BAC Information

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BAC

Clone NameB6Ng01-324G01
Chromosome10 (Build37)13 (Build37)
Map Location 6,087,538 - 6,087,98949,492,663 - 49,493,544
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSyne1, Esr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12
Downstream geneMthfd1l, Plekhg1, Iyd, Ppp1r14c, EG666520, LOC100039303, LOC670558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324G01.bB6Ng01-324G01.g
ACCGA112707GA112708
length289884
definitionB6Ng01-324G01.b B6Ng01-324G01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,087,538 - 6,087,989)(49,492,663 - 49,493,544)
sequence
ctcatctttctgcctctccactccaagtactggggttacaggtatttata
tcccatggcaggctactttaatattcttagtcatacatcttctggaagca
tttttatggttttttttttttgtttttttgattttttttttgggggggtg
gtttgagacagggtttctctgtgtagccctggctgtcctggaactcattt
tgtagaccaggctgacctcgaactcagaaatctgtctgtctctgcctccc
aagtgctgggattaaaggcgtgcgccaccactgcctggc
gaattcactatgtagaccaagctggccttgaacacagagcgtcacctctc
tctgcctcctcctgagtgctgggattaaaggtgtatgctgcatgcacaac
ttccacatgcatgcaggtgcccacaaaggctaaataggacatggggaaag
gaggaattggagaggtagttcagtggttaagagcgtttgcagctctagca
gcgcctgtgttcagctcatagcacctgagtctgtgaatccagtcctgggg
atccagtgtcctctctggcctccatggccccaggcttacaggtggtgcac
attatccatgcaggcaaaccactttgacacctaagataagtctaaaagga
tacacctgcaacctcaaaggtcagagtcatccttggctggaggccagctt
gggacccctagctcaaaaacaacaaaacccaagcagtcatgtgaccttat
gtaccaaagccgtgccacttggtttctaatgtttgtgacagtcgaaatca
aatgctaacggtcagttttgttcctaaaggttgtgtcacgcacctgtctt
tctgttctcatcaagttttaggggcagcttgccaatttctgcagtgtctt
gctaggaacattggttacagctattgtgttttagcactgacagcataaaa
gagaaatgttatgtttcactgctgctcggttaataatacctttaacttcg
agcgtactagaaatgagccaggtgcgatggtgtgtgcctgaagtcccagc
tgcttgggaagcacacgtgttttgacgccaacctaggtgacctagtgagc
cgtctggaggatggagaaaaaaaagaggaaaagagaagaaaggaaaggga
ggacgggagaggagatgagagggaaggaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_6087538_6087989
seq2: B6Ng01-324G01.b_155_342 (reverse)

seq1  GCCAGGCGGTGGTGGCACACGCCTGTAATCCCAGCACTTGGGAGGCAGAG  50
      ||||||| |||||||| ||||||| |||||||||||||||||||||||||
seq2  GCCAGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAG  50

seq1  ACAGGCAGATTTCTGAGTTCGGGGCCAGCCTGGTCTACAGAGTGAGTTTC  100
      |||| |||||||||||||||| || |||||||||||||| | |||||| |
seq2  ACAGACAGATTTCTGAGTTCGAGGTCAGCCTGGTCTACAAAATGAGTTCC  100

seq1  AGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAA----CCAAA  146
      ||||||||||||||||||||||||||||||||||||||  |    || ||
seq2  AGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAACCACCCCCCCAA  150

seq1  AAAACAAAACAAAAAAATCAGGTTTTTATGGCAGCACATACCAT-TAATC  195
      |||| ||| ||||||||  |            |  | | |||||  ||  
seq2  AAAAAAAATCAAAAAAACAA----------AAAAAAAAAACCATAAAA--  188

seq1  CCAGGGGGAGGCAAAGATAGGCAGGACTTTGTGAGTTCAAGGCCAGCCTG  245
                                                        
seq2  --------------------------------------------------  188

seq1  ATCTACATACTAAGTTCCAAGCTAGCCAAGTCTGCACAGTGAGAATGCCT  295
                                                        
seq2  --------------------------------------------------  188

seq1  CAAAAAAAAAAAAAAAAAAAAAAGCAAAACAAAACAAAACAAAATCAGTA  345
                                                        
seq2  --------------------------------------------------  188

seq1  ATAAAACTAGATTTTCCCCTGGCCTCCTTTCTCCCCATCTTGGACTTCAT  395
                                                        
seq2  --------------------------------------------------  188

seq1  CACAATATCCCTGGGAGCCCAGTTACATGACCCCCCCCCCAAAAAAAAAA  445
                                                        
seq2  --------------------------------------------------  188

seq1  CCAAAAA  452
             
seq2  -------  188

seq1: chr13_49492663_49493544
seq2: B6Ng01-324G01.g_67_950

seq1  GAATTCACTATGTAGACCAAGCTGGCCTTGAACACAGAGCGTCACCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGACCAAGCTGGCCTTGAACACAGAGCGTCACCTCTC  50

seq1  TCTGCCTCCTCCTGAGTGCTGGGATTAAAGGTGTATGCTGCATGCACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTCCTGAGTGCTGGGATTAAAGGTGTATGCTGCATGCACAAC  100

seq1  TTCCACATGCATGCAGGTGCCCACAAAGGCTAAATAGGACATGGGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATGCATGCAGGTGCCCACAAAGGCTAAATAGGACATGGGGAAAG  150

seq1  GAGGAATTGGAGAGGTAGTTCAGTGGTTAAGAGCGTTTGCAGCTCTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTGGAGAGGTAGTTCAGTGGTTAAGAGCGTTTGCAGCTCTAGCA  200

seq1  GCGCCTGTGTTCAGCTCATAGCACCTGAGTCTGTGAATCCAGTCCTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTGTGTTCAGCTCATAGCACCTGAGTCTGTGAATCCAGTCCTGGGG  250

seq1  ATCCAGTGTCCTCTCTGGCCTCCATGGCCCCAGGCTTACAGGTGGTGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTGTCCTCTCTGGCCTCCATGGCCCCAGGCTTACAGGTGGTGCAC  300

seq1  ATTATCCATGCAGGCAAACCACTTTGACACCTAAGATAAGTCTAAAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCATGCAGGCAAACCACTTTGACACCTAAGATAAGTCTAAAAGGA  350

seq1  TACACCTGCAACCTCAAAGGTCAGAGTCATCCTTGGCTGGAGGCCAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTGCAACCTCAAAGGTCAGAGTCATCCTTGGCTGGAGGCCAGCTT  400

seq1  GGGACCCCTAGCTCAAAAACAACAAAACCCAAGCAGTCATGTGACCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCCTAGCTCAAAAACAACAAAACCCAAGCAGTCATGTGACCTTAT  450

seq1  GTACCAAAGCCGTGCCACTTGGTTTCTAATGTTTGTGACAGTCGAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAAGCCGTGCCACTTGGTTTCTAATGTTTGTGACAGTCGAAATCA  500

seq1  AATGCTAACGGTCAGTTTTGTTCCTAAAGGTTGTGTCACGCACCTGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAACGGTCAGTTTTGTTCCTAAAGGTTGTGTCACGCACCTGTCTT  550

seq1  TCTGTTCTCATCAAGTTTTAGGGGCAGCTTGCCAATTTCTGCAGTGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTCATCAAGTTTTAGGGGCAGCTTGCCAATTTCTGCAGTGTCTT  600

seq1  GCTAGGAACATTGGTTACAGCTATTGTGTTTTAGCACTGACAGCATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAACATTGGTTACAGCTATTGTGTTTTAGCACTGACAGCATAAAA  650

seq1  GAGAAATGTTATGTTTCACTGCTGCTCGGTTAATAATACCTTTAACTTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGTTATGTTTCACTGCTGCTCGGTTAATAATACCTTTAACTTCG  700

seq1  AGCGTACTAGAAATGAGCCAGGTGCGATGGTGTGTGCCTGAAGTCCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTACTAGAAATGAGCCAGGTGCGATGGTGTGTGCCTGAAGTCCCAGC  750

seq1  TGCTTGGGAAGCACACGTG-TTTGACGCCAACCTAGGTGACCTAGTGAGC  799
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGCTTGGGAAGCACACGTGTTTTGACGCCAACCTAGGTGACCTAGTGAGC  800

seq1  CGTCTGGAGGATGGAGAAAAAAAAGAGGAAAAGAGAAG-AAGGAAAGGGA  848
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CGTCTGGAGGATGGAGAAAAAAAAGAGGAAAAGAGAAGAAAGGAAAGGGA  850

seq1  GGACGGGAGAGGAGATGAGAGGGAAGGAGGAGGA  882
      ||||||||||||||||||||||||||||||||||
seq2  GGACGGGAGAGGAGATGAGAGGGAAGGAGGAGGA  884