BAC Information

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BAC

Clone NameB6Ng01-321I05
Chromosome13 (Build37)
Map Location 25,068,851 - 25,253,294
singlet/doubletdoublet
Overlap geneGpld1, Mrs2l, LOC675430, Dcdc2a
Upstream geneScgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1
Downstream geneNrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321I05.bB6Ng01-321I05.g
ACCGA110596GA110597
length1,1251,161
definitionB6Ng01-321I05.b B6Ng01-321I05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,068,851 - 25,069,972)(25,252,119 - 25,253,294)
sequence
gaattcactatgtagccccatgttggccttgaacttctaaatgcctgttc
ttcctagggctggggttgttaatgtaaaaagctgtagtttcttgatgtca
cagtgccgtggtaaagacagaattcctaatgctcttcaccatcccccacc
cctacccgtgtaatcgtcttcggtagttacagagtaatcataaagtaaaa
agctgccgtgggcctggctctgagctccaggctctgcttgcatttcattg
ctttgcttcaagaagtttttcttcaggagggaaaacctagccactgctga
tgtttattacagaatcagagggttcatcttgggaacacttagggccctgg
atggcattacacaaacacagaaggcatttgccatcttagtagcaaggagg
gacagcaagccttactgctagttacagaagaggctttggtggcattggcc
tggccctgaatctctgagtgtcaagtgcttgggattagcaacctagattg
gggggttcaatagtggctctctgactgggtaaattacttctccgttgcta
gttattcatgctgtggggagaaaagacgtcatcacacctgtctgtgaaga
caaattaaaagtgcacggggtttgtgatctagtttaggctctggtgaaag
ctgtcctggccctgccatgtggaagtgagtcacctgcccagggtatgggg
tcaccctgtaaaggttgttccatcttatggagtcttctgacatcacatga
aatatctccaagctaagttaagatgacctgtctctcctactgctgcgcag
tcattgctgttaaaccagcaggtaacgtctaaaattctgggcagtggctt
cctgcttgataaactctctcaaagtccacatgggagaggaggcgatggct
ccacagtgccctcctccccatgcgacctttggtagcttgggatgatggcc
agaagagggcatgacctagactttggaagcctgtggccagccctgtgtca
tcatgagcctccccatgtccttggctacaatgggggattaggatgctgtt
caaaattactttgtgctttgttggtgaggctgactctccggagccaggaa
tagcctgcctggagattgaactcag
gaattctggggagcagggaggatgaagtgagatcacttgtggggttcctt
aagggaagaacagagattgtgagacacttccagaccagaccaggtcagag
ccacaaccacaaggcccatctgcttgaagctgtcattctctagagagttc
tgtcatttttttatgctagctcctgggctgacacagtagctgccaggaaa
gcaaggaacagaataggtgcttgttgcaagtgacatcttggctgatctga
ccctgtttaaccaggtggggaaactgggacagaaacttcaccatggcttg
caaagtcctcaggggcagtaccccactcctgccagctctcccccagatga
gcccaccctgtgtttctgccttattcaaggtccttcacgtgtcctactga
acacacacacacacacacactctcatcgtacagctagccatatggactct
aaagaaatggagctaatgaatgaaaatgggttcagaacctctgtaattag
gtgaaaatcagggtgcccaagtcccaggggcaaaaggttgctatctacag
ttgaaaaaagatgcctgtggccagcttggagaaatttacacattggcatc
ttaaaaatgcaggcagtttttacagaattaattggagatttttagcagca
ggtggcagggtttctttttagtttgtaaaggaaagtctaacagttgtcaa
atggcctgggtagaagtggattattttgatttttttttcccaagctctct
gaaatgaagcttttaatgcctgccgtgtaatggccttctttttccatgta
aatgtgggatcaatctagttttaaacagaaagatttttctaatgtacctt
tggtatttttcaagctgtgatacagctgataggagtgcttataaaatgta
aattgcaaaaaattcatattttataagcttttccgtgtatttcaggatgc
tgacttttaacattctatgatgatctagagagctgcactctgcactgact
aagcatccatgcccaccaggctggggtctggtggagtcactacatcttga
gtctgtggctgggaagaaacgtgttgctgaaaagaaaggagttcttgggt
tctgggagacagctgaattcctctagatgcaggtgcatgcatacttcctg
ggcaatcaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_25068851_25069972
seq2: B6Ng01-321I05.b_46_1170

seq1  GAATTCACTATGTAGCCCCATGTTGGCCTTGAACTTCTAAATGCCTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGCCCCATGTTGGCCTTGAACTTCTAAATGCCTGTTC  50

seq1  TTCCTAGGGCTGGGGTTGTTAATGTAAAAAGCTGTAGTTTCTTGATGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGGGCTGGGGTTGTTAATGTAAAAAGCTGTAGTTTCTTGATGTCA  100

seq1  CAGTGCCGTGGTAAAGACAGAATTCCTAATGCTCTTCACCATCCCCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCGTGGTAAAGACAGAATTCCTAATGCTCTTCACCATCCCCCACC  150

seq1  CCTACCCGTGTAATCGTCTTCGGTAGTTACAGAGTAATCATAAAGTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCGTGTAATCGTCTTCGGTAGTTACAGAGTAATCATAAAGTAAAA  200

seq1  AGCTGCCGTGGGCCTGGCTCTGAGCTCCAGGCTCTGCTTGCATTTCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCGTGGGCCTGGCTCTGAGCTCCAGGCTCTGCTTGCATTTCATTG  250

seq1  CTTTGCTTCAAGAAGTTTTTCTTCAGGAGGGAAAACCTAGCCACTGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTCAAGAAGTTTTTCTTCAGGAGGGAAAACCTAGCCACTGCTGA  300

seq1  TGTTTATTACAGAATCAGAGGGTTCATCTTGGGAACACTTAGGGCCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTACAGAATCAGAGGGTTCATCTTGGGAACACTTAGGGCCCTGG  350

seq1  ATGGCATTACACAAACACAGAAGGCATTTGCCATCTTAGTAGCAAGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATTACACAAACACAGAAGGCATTTGCCATCTTAGTAGCAAGGAGG  400

seq1  GACAGCAAGCCTTACTGCTAGTTACAGAAGAGGCTTTGGTGGCATTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAAGCCTTACTGCTAGTTACAGAAGAGGCTTTGGTGGCATTGGCC  450

seq1  TGGCCCTGAATCTCTGAGTGTCAAGTGCTTGGGATTAGCAACCTAGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGAATCTCTGAGTGTCAAGTGCTTGGGATTAGCAACCTAGATTG  500

seq1  GGGGGTTCAATAGTGGCTCTCTGACTGGGTAAATTACTTCTCCGTTGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTCAATAGTGGCTCTCTGACTGGGTAAATTACTTCTCCGTTGCTA  550

seq1  GTTATTCATGCTGTGGGGAGAAAAGACGTCATCACACCTGTCTGTGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCATGCTGTGGGGAGAAAAGACGTCATCACACCTGTCTGTGAAGA  600

seq1  CAAATTAAAAGTGCACGGGGTTTGTGATCTAGTTTAGGCTCTGGTGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAAAAGTGCACGGGGTTTGTGATCTAGTTTAGGCTCTGGTGAAAG  650

seq1  CTGTCCTGGCCCTGCCATGTGGAAGTGAGTCACCTGCCCAGGGTATGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGCCCTGCCATGTGGAAGTGAGTCACCTGCCCAGGGTATGGGG  700

seq1  TCACCCTGTAAAGGTTGTTCCATCTTATGGAGTCTTCTGACATCACATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTGTAAAGGTTGTTCCATCTTATGGAGTCTTCTGACATCACATGA  750

seq1  AATATCTCCAAGCTAAGTTAAGATGACCTGTCTCTCCTACTGCTGCGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTCCAAGCTAAGTTAAGATGACCTGTCTCTCCTACTGCTGCGCAG  800

seq1  TCATTGCTGTTAAACCAGCAGGTAACGTCTAAAATTCTGGGCAGTGGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTGTTAAACCAGCAGGTAACGTCTAAAATTCTGGGCAGTGGCTT  850

seq1  CCTGCTTGATAAACTCTCTCAAAGTCCACATGGGAGAGGAGGCGATGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTGATAAACTCTCTCAAAGTCCACATGGGAGAGGAGGCGATGGCT  900

seq1  CCACAGTGCCCTCCTCCCCATGCGACCTTTGGTAGCTT-GGATGATGGCC  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCACAGTGCCCTCCTCCCCATGCGACCTTTGGTAGCTTGGGATGATGGCC  950

seq1  AGAAGAGGGCATGACCTAGACTTTGGAAGCCTGTGGCCAGCCCTGTGTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGGCATGACCTAGACTTTGGAAGCCTGTGGCCAGCCCTGTGTCA  1000

seq1  TCATGAGCCTCCCCATGTCCTTGGCTACCATGGGGGATTAGGATTGCTGT  1049
      |||||||||||||||||||||||||||| |||||||||||||| ||||| 
seq2  TCATGAGCCTCCCCATGTCCTTGGCTACAATGGGGGATTAGGA-TGCTG-  1048

seq1  TTCAAAATTACTTTGTGCTTTGTT-GTGAGGCTGACTCTCCGGAGGCCCA  1098
      |||||||||||||||||||||||| ||||||||||||||||||||  |||
seq2  TTCAAAATTACTTTGTGCTTTGTTGGTGAGGCTGACTCTCCGGAG--CCA  1096

seq1  GG-ATAG-CTG-CTGGAGAT--GACTCAG  1122
      || |||| ||| ||||||||   ||||||
seq2  GGAATAGCCTGCCTGGAGATTGAACTCAG  1125

seq1: chr13_25252119_25253294
seq2: B6Ng01-321I05.g_65_1225 (reverse)

seq1  GCCTGAAATTGCCCAAGAAGATAGCATGCACACTGCATCTAAGAGGAAAT  50
      |||||  |||||||| ||||   |||||||| |||||||| ||||||| |
seq2  GCCTG--ATTGCCCAGGAAGTATGCATGCAC-CTGCATCT-AGAGGAATT  46

seq1  CAGCTGTTCTCCCAGAGACCCAAG-ACTCCTCTCCTTTTCAGCAACACCG  99
      |||||| ||||||||| ||||||| |||||| | ||||||||||||| ||
seq2  CAGCTG-TCTCCCAGA-ACCCAAGAACTCCT-TTCTTTTCAGCAACA-CG  92

seq1  TCTCTTCCCAGCCCACAGACTCAAGATGTAGTGACTCCACCAGACCCCAG  149
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCCAG-CCACAGACTCAAGATGTAGTGACTCCACCAGACCCCAG  141

seq1  CCTGGGTGGGCATGGGATGCTTAAGTCAGTGCAGAGTGCAGCTCTCCTAG  199
      ||| ||||||||| |||||||| |||||||||||||||||||||| ||||
seq2  CCT-GGTGGGCAT-GGATGCTT-AGTCAGTGCAGAGTGCAGCTCT-CTAG  187

seq1  ATCATCATTAGAAATGTTTAAAAGTCAGCATCCTGAAATTACACGGAAAA  249
      ||||||| ||| |||| ||||||||||||||||||||| |||||||||||
seq2  ATCATCA-TAG-AATG-TTAAAAGTCAGCATCCTGAAA-TACACGGAAAA  233

seq1  GCTTAT-AAATATGAATTTTTTGCAATTTACATTTTATAAGCACTCCTAT  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATAAAATATGAATTTTTTGCAATTTACATTTTATAAGCACTCCTAT  283

seq1  CAGCTGTATCACAGCTTGAAAAATACCAAAGGTACATTAGAAAAATCTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTATCACAGCTTGAAAAATACCAAAGGTACATTAGAAAAATCTTT  333

seq1  CTGTTTAAAACTAGATTGATCCCACATTTACATGGAAAAAGAAGGCCATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAAAACTAGATTGATCCCACATTTACATGGAAAAAGAAGGCCATT  383

seq1  ACACGGCAGGCATTAAAAGCTTCATTTCAGAGAGCTTGGGAAAAAAAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGCAGGCATTAAAAGCTTCATTTCAGAGAGCTTGGGAAAAAAAAAT  433

seq1  CAAAATAATCCACTTCTACCCAGGCCATTTGACAACTGTTAGACTTTCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATCCACTTCTACCCAGGCCATTTGACAACTGTTAGACTTTCCT  483

seq1  TTACAAACTAAAAAGAAACCCTGCCACCTGCTGCTAAAAATCTCCAATTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAACTAAAAAGAAACCCTGCCACCTGCTGCTAAAAATCTCCAATTA  533

seq1  ATTCTGTAAAAACTGCCTGCATTTTTAAGATGCCAATGTGTAAATTTCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTAAAAACTGCCTGCATTTTTAAGATGCCAATGTGTAAATTTCTC  583

seq1  CAAGCTGGCCACAGGCATCTTTTTTCAACTGTAGATAGCAACCTTTTGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGGCCACAGGCATCTTTTTTCAACTGTAGATAGCAACCTTTTGCC  633

seq1  CCTGGGACTTGGGCACCCTGATTTTCACCTAATTACAGAGGTTCTGAACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGACTTGGGCACCCTGATTTTCACCTAATTACAGAGGTTCTGAACC  683

seq1  CATTTTCATTCATTAGCTCCATTTCTTTAGAGTCCATATGGCTAGCTGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCATTCATTAGCTCCATTTCTTTAGAGTCCATATGGCTAGCTGTA  733

seq1  CGATGAGAGTGTGTGTGTGTGTGTGTGTTCAGTAGGACACGTGAAGGACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGAGAGTGTGTGTGTGTGTGTGTGTTCAGTAGGACACGTGAAGGACC  783

seq1  TTGAATAAGGCAGAAACACAGGGTGGGCTCATCTGGGGGAGAGCTGGCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAGGCAGAAACACAGGGTGGGCTCATCTGGGGGAGAGCTGGCAG  833

seq1  GAGTGGGGTACTGCCCCTGAGGACTTTGCAAGCCATGGTGAAGTTTCTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGGTACTGCCCCTGAGGACTTTGCAAGCCATGGTGAAGTTTCTGT  883

seq1  CCCAGTTTCCCCACCTGGTTAAACAGGGTCAGATCAGCCAAGATGTCACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTTCCCCACCTGGTTAAACAGGGTCAGATCAGCCAAGATGTCACT  933

seq1  TGCAACAAGCACCTATTCTGTTCCTTGCTTTCCTGGCAGCTACTGTGTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAAGCACCTATTCTGTTCCTTGCTTTCCTGGCAGCTACTGTGTCA  983

seq1  GCCCAGGAGCTAGCATAAAAAAATGACAGAACTCTCTAGAGAATGACAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGAGCTAGCATAAAAAAATGACAGAACTCTCTAGAGAATGACAGC  1033

seq1  TTCAAGCAGATGGGCCTTGTGGTTGTGGCTCTGACCTGGTCTGGTCTGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCAGATGGGCCTTGTGGTTGTGGCTCTGACCTGGTCTGGTCTGGA  1083

seq1  AGTGTCTCACAATCTCTGTTCTTCCCTTAAGGAACCCCACAAGTGATCTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTCACAATCTCTGTTCTTCCCTTAAGGAACCCCACAAGTGATCTC  1133

seq1  ACTTCATCCTCCCTGCTCCCCAGAATTC  1176
      ||||||||||||||||||||||||||||
seq2  ACTTCATCCTCCCTGCTCCCCAGAATTC  1161