BAC Information

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BAC

Clone NameB6Ng01-324M02
Chromosome13 (Build37)
Map Location 34,087,129 - 34,208,432
singlet/doubletdoublet
Overlap gene4930482L21Rik, Ripk1, Bphl, Tubb2a
Upstream geneSerpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2
Downstream geneLOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324M02.bB6Ng01-324M02.g
ACCGA112989GA112990
length1,1361,066
definitionB6Ng01-324M02.b B6Ng01-324M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,087,129 - 34,088,264)(34,207,360 - 34,208,432)
sequence
gaattccaaatacctgacttgtttgattgatcttataagatcacttggtc
cctgatgtgcctgagtctacaaaagagcttcccagagtaaaataggtgtg
actacttgttcctaaatacttggggctgtgcatctgctgccctctggtgg
cagtctgaagttgatgaacttggattcatcaattatagggcagagtggac
acagcagggctaccaagcccagctccctgtagaataacttactttctggg
gcttgtgcacatttaagccatgtgtttcccttttgcagctacatgtcctg
gaattcaatcgttcctctagctctgagaaataaaccacatctagagccct
gctgatcaacaatacttattaagaactatctattatcagagaaatgaagc
caaaactggaaataagatatattgccctcaaagtaataaaaatctatgcc
tcacaccagaaaaattttaatagctacatgatagtatcgtctagggggtg
tcttgagacctactaactgcatcattttggatggagtcaaaggcaaatct
tttgaacgacgtttcctatggtatgacaaatgaccacctaaacaatgatg
agaaattccaagtccagtatctcacaaagtacaataaaggatgggaaaca
cagatgggaaaaaggcaataattccaggtggaatgttctactcagaaggt
gaaattggttaggagttctaagaactaattttgaagaaattaggaacatc
aagctttcaccacaaaaaacttcctcttctacttttccaccacaatttga
acttgacacaataagaaatcagaaaccctgtagatatcaaattacaggaa
aaatgatattctgtacattttgtcctcacactgaggaggggttccttttt
aataaactggtatttaattttctctcaagaacatttagtgttattaactc
ataggggggtaatttctaaccccttctccacctacctttgttatttccag
agggagctttcaggctcagcatgggactcagcaagtccagaaatgccaca
cgtctgtgggtggtgtagaagatgactctgggcttctgaagctgcatcta
taagaagcatagtgggcatggtgggcccagagccac
gaattcttttgctgaaagagggagctggcaaagaattttttgcattcttg
acctgtggcattgacccccaactgttccccatcccactctttagatggca
ctcacataaccgtgcttccttgtctggataaaggctaaggggctgatgtg
tgtgctacatggagaaaggcaggctgtgttctgcccagccttctctaagc
aggctttttaggtggaactttgcaacagagcaccaacatatgggtgtggt
tgtgtttatttgaaagctattttattttgactgtcaaatactgtattcaa
tctattcaatcattcaagggttctgttgttggaaagttcaaaagcataga
agacatggctatctttaggacttacaggcttttcttaatatataccacac
cactgcccaaggctctgaaacaagtctcagatcagaaggcagatgagaga
aaggtgagagttgaaagcctttccctacatcagttgtagagggagctatg
caaatggtaaacacaacttggaagtagtgactaacagaggaagaggtgga
tggagaaagggttgccaggttacaagtgcccatgctcactcacccttctg
gatttactgcagtcctggccagcttctacaacatatacccaggccttggc
aactgccatgagaccacactgctcctggccctgactcctcactcaggtgg
ggtgagtccctttgcaagccagtcccagaagataaaactagaaactttct
caaataagctggacaagataaagctagtctcaatggcgtcccagccacaa
ggttctcctgccaatccaaatctcttagatgtcagcacaatatgcccagt
ttcccacagttccctaccacctcctctcaccacccattaatgatttctgg
ggaaagggtggtagttgaaactaggctatcagattgcagtgagcctagga
tggcccaggtctagctctttctttctttaccctaggcacagtccaaggtt
agactttgctctggctttcacaatggcctcttctttctactcattcttct
aagcttggataatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_34087129_34088264
seq2: B6Ng01-324M02.b_46_1181

seq1  GAATTCCAAATACCTGACTTGTTTGATTGATCTTATAAGATCACTTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATACCTGACTTGTTTGATTGATCTTATAAGATCACTTGGTC  50

seq1  CCTGATGTGCCTGAGTCTACAAAAGAGCTTCCCAGAGTAAAATAGGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGTGCCTGAGTCTACAAAAGAGCTTCCCAGAGTAAAATAGGTGTG  100

seq1  ACTACTTGTTCCTAAATACTTGGGGCTGTGCATCTGCTGCCCTCTGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTGTTCCTAAATACTTGGGGCTGTGCATCTGCTGCCCTCTGGTGG  150

seq1  CAGTCTGAAGTTGATGAACTTGGATTCATCAATTATAGGGCAGAGTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGAAGTTGATGAACTTGGATTCATCAATTATAGGGCAGAGTGGAC  200

seq1  ACAGCAGGGCTACCAAGCCCAGCTCCCTGTAGAATAACTTACTTTCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGGCTACCAAGCCCAGCTCCCTGTAGAATAACTTACTTTCTGGG  250

seq1  GCTTGTGCACATTTAAGCCATGTGTTTCCCTTTTGCAGCTACATGTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGCACATTTAAGCCATGTGTTTCCCTTTTGCAGCTACATGTCCTG  300

seq1  GAATTCAATCGTTCCTCTAGCTCTGAGAAATAAACCACATCTAGAGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCGTTCCTCTAGCTCTGAGAAATAAACCACATCTAGAGCCCT  350

seq1  GCTGATCAACAATACTTATTAAGAACTATCTATTATCAGAGAAATGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCAACAATACTTATTAAGAACTATCTATTATCAGAGAAATGAAGC  400

seq1  CAAAACTGGAAATAAGATATATTGCCCTCAAAGTAATAAAAATCTATGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTGGAAATAAGATATATTGCCCTCAAAGTAATAAAAATCTATGCC  450

seq1  TCACACCAGAAAAATTTTAATAGCTACATGATAGTATCGTCTAGGGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCAGAAAAATTTTAATAGCTACATGATAGTATCGTCTAGGGGGTG  500

seq1  TCTTGAGACCTACTAACTGCATCATTTTGGATGGAGTCAAAGGCAAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGACCTACTAACTGCATCATTTTGGATGGAGTCAAAGGCAAATCT  550

seq1  TTTGAACGACGTTTCCTATGGTATGACAAATGACCACCTAAACAATGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACGACGTTTCCTATGGTATGACAAATGACCACCTAAACAATGATG  600

seq1  AGAAATTCCAAGTCCAGTATCTCACAAAGTACAATAAAGGATGGGAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCCAAGTCCAGTATCTCACAAAGTACAATAAAGGATGGGAAACA  650

seq1  CAGATGGGAAAAAGGCAATAATTCCAGGTGGAATGTTCTACTCAGAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGGAAAAAGGCAATAATTCCAGGTGGAATGTTCTACTCAGAAGGT  700

seq1  GAAATTGGTTAGGAGTTCTAAGAACTAATTTTGAAGAAATTAGGAACATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGGTTAGGAGTTCTAAGAACTAATTTTGAAGAAATTAGGAACATC  750

seq1  AAGCTTTCACCACAAAAAACTTCCTCTTCTACTTTTCCACCACAATTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCACCACAAAAAACTTCCTCTTCTACTTTTCCACCACAATTTGA  800

seq1  ACTTGACACAATAAGAAATCAGAAACCCTGTAGATATCAAATTACAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACACAATAAGAAATCAGAAACCCTGTAGATATCAAATTACAGGAA  850

seq1  AAATGATATTCTGTACATTTTGTCCTCACACTGAGGAGGGGTTCCTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATATTCTGTACATTTTGTCCTCACACTGAGGAGGGGTTCCTTTTT  900

seq1  AATAAACTGGTATTTAATTTTCTCTCAAGAACATTTAGTGTTATTAACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTGGTATTTAATTTTCTCTCAAGAACATTTAGTGTTATTAACTC  950

seq1  ATA-GGGGGTAATTTCTAACCCCTTCT-CACCTACCTTTGTTATTTCCAG  998
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATAGGGGGGTAATTTCTAACCCCTTCTCCACCTACCTTTGTTATTTCCAG  1000

seq1  AGGGAGC-TTCAGGCTCAGCATGGGACTCAGGCCAGTCCAGAAATGCCAC  1047
      ||||||| |||||||||||||||||||||| || ||||||||||||||||
seq2  AGGGAGCTTTCAGGCTCAGCATGGGACTCA-GCAAGTCCAGAAATGCCAC  1049

seq1  ACGTCTGTGG--TGTGTAAGAGATGACTCT-GGCTTCTGAAGCTGCATCT  1094
      ||||||||||   |||||  |||||||||| |||||||||||||||||||
seq2  ACGTCTGTGGGTGGTGTAGAAGATGACTCTGGGCTTCTGAAGCTGCATCT  1099

seq1  AATAAAGGAAAGCAATAGT-GGCATGGTGGGCCCAGAGGCCAC  1136
       ||||    |||| ||||| ||||||||||||||||| |||||
seq2  -ATAA---GAAGC-ATAGTGGGCATGGTGGGCCCAGA-GCCAC  1136

seq1: chr13_34207360_34208432
seq2: B6Ng01-324M02.g_67_1132 (reverse)

seq1  ATCA-TATCC-AGCTTAAGAAGAATTGAAGTAGGAAAAGAGAGGCCATTG  48
      |||| ||||| ||||| ||||||||   |||| ||||  |||||||||||
seq2  ATCATTATCCAAGCTT-AGAAGAAT--GAGTA-GAAAGAAGAGGCCATTG  46

seq1  TGAAAGCCAAGAGCAAAAGTCTAACCTTGGACTGTGCCTAGGGGTAAAAG  98
      |||||||| ||||| ||||||||||||||||||||||||||||   ||||
seq2  TGAAAGCC-AGAGC-AAAGTCTAACCTTGGACTGTGCCTAGGG--TAAAG  92

seq1  AAAGGAAAGAGCTAGAACCTGGGGCCATCCTAGGCTCACTGCAATCTGAT  148
      ||| ||||||||||| |||| |||||||||||||||||||||||||||||
seq2  AAA-GAAAGAGCTAG-ACCT-GGGCCATCCTAGGCTCACTGCAATCTGAT  139

seq1  AGCCTAGTTTCAACTACCACCC-TTCCCCAGAAATCATTAATGGGTGGTG  197
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCCTAGTTTCAACTACCACCCTTTCCCCAGAAATCATTAATGGGTGGTG  189

seq1  AGAGGAGGTGGTAGGGAACTGTGGG-AACTGGGCATATTGTGCTGACATC  246
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAGGAGGTGGTAGGGAACTGTGGGAAACTGGGCATATTGTGCTGACATC  239

seq1  TAAGAGATTTGGATTGGCAGGAGAACCTTGTGGCTGGGACGCCATTGAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGATTTGGATTGGCAGGAGAACCTTGTGGCTGGGACGCCATTGAGA  289

seq1  CTAGCTTTATCTTGTCCAGCTTATTTGAGAAAGTTTCTAGTTTTATCTTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTTATCTTGTCCAGCTTATTTGAGAAAGTTTCTAGTTTTATCTTC  339

seq1  TGGGACTGGCTTGCAAAGGGACTCACCCCACCTGAGTGAGGAGTCAGGGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTGGCTTGCAAAGGGACTCACCCCACCTGAGTGAGGAGTCAGGGC  389

seq1  CAGGAGCAGTGTGGTCTCATGGCAGTTGCCAAGGCCTGGGTATATGTTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCAGTGTGGTCTCATGGCAGTTGCCAAGGCCTGGGTATATGTTGT  439

seq1  AGAAGCTGGCCAGGACTGCAGTAAATCCAGAAGGGTGAGTGAGCATGGGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGGCCAGGACTGCAGTAAATCCAGAAGGGTGAGTGAGCATGGGC  489

seq1  ACTTGTAACCTGGCAACCCTTTCTCCATCCACCTCTTCCTCTGTTAGTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTAACCTGGCAACCCTTTCTCCATCCACCTCTTCCTCTGTTAGTCA  539

seq1  CTACTTCCAAGTTGTGTTTACCATTTGCATAGCTCCCTCTACAACTGATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCAAGTTGTGTTTACCATTTGCATAGCTCCCTCTACAACTGATG  589

seq1  TAGGGAAAGGCTTTCAACTCTCACCTTTCTCTCATCTGCCTTCTGATCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAAGGCTTTCAACTCTCACCTTTCTCTCATCTGCCTTCTGATCTG  639

seq1  AGACTTGTTTCAGAGCCTTGGGCAGTGGTGTGGTATATATTAAGAAAAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGTTTCAGAGCCTTGGGCAGTGGTGTGGTATATATTAAGAAAAGC  689

seq1  CTGTAAGTCCTAAAGATAGCCATGTCTTCTATGCTTTTGAACTTTCCAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGTCCTAAAGATAGCCATGTCTTCTATGCTTTTGAACTTTCCAAC  739

seq1  AACAGAACCCTTGAATGATTGAATAGATTGAATACAGTATTTGACAGTCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACCCTTGAATGATTGAATAGATTGAATACAGTATTTGACAGTCA  789

seq1  AAATAAAATAGCTTTCAAATAAACACAACCACACCCATATGTTGGTGCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATAGCTTTCAAATAAACACAACCACACCCATATGTTGGTGCTC  839

seq1  TGTTGCAAAGTTCCACCTAAAAAGCCTGCTTAGAGAAGGCTGGGCAGAAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCAAAGTTCCACCTAAAAAGCCTGCTTAGAGAAGGCTGGGCAGAAC  889

seq1  ACAGCCTGCCTTTCTCCATGTAGCACACACATCAGCCCCTTAGCCTTTAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGCCTTTCTCCATGTAGCACACACATCAGCCCCTTAGCCTTTAT  939

seq1  CCAGACAAGGAAGCACGGTTATGTGAGTGCCATCTAAAGAGTGGGATGGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAAGGAAGCACGGTTATGTGAGTGCCATCTAAAGAGTGGGATGGG  989

seq1  GAACAGTTGGGGGTCAATGCCACAGGTCAAGAATGCAAAAAATTCTTTGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTTGGGGGTCAATGCCACAGGTCAAGAATGCAAAAAATTCTTTGC  1039

seq1  CAGCTCCCTCTTTCAGCAAAAGAATTC  1073
      |||||||||||||||||||||||||||
seq2  CAGCTCCCTCTTTCAGCAAAAGAATTC  1066