BAC Information

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BAC

Clone NameB6Ng01-321L24
Chromosome13 (Build37)
Map Location 22,682,105 - 22,683,201
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494
Downstream geneV1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321L24.bB6Ng01-321L24.g
ACCGA110775GA110776
length1,0951,183
definitionB6Ng01-321L24.b B6Ng01-321L24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtcaatagaagccaaatgtactagtcacagaacttgaatggcc
cggatcacttcattggcattatatttgtgaaaattctttgcagttataaa
gactagatatatgaaataaattagataacaaatacacagtacagtcttac
attatactcaactgtagttactatgttgatttaaaagtgtgcatttgtct
ttttcaaaataagtcaatgactacaattaaggccaagcaagcatgctttg
tagctgccctttgttactgctcaggtgctctccatagctccgtgcagctc
tgtagcaccaaggagcactgagaggatctgactctacatatatttaaatg
aaaatttgctgcttatgtacttaaattggatacatacagtaagatagtga
catgtttctaagaatctgatggacacattctgaaaaatacttatagttat
aaatattgactgtgaaatggttgaatgattagaggtatgttttaccttat
ttgaaacaatttttctgtcacttttgactggaaacactagaagtttcatg
gctctactttacaatgatgagcacaatttataatttgcttggtggcacta
tatacacaaatcaattcaagtaactggtgtgtactgtattgtgctacaga
ttattaaatagcttattttctaattatatttatatgtatgtgtctgtgtg
agtatatgtcacatttgtgtccttacaggcctgaggagagcatttggtct
ccaggaactagagctacaagctgtcatgcatcctatgatgtgggtgtagg
gtaaaggaaccagagtcctctgcaagacaagcaagtctcatcatcattcc
cacatgaccttgtctgatgtaaatgtgacttgtccctaggtaacatccac
tgcttctctttgtctcataactcttctgttagaccttttcttctagtacc
tgtcacaaggaccagacacagacaaaccaagcacctgctaaatcagtcta
tataagttgattcacagaagtgatgtaaaaacatggagatggagttgaga
aagatgtgtttaatctgagtgatggaaaagttgttcagcatagga
gaattctcatctgaggaataccaaagggctgagaagcacgtgcaaaaatg
ttcaacatccttaatcatcagggaaatgcaaaataaaacaaccttgaggt
tccacctcacaccaatcagaatggctaggatcaaaaattcatgtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaagcttgtacaaccactgtggaattcagtctggtggttcctca
gaaaagtgggcatagtactaccggtagatccagcaatacctctcctgggt
atatacccagaagatgttccaacatgtaataaggacacatgctccactat
gttcatagcagccctatttataatagccagaagctggaaagaacccagat
gtccctcaacaaaggaatgggtacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaacaatggatttatgaaattcttgggcaa
atggatgtatctgaaggatataatcctgagtgaggtaacccaatcacaaa
ataagtcacttgatatgcactcagtgatcagtggatattgatccagaaac
ctagaatatccaagatacaacttccaaaacacaagaaaatcaagaaggaa
gaccaactcgtggatacttacttaattcctccctagaatagggaataaaa
tatccagggaaggagttgcaaagagaaagtttggagctaagatgaaaaga
cagaccatccagaaactgccccacatggtggtccatcccataatcagcca
ccaaacacagacactattgcataatgccagaaagattttgctgaaaggac
cctgatatagctgtctcctgtgaggcttttccagtgcctggcaaatacag
aagtggatgctcacagtcataggatggaacacagggcctccaatttagga
gctagagaagtacccaagagctgaacggtctgcaacccttatagtgacac
agtataaactaaccagtaccacccagacttcatgtcctctagttgcatat
tgtagcagaagatgcgtagtttgccatcatggtaagaagccccttgtcta
gccaactttatagctacagttacagggtataggccagggttcaagacttg
ggactgtagactggggtacgatgtgcatcctcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22682105_22683201
seq2: B6Ng01-321L24.b_47_1141 (reverse)

seq1  TCCTAATGCTGAACAACCTCTCCATCACTCAGATTAAACACATCTTTCTT  50
      |||| |||||||||||| | ||||||||||||||||||||||||||||| 
seq2  TCCT-ATGCTGAACAACTTTTCCATCACTCAGATTAAACACATCTTTCTC  49

seq1  CACTCATTCTCCATGTTTTTACATCACTTCTTGTGAATCAACTTATATAG  100
       ||||  ||||||||||||||||||||||| |||||||||||||||||||
seq2  AACTCCATCTCCATGTTTTTACATCACTTC-TGTGAATCAACTTATATAG  98

seq1  ACTGATTTAGAAGGTGCTTGGTTTGTCTGTGTCTGGTCCTTTGTGACAGG  150
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  ACTGATTTAGCAGGTGCTTGGTTTGTCTGTGTCTGGTCC-TTGTGACAGG  147

seq1  TACTAGAAGAAAAGGTCTAACAGAAGAGTTATGAGACAAAGAGAAGCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGAAGAAAAGGTCTAACAGAAGAGTTATGAGACAAAGAGAAGCAGT  197

seq1  GGATGTTACCTAGGGACAAGTCACATTTACATCAGACAAGGTCATGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTACCTAGGGACAAGTCACATTTACATCAGACAAGGTCATGTGGG  247

seq1  AATGATGATGAGACTTGCTTGTCTTGCAGAGGACTCTGGTTCC-TTACCC  299
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATGATGATGAGACTTGCTTGTCTTGCAGAGGACTCTGGTTCCTTTACCC  297

seq1  TACACCCACATCATAGGATGCATGACAGCTTGTAGCTCTAGTTCCTGGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCACATCATAGGATGCATGACAGCTTGTAGCTCTAGTTCCTGGAG  347

seq1  ACCAAATGCTCTCCTCAGGCCTGTAAGGACACAAATGTGACATATACTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATGCTCTCCTCAGGCCTGTAAGGACACAAATGTGACATATACTCA  397

seq1  CACAGACACATACATATAAATATAATTAGAAAATAAGCTATTTAATAATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACACATACATATAAATATAATTAGAAAATAAGCTATTTAATAATC  447

seq1  TGTAGCACAATACAGTACACACCAGTTACTTGAATTGATTTGTGTATATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCACAATACAGTACACACCAGTTACTTGAATTGATTTGTGTATATA  497

seq1  GTGCCACCAAGCAAATTATAAATTGTGCTCATCATTGTAAAGTAGAGCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACCAAGCAAATTATAAATTGTGCTCATCATTGTAAAGTAGAGCCA  547

seq1  TGAAACTTCTAGTGTTTCCAGTCAAAAGTGACAGAAAAATTGTTTCAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTCTAGTGTTTCCAGTCAAAAGTGACAGAAAAATTGTTTCAAAT  597

seq1  AAGGTAAAACATACCTCTAATCATTCAACCATTTCACAGTCAATATTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAAACATACCTCTAATCATTCAACCATTTCACAGTCAATATTTAT  647

seq1  AACTATAAGTATTTTTCAGAATGTGTCCATCAGATTCTTAGAAACATGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAAGTATTTTTCAGAATGTGTCCATCAGATTCTTAGAAACATGTC  697

seq1  ACTATCTTACTGTATGTATCCAATTTAAGTACATAAGCAGCAAATTTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTTACTGTATGTATCCAATTTAAGTACATAAGCAGCAAATTTTCA  747

seq1  TTTAAATATATGTAGAGTCAGATCCTCTCAGTGCTCCTTGGTGCTACAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATATGTAGAGTCAGATCCTCTCAGTGCTCCTTGGTGCTACAGA  797

seq1  GCTGCACGGAGCTATGGAGAGCACCTGAGCAGTAACAAAGGGCAGCTACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACGGAGCTATGGAGAGCACCTGAGCAGTAACAAAGGGCAGCTACA  847

seq1  AAGCATGCTTGCTTGGCCTTAATTGTAGTCATTGACTTATTTTGAAAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGCTTGCTTGGCCTTAATTGTAGTCATTGACTTATTTTGAAAAAG  897

seq1  ACAAATGCACACTTTTAAATCAACATAGTAACTACAGTTGAGTATAATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCACACTTTTAAATCAACATAGTAACTACAGTTGAGTATAATGT  947

seq1  AAGACTGTACTGTGTATTTGTTATCTAATTTATTTCATATATCTAGTCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGTACTGTGTATTTGTTATCTAATTTATTTCATATATCTAGTCTT  997

seq1  TATAACTGCAAAGAATTTTCACAAATATAATGCCAATGAAGTGATCCGGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGCAAAGAATTTTCACAAATATAATGCCAATGAAGTGATCCGGG  1047

seq1  CCATTCAAGTTCTGTGACTAGTACATTTGGCTTCTATTGACTGAATTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAAGTTCTGTGACTAGTACATTTGGCTTCTATTGACTGAATTC  1095