTTACCTCAGCATTGCTGGAAAAACCAATCCCCCAGATTTTCAGGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTACCTCAGCATTGCTGGAAAAACCAATCCCCCAGATTTTCAGGAG  500

seq1  GTGTCTGTGAATAGGACCAAAACAGGCCCAGCCTGAGGCATTGGGTGGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTGAATAGGACCAAAACAGGCCCAGCCTGAGGCATTGGGTGGAA  550

seq1  TTC  552
      |||
seq2  TTC  553