BAC Information

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BAC

Clone NameB6Ng01-320A11
Chromosome13 (Build37)
Map Location 87,187,337 - 87,188,488
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042887, LOC100042893
Downstream geneLOC675707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320A11.bB6Ng01-320A11.g
ACCGA109508GA109509
length1,1571,159
definitionB6Ng01-320A11.b B6Ng01-320A11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgtttttaatagctgagtagtattccattgtgcaaatgtacc
acattttctgtatcagttcctcagttgaaggacatctgggttcttttcag
cttctgactattataaataaggctgctatagtggagaatgtgtccttatt
aaatgttggagcatcttttggtatatactcaggagtggtatacaagggtc
ctcaggtagtaatatgtctaattttctgaggaaccaccaaactgatttct
aaagtgattgtaccagctttcaatcccatcagtaatgggggagtattcct
ctttctccacatcctcaccagcatcttctgtcgcctgagtttttgatctt
agccattctgactagtgttatggtggaatctcagggttgttttgatttgc
atttccttgatgaatctatcaagacttgtaagacatgatgtttattggga
ttgtttacaggaatgtggctgggaaattgcttacagaagaatgggtgttt
aaaaaaaatatgtttgattggaaaccctgattgccacccccccacacaca
cacaagctgggaagcctcctctcctttcctttacttaaccccactagcat
ggcaataactgatgacggtcaagctatcattcattgcctttgtatttcta
gcaacccatccaaaaatgacaatccaggggttctgcatctgatcatatag
gatcacagttccagttcctggcatatacatcatgtctttttacctgaggt
ctataaagcctacctaccttagcctagatgccgaactttcttggcccaat
attttgggactggtgaacccaccccagagcaatgtctactaaacctgcat
ttatctgcttttagtctggtatgatctgacctatcttcgaatcactgaga
aagtggaaaagcccattaaaaggaatctacaaaaaacccacaacatagac
aatgattcatgaaatctgcacgatttagctttctgcaaacctcaggaagc
ttctcatgtcataggattgcttctgcttctactttctttgattacttgga
gattctttcttgagagtaacttatttcttttccaataaaatttgaaaaaa
aggcctggtgtctacttgctagttttggggactttcttatcctgcctagt
tgtttac

gaattctcacctgaggaataacgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccagaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactacgcccctccttagatttgggga
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggatcatgtagagactgccatatccagcgatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggccctagcaac
acagaagtggatgctcacagtcagctaatgggatgggatcatagggctcc
caaatggaggagctagagaaagtagacaaggagctaaaggatctgcacca
tataggtggacacatatgaactaacagtaccccggagctcttgactctag
ctgcatatatatcaaagatgctaggtcggcatcactgaaagaggagtcta
ttgacttgcactttatatgccccatacagggtaacactcatggtccaaaa
atggggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_87187337_87188488
seq2: B6Ng01-320A11.b_44_1200

seq1  GAATTCATTGTTTTTAATAGCTGAGTAGTATTCCATTGTGCAAATGTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTTTTAATAGCTGAGTAGTATTCCATTGTGCAAATGTACC  50

seq1  ACATTTTCTGTATCAGTTCCTCAGTTGAAGGACATCTGGGTTCTTTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTGTATCAGTTCCTCAGTTGAAGGACATCTGGGTTCTTTTCAG  100

seq1  CTTCTGACTATTATAAATAAGGCTGCTATAGTGGAGAATGTGTCCTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGACTATTATAAATAAGGCTGCTATAGTGGAGAATGTGTCCTTATT  150

seq1  AAATGTTGGAGCATCTTTTGGTATATACTCAGGAGTGGTATACAAGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGGAGCATCTTTTGGTATATACTCAGGAGTGGTATACAAGGGTC  200

seq1  CTCAGGTAGTAATATGTCTAATTTTCTGAGGAACCACCAAACTGATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTAGTAATATGTCTAATTTTCTGAGGAACCACCAAACTGATTTCT  250

seq1  AAAGTGATTGTACCAGCTTTCAATCCCATCAGTAATGGGGGAGTATTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGATTGTACCAGCTTTCAATCCCATCAGTAATGGGGGAGTATTCCT  300

seq1  CTTTCTCCACATCCTCACCAGCATCTTCTGTCGCCTGAGTTTTTGATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCACATCCTCACCAGCATCTTCTGTCGCCTGAGTTTTTGATCTT  350

seq1  AGCCATTCTGACTAGTGTTATGGTGGAATCTCAGGGTTGTTTTGATTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTCTGACTAGTGTTATGGTGGAATCTCAGGGTTGTTTTGATTTGC  400

seq1  ATTTCCTTGATGAATCTATCAAGACTTGTAAGACATGATGTTTATTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTGATGAATCTATCAAGACTTGTAAGACATGATGTTTATTGGGA  450

seq1  TTGTTTACAGGAATGTGGCTGGGAAATTGCTTACAGAAGAATGGGTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTACAGGAATGTGGCTGGGAAATTGCTTACAGAAGAATGGGTGTTT  500

seq1  AAAAAAAATATGTTTGATTGGAAACCCTGATTGCCACCCCCCCACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATATGTTTGATTGGAAACCCTGATTGCCACCCCCCCACACACA  550

seq1  CACAAGCTGGGAAGCCTCCTCTCCTTTCCTTTACTTAACCCCACTAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTGGGAAGCCTCCTCTCCTTTCCTTTACTTAACCCCACTAGCAT  600

seq1  GGCAATAACTGATGACGGTCAAGCTATCATTCATTGCCTTTGTATTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAACTGATGACGGTCAAGCTATCATTCATTGCCTTTGTATTTCTA  650

seq1  GCAACCCATCCAAAAATGACAATCCAGGGGTTCTGCATCTGATCATATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCATCCAAAAATGACAATCCAGGGGTTCTGCATCTGATCATATAG  700

seq1  GATCACAGTTCCAGTTCCTGGCATATACATCATGTCTTTTTACCTGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACAGTTCCAGTTCCTGGCATATACATCATGTCTTTTTACCTGAGGT  750

seq1  CTATAAAGCCTACCTACCTTAGCCTAGATGCCGAACTTTCTTGGCCCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAGCCTACCTACCTTAGCCTAGATGCCGAACTTTCTTGGCCCAAT  800

seq1  ATTTTGGGACTGGTGAACCCACCCCAGAGCAATGTCTACTAAACCTGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGGACTGGTGAACCCACCCCAGAGCAATGTCTACTAAACCTGCAT  850

seq1  TTATCTGCTTTTAGTCTGGTATGATCTGACCTATCTTCGAATCACTGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGCTTTTAGTCTGGTATGATCTGACCTATCTTCGAATCACTGAGA  900

seq1  AAGTGGAAAAGCCCATTAAAAGGAATCTACAAAAAACCCACAACATAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAAAAGCCCATTAAAAGGAATCTACAAAAAACCCACAACATAGAC  950

seq1  AATGATTCATGAAATCTGCAACGATTTAGCTTTCTGCAAACCTCAGGGAA  1000
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  AATGATTCATGAAATCTGC-ACGATTTAGCTTTCTGCAAACCTCA-GGAA  998

seq1  GCTTCTCATGTCATAGGATTGCTTCTGCTTCTACTTTCTTTGATTACTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCATGTCATAGGATTGCTTCTGCTTCTACTTTCTTTGATTACTTG  1048

seq1  GAGATTC-TTCTTGAGAAGTAACTTA-TTCTTT--CCATAAA--TTG-AA  1093
      ||||||| |||||||| ||||||||| ||||||  | |||||  ||| ||
seq2  GAGATTCTTTCTTGAG-AGTAACTTATTTCTTTTCCAATAAAATTTGAAA  1097

seq1  AAAAGGCCCTGTGTCTACTTTGCTAGTTTTGGGAAC-TTCTTATCCTG-C  1141
      ||||||||  |||||||| |||||||||||||| || ||||||||||| |
seq2  AAAAGGCCTGGTGTCTAC-TTGCTAGTTTTGGGGACTTTCTTATCCTGCC  1146

seq1  TAGTTGTTTAC  1152
      |||||||||||
seq2  TAGTTGTTTAC  1157


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