BAC Information

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BAC

Clone NameB6Ng01-323K12
Chromosome13 (Build37)
Map Location 63,000,005 - 63,160,527
singlet/doubletdoublet
Overlap geneLOC100042090, EG665524, 2010111I01Rik
Upstream geneEG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1
Downstream geneFancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323K12.bB6Ng01-323K12.g
ACCGA112179GA112180
length6671,129
definitionB6Ng01-323K12.b B6Ng01-323K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,000,005 - 63,000,671)(63,159,381 - 63,160,527)
sequence
gaattcttgggatgatgttatgtggctgaactacaagagagggcctctta
ggttgactttcaccatcaggggtgcactcatcccacaatgtaggatggaa
aatggggggtgacaggagaccagtgggtgctcggtccaagaacctataag
ccccatatcaagaggagctaatagtgcagcccaaggaactaggaacttct
ggacagccactgatacaagtctactttcaatgctgaggaatgatattcat
aggtgataatgagacacacatttatctgtgtttgcatcactctatccaca
acagctacaacatggaatcagcctagatatccatcactgcatgaaagtgg
atgatggttaatgaaaatatggtgcctattcacaatggggttttatttaa
ctgtaaaaaacctaaaatctccagataaataaatggatatggaaactatt
atactgactgaggtaacccaaacccagaaaggaaaatgccacatgtcctc
atatttggatccagatggcaaatctttagattcgtattttaagttgaagt
gcctgtggagtccaggaaactagaaagtggtcatttgtagatagaggaag
aaaggccttagggataggtgaacacaggtaatatgaagggaatggggtaa
taaatagtggggtttaa
gaattcctccaaaacaaggcagagaaagaaagtaggagagtactgtcagt
ttacaactgagggtattgcaccaaaagggaacatgatactccagacagaa
aagacacaaaatacctgagacacagagtaagacattcatatcaagagtac
tatgaaactgaagcaggagaataaagacaagattctatattttcagatac
acagagcttaaaaacatctacctcttacacacccatattccttggaagct
actagaccacagaaatatgcttcaaaaagaggctagagagaaatgagaat
gcctgcagaccacacacccacagaagtcaactaaggacccagagagaatc
cctcaggaaaccaggagaccaagaagagtccagggctgataaatacacag
aaatacaagaaaatagagtggggagacaccaaagcaccattattaactcc
aagtagaaggaacacaaagaaatgttacagccatagcttttctacaagcc
tctggttcttcatgaatacaaacttgaagtattgatacaaatcatataat
gtgacctacaaagagaacaaaggacatcggaaaggcccagttctgcataa
caagcaccttatcaagaattcaaggcaggaaacaccaagtagccaggtaa
gagttagaagtagctatttccaatttgcaaaacataagaaaatcaagaag
agggaagaccaatgggtggatacttcattcctccttagaatagggaacaa
aataccaatgaaaggagttaaagagacaaagttaggagctaagacgaaag
gatggactatccagagaatatcccacccagggatccattccataagcagc
caccaaacccagacactattaattacatatgccagaaagattttgctgaa
agggaccctgttgtagctgtctcgtatgaggctatgccagtgcctggcaa
atacagaagtgatgctcacagtcatctataagatggacacagggccctaa
tgagagctagagaaagtaccaaggagctgagggtctgcacctatagtgaa
caacatatgactacagtacccagaggtcgatctctagtggcattgttagc
cgaagatggcctagtcggcatcactggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_63000005_63000671
seq2: B6Ng01-323K12.b_49_715

seq1  GAATTCTTGGGATGATGTTATGTGGCTGAACTACAAGAGAGGGCCTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGATGATGTTATGTGGCTGAACTACAAGAGAGGGCCTCTTA  50

seq1  GGTTGACTTTCACCATCAGGGGTGCACTCATCCCACAATGTAGGATGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGACTTTCACCATCAGGGGTGCACTCATCCCACAATGTAGGATGGAA  100

seq1  AATGGGGGGTGACAGGAGACCAGTGGGTGCTCGGTCCAAGAACCTATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGGGTGACAGGAGACCAGTGGGTGCTCGGTCCAAGAACCTATAAG  150

seq1  CCCCATATCAAGAGGAGCTAATAGTGCAGCCCAAGGAACTAGGAACTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATATCAAGAGGAGCTAATAGTGCAGCCCAAGGAACTAGGAACTTCT  200

seq1  GGACAGCCACTGATACAAGTCTACTTTCAATGCTGAGGAATGATATTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCACTGATACAAGTCTACTTTCAATGCTGAGGAATGATATTCAT  250

seq1  AGGTGATAATGAGACACACATTTATCTGTGTTTGCATCACTCTATCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATAATGAGACACACATTTATCTGTGTTTGCATCACTCTATCCACA  300

seq1  ACAGCTACAACATGGAATCAGCCTAGATATCCATCACTGCATGAAAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACAACATGGAATCAGCCTAGATATCCATCACTGCATGAAAGTGG  350

seq1  ATGATGGTTAATGAAAATATGGTGCCTATTCACAATGGGGTTTTATTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGTTAATGAAAATATGGTGCCTATTCACAATGGGGTTTTATTTAA  400

seq1  CTGTAAAAAACCTAAAATCTCCAGATAAATAAATGGATATGGAAACTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAAAACCTAAAATCTCCAGATAAATAAATGGATATGGAAACTATT  450

seq1  ATACTGACTGAGGTAACCCAAACCCAGAAAGGAAAATGCCACATGTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGACTGAGGTAACCCAAACCCAGAAAGGAAAATGCCACATGTCCTC  500

seq1  ATATTTGGATCCAGATGGCAAATCTTTAGATTCGTATTTTAAGTTGAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGGATCCAGATGGCAAATCTTTAGATTCGTATTTTAAGTTGAAGT  550

seq1  GCCTGTGGAGTCCAGGAAACTAGAAAGTGGTCATTTGTAGATAGAGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGGAGTCCAGGAAACTAGAAAGTGGTCATTTGTAGATAGAGGAAG  600

seq1  AAAGGCCTTAGGGATAGGTGAACACAGGTAATATGAAGGGAATGGGGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCTTAGGGATAGGTGAACACAGGTAATATGAAGGGAATGGGGTAA  650

seq1  TAAATAGTGGGGTTTAA  667
      |||||||||||||||||
seq2  TAAATAGTGGGGTTTAA  667

seq1: chr13_63159381_63160527
seq2: B6Ng01-323K12.g_69_1197 (reverse)

seq1  TCCCAGTGATGGCCGACTAGGCCATCTTCTGCTACATATGCAACTAGAGA  50
      |||||||||| |||||||||||||||||| ||||   |||| ||||||||
seq2  TCCCAGTGAT-GCCGACTAGGCCATCTTCGGCTAACAATGCCACTAGAGA  49

seq1  TACGACCTCTGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGG  100
      | |||||||| ||||||||  ||| ||||| ||||||||   ||||||| 
seq2  T-CGACCTCT-GGGTACTG--TAG-TCATA-TGTTGTTC--ACTATAGG-  90

seq1  TTGCAGACCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTTCTCCATTAGG  150
       |||||||||  |||||||||| ||||||||||||||| ||| ||||| |
seq2  -TGCAGACCC--TCAGCTCCTT-GGTACTTTCTCTAGC-TCT-CATTA-G  133

seq1  GGCCCTGTGTTCCATCTTATAGATGACTGTGAGCATCCACTTCTGTATTT  200
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  GGCCCTGTG-TCCATCTTATAGATGACTGTGAGCAT-CACTTCTGTATTT  181

seq1  GCCAGGCACTGGCATAGCCTCATACGAGACAGCTACAACAGGGTCCC-TT  249
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCCAGGCACTGGCATAGCCTCATACGAGACAGCTACAACAGGGTCCCTTT  231

seq1  CAGCAAAATCTTTCTGGCATATGTAATTAATAGTGTCTGGGTTTGGTGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAATCTTTCTGGCATATGTAATTAATAGTGTCTGGGTTTGGTGGC  281

seq1  TGCTTATGGAATGGATCCCTGGGTGGGATATTCTCTGGATAGTCCATCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATGGAATGGATCCCTGGGTGGGATATTCTCTGGATAGTCCATCCT  331

seq1  TTCGTCTTAGCTCCTAACTTTGTCTCTTTAACTCCTTTCATTGGTATTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTCTTAGCTCCTAACTTTGTCTCTTTAACTCCTTTCATTGGTATTTT  381

seq1  GTTCCCTATTCTAAGGAGGAATGAAGTATCCACCCATTGGTCTTCCCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTATTCTAAGGAGGAATGAAGTATCCACCCATTGGTCTTCCCTCT  431

seq1  TCTTGATTTTCTTATGTTTTGCAAATTGGAAATAGCTACTTCTAACTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATTTTCTTATGTTTTGCAAATTGGAAATAGCTACTTCTAACTCTT  481

seq1  ACCTGGCTACTTGGTGTTTCCTGCCTTGAATTCTTGATAAGGTGCTTGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTACTTGGTGTTTCCTGCCTTGAATTCTTGATAAGGTGCTTGTT  531

seq1  ATGCAGAACTGGGCCTTTCCGATGTCCTTTGTTCTCTTTGTAGGTCACAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAACTGGGCCTTTCCGATGTCCTTTGTTCTCTTTGTAGGTCACAT  581

seq1  TATATGATTTGTATCAATACTTCAAGTTTGTATTCATGAAGAACCAGAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGATTTGTATCAATACTTCAAGTTTGTATTCATGAAGAACCAGAGG  631

seq1  CTTGTAGAAAAGCTATGGCTGTAACATTTCTTTGTGTTCCTTCTACTTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGAAAAGCTATGGCTGTAACATTTCTTTGTGTTCCTTCTACTTGG  681

seq1  AGTTAATAATGGTGCTTTGGTGTCTCCCCACTCTATTTTCTTGTATTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATAATGGTGCTTTGGTGTCTCCCCACTCTATTTTCTTGTATTTCT  731

seq1  GTGTATTTATCAGCCCTGGACTCTTCTTGGTCTCCTGGTTTCCTGAGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTATCAGCCCTGGACTCTTCTTGGTCTCCTGGTTTCCTGAGGGA  781

seq1  TTCTCTCTGGGTCCTTAGTTGACTTCTGTGGGTGTGTGGTCTGCAGGCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTGGGTCCTTAGTTGACTTCTGTGGGTGTGTGGTCTGCAGGCAT  831

seq1  TCTCATTTCTCTCTAGCCTCTTTTTGAAGCATATTTCTGTGGTCTAGTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTCTCTCTAGCCTCTTTTTGAAGCATATTTCTGTGGTCTAGTAG  881

seq1  CTTCCAAGGAATATGGGTGTGTAAGAGGTAGATGTTTTTAAGCTCTGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGGAATATGGGTGTGTAAGAGGTAGATGTTTTTAAGCTCTGTGT  931

seq1  ATCTGAAAATATAGAATCTTGTCTTTATTCTCCTGCTTCAGTTTCATAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAAATATAGAATCTTGTCTTTATTCTCCTGCTTCAGTTTCATAGT  981

seq1  ACTCTTGATATGAATGTCTTACTCTGTGTCTCAGGTATTTTGTGTCTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGATATGAATGTCTTACTCTGTGTCTCAGGTATTTTGTGTCTTTT  1031

seq1  CTGTCTGGAGTATCATGTTCCCTTTTGGTGCAATACCCTCAGTTGTAAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGGAGTATCATGTTCCCTTTTGGTGCAATACCCTCAGTTGTAAAC  1081

seq1  TGACAGTACTCTCCTACTTTCTTTCTCTGCCTTGTTTTGGAGGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTACTCTCCTACTTTCTTTCTCTGCCTTGTTTTGGAGGAATTC  1129