BAC Information

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BAC

Clone NameB6Ng01-325P04
Chromosome13 (Build37)
Map Location 4,878,288 - 5,018,416
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325P04.bB6Ng01-325P04.g
ACCGA113878GA113879
length1,2001,103
definitionB6Ng01-325P04.b B6Ng01-325P04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,878,288 - 4,879,498)(5,017,289 - 5,018,416)
sequence
gaattctgtgtatacatacatgactttgtttgatttgtgcgtatgagtgc
aacagctctcaatggtcaaaggatcttcttgccggttaagttacctctag
gtatgagctgcctgaagtgaatcctaagaaacaaatcctctgtaagagca
attcctgatcttaaccacttttaactactgagctgtcattctagctccag
tcaatactttattaatgtcaaaacatataagaggaaaagactctgggctc
tctgtccctttccaggcccagcattgactagataagtaatgagtttgatt
ttcatgaccgaacaaaagaacatctgcccacacattttaaatgtgagatc
acacaccatattatatcattattacatgaacatctgtccttggtactgca
tattatatagctatccagaattctggggttttgtcttcagcataacttat
gtaaccaagtttctattatgcatttcagtaatttaatcatggttcaaaat
gtttgtaggcttattgtatcaatagacactgacaaagagcaattatgagc
tttgcattattagtgtatttaccaacaatatgtatgtccatctctctcat
tcatactaatctgtagtattagatattttaatcaaattggttaggcagtg
agtgtcatgttttactactgttttaatttgtgttttttctattgctgaag
ccttagattttatgtgtttatttgtcatttttctttccttacacaccttg
ttaatactggtagtgctgacatttttcttatctacttaggtgagatttaa
atacaggagaaatattgtcacaatgttattgcaaagtgtaattttgctgt
gcagtaaccattatttgtatcctgaggattatttctggggcagattaaaa
gagctcaggaatagattaacactatgatccctttgtcaatggtaatagta
aaatttgaaacttgtttattttagaagcagtatcttgtcctttaaatata
ctggaaaatattttagctacacaataacatattttaaaggacatatcatt
tcatacagtacacatctatatttactaaatgattatttatgtggggaggt
actagcctgaaatgatctacgaaaaagtttatttctttattagacaatgg
agctgtaccctaacattgaacccaattcagttgtgactgtttcctggcaa

gaattcagtatgaataactctcctaagtgaggagcaggaaaaggcataat
aaatgtctgcaaatatcagttgggtgtgagcactgaagagagagacggat
gagggaagagaaggagatgataaggaataatggcgtggaattggaagtgt
tcataggaaaacacaatcacagccatgaaaaaaaaaaaaaaaaaaaaggc
tgtcactgaagaggctagacatggaggtaaaaagcaaaccaagcagattt
tttttttccagagatagaacacttacctaactcacagttcatgtcctaat
cctttaaaaaattcaaggataaataaaataagtgtttgttgtctgagtgg
tagttaagttcagcatttatactccacataaaacctgggtgtatttgttt
ccttgtaataccataattataaagacagggacaaaaggatcccttgggct
tactagttagcaactctaactagtgagatctaaattcaacaagaaacatc
tgaatttgacttctggtccccatattcgtgcacatgcatattcatacaca
taaacacacacaccccatcacaaaatagaaagtcagaatattttcaggag
accttgattctagtctaatgatgggagaattatcatgattaaatatgcag
caaaattaatgcccgttgtatacttgttttcctatgtagaaaatcaagta
aagaatttagaatacccctaccttgattctatgccagcttcactgctacc
attgtatctgttcctgtattcccttaatgaaatatggagaagaatttgca
aagttagcagcttttgtgtaaagagtaatgagttttataaggcttatgtc
ttctactcctgggcatgagacatattaactagtttagtttctaaggccgc
atcgtttctgttcaatcattccctgttttaggcctaagtcagaaatgtgc
cagtccctgctgcattttcttacttagccactatgaaataattctctctc
taaaaatatgggagaggggggacatatatgactcactgagtcatagcata
attataagtcttaacaataaggtttaacactatttcaaggagcgacctta
gat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_4878288_4879498
seq2: B6Ng01-325P04.b_46_1245

seq1  GAATTCTGTGTATACATACATGACTTTGTTTGATTTGTGCGTATGAGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTATACATACATGACTTTGTTTGATTTGTGCGTATGAGTGC  50

seq1  AACAGCTCTCAATGGTCAAAGGATCTTCTTGCCGGTTAAGTTACCTCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTCTCAATGGTCAAAGGATCTTCTTGCCGGTTAAGTTACCTCTAG  100

seq1  GTATGAGCTGCCTGAAGTGAATCCTAAGAAACAAATCCTCTGTAAGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGCTGCCTGAAGTGAATCCTAAGAAACAAATCCTCTGTAAGAGCA  150

seq1  ATTCCTGATCTTAACCACTTTTAACTACTGAGCTGTCATTCTAGCTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGATCTTAACCACTTTTAACTACTGAGCTGTCATTCTAGCTCCAG  200

seq1  TCAATACTTTATTAATGTCAAAACATATAAGAGGAAAAGACTCTGGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACTTTATTAATGTCAAAACATATAAGAGGAAAAGACTCTGGGCTC  250

seq1  TCTGTCCCTTTCCAGGCCCAGCATTGACTAGATAAGTAATGAGTTTGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCTTTCCAGGCCCAGCATTGACTAGATAAGTAATGAGTTTGATT  300

seq1  TTCATGACCGAACAAAAGAACATCTGCCCACACATTTTAAATGTGAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGACCGAACAAAAGAACATCTGCCCACACATTTTAAATGTGAGATC  350

seq1  ACACACCATATTATATCATTATTACATGAACATCTGTCCTTGGTACTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCATATTATATCATTATTACATGAACATCTGTCCTTGGTACTGCA  400

seq1  TATTATATAGCTATCCAGAATTCTGGGGTTTTGTCTTCAGCATAACTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATAGCTATCCAGAATTCTGGGGTTTTGTCTTCAGCATAACTTAT  450

seq1  GTAACCAAGTTTCTATTATGCATTTCAGTAATTTAATCATGGTTCAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCAAGTTTCTATTATGCATTTCAGTAATTTAATCATGGTTCAAAAT  500

seq1  GTTTGTAGGCTTATTGTATCAATAGACACTGACAAAGAGCAATTATGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAGGCTTATTGTATCAATAGACACTGACAAAGAGCAATTATGAGC  550

seq1  TTTGCATTATTAGTGTATTTACCAACAATATGTATGTCCATCTCTCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTATTAGTGTATTTACCAACAATATGTATGTCCATCTCTCTCAT  600

seq1  TCATACTAATCTGTAGTATTAGATATTTTAATCAAATTGGTTAGGCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTAATCTGTAGTATTAGATATTTTAATCAAATTGGTTAGGCAGTG  650

seq1  AGTGTCATGTTTTACTACTGTTTTAATTTGTGTTTTTTCTATTGCTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCATGTTTTACTACTGTTTTAATTTGTGTTTTTTCTATTGCTGAAG  700

seq1  CCTTAGATTTTATGTGTTTATTTGTCATTTTTCTTTCCTTACACACCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGATTTTATGTGTTTATTTGTCATTTTTCTTTCCTTACACACCTTG  750

seq1  TTAATACTGGTAGTGCTGACATTTTTCTTATCTACTTAGGTGAGATTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACTGGTAGTGCTGACATTTTTCTTATCTACTTAGGTGAGATTTAA  800

seq1  ATACAGGAGAAATATTGTCACAATGTTATTGCAAAGTGTAATTTTGCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGAGAAATATTGTCACAATGTTATTGCAAAGTGTAATTTTGCTGT  850

seq1  GCAGTAACCATTATTTGTATCCTGAGGATTATTTCTGGGGCAGATTAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAACCATTATTTGTATCCTGAGGATTATTTCTGGGGCAGATTAAAA  900

seq1  GAGCTCAGGGAATAGATTAACACTATGATCCCTTTGTCAATGGTAATAGT  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCA-GGAATAGATTAACACTATGATCCCTTTGTCAATGGTAATAGT  949

seq1  AAAAATTTGAAAACTTGTTTATTTTAAGAAGCAGTATCTTGTCCTTAAAA  1000
       |||||||| ||||||||||||||| |||||||||||||||||||| |||
seq2  -AAAATTTG-AAACTTGTTTATTTT-AGAAGCAGTATCTTGTCCTTTAAA  996

seq1  TATACTGGAAAAATATTTTAGCTACACAATAACATATTTTAAAAGACATA  1050
      |||||||| |||||||||||||||||||||||||||||||||| ||||| 
seq2  TATACTGG-AAAATATTTTAGCTACACAATAACATATTTTAAAGGACAT-  1044

seq1  ATCATTTCATAACAGTAACAACATCTAATATTTACTAAATGATTA-TTAT  1099
      |||||||||| ||||||   |||||| |||||||||||||||||| ||||
seq2  ATCATTTCAT-ACAGTA--CACATCT-ATATTTACTAAATGATTATTTAT  1090

seq1  GT-GGGAGGTACTAGGCCTGAAATGATCTACGAAAAAGTTTA-TTCTTAT  1147
      || ||||||||||| ||||||||||||||||||||||||||| |||||  
seq2  GTGGGGAGGTACTA-GCCTGAAATGATCTACGAAAAAGTTTATTTCTTTA  1139

seq1  ATAGACAAATGAGCTG-ACCCTACACA-TGAACACAATATTCCAAAGTTT  1195
       |||||||  |||||| |||||| ||| ||||| ||  ||||   || ||
seq2  TTAGACAATGGAGCTGTACCCTA-ACATTGAACCCA--ATTC---AG-TT  1182

seq1  GTGACTGTT--CTGGCAA  1211
      |||||||||  |||||||
seq2  GTGACTGTTTCCTGGCAA  1200

seq1: chr13_5017289_5018416
seq2: B6Ng01-325P04.g_64_1166 (reverse)

seq1  ATCTAATGTTTCGCTTCCCTTGAAATAGTGGTTAAAACACTAATTGTTAA  50
      |||||| |  |||||  |||||||||||| ||||||   || ||||||||
seq2  ATCTAAGG--TCGCT--CCTTGAAATAGT-GTTAAA--CCTTATTGTTAA  43

seq1  GACTTTATTAAAATTTAATTGCCTTATGACTCAGTTGAGTTCATTAATTA  100
      |||    ||| ||||    |||  |||||||||| |||| ||||    ||
seq2  GAC----TTATAATT---ATGC--TATGACTCAG-TGAG-TCAT---ATA  79

seq1  TGTCCCCCCTCTCCCATATTTTTTAGAAGAGA-AGAATTATTTCATAGTG  149
      |||||||||||||||||||||||    ||||| |||||||||||||||||
seq2  TGTCCCCCCTCTCCCATATTTTT----AGAGAGAGAATTATTTCATAGTG  125

seq1  GCTAAGTAAGAAAATGCAGCAGGGACTGGCACATTTCCTGACTTAGGCCT  199
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCTAAGTAAGAAAATGCAGCAGGGACTGGCACATTT-CTGACTTAGGCCT  174

seq1  AAAACAGGGAATGATTGAACAGAAACGATGCGGCCTTAGAAACTAAACTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGGAATGATTGAACAGAAACGATGCGGCCTTAGAAACTAAACTA  224

seq1  GTTAATATGTCTCATGCCCAGGAGTAGAAGACATAAGCCTTATAAAACTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATGTCTCATGCCCAGGAGTAGAAGACATAAGCCTTATAAAACTC  274

seq1  ATTACTCTTTACACAAAAGCTGCTAACTTTGCAAATTCTTCTCCATATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCTTTACACAAAAGCTGCTAACTTTGCAAATTCTTCTCCATATTT  324

seq1  CATTAAGGGAATACAGGAACAGATACAATGGTAGCAGTGAAGCTGGCATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGGGAATACAGGAACAGATACAATGGTAGCAGTGAAGCTGGCATA  374

seq1  GAATCAAGGTAGGGGTATTCTAAATTCTTTACTTGATTTTCTACATAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAGGTAGGGGTATTCTAAATTCTTTACTTGATTTTCTACATAGGA  424

seq1  AAACAAGTATACAACGGGCATTAATTTTGCTGCATATTTAATCATGATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTATACAACGGGCATTAATTTTGCTGCATATTTAATCATGATAA  474

seq1  TTCTCCCATCATTAGACTAGAATCAAGGTCTCCTGAAAATATTCTGACTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCATCATTAGACTAGAATCAAGGTCTCCTGAAAATATTCTGACTT  524

seq1  TCTATTTTGTGATGGGGTGTGTGTGTTTATGTGTATGAATATGCATGTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTGTGATGGGGTGTGTGTGTTTATGTGTATGAATATGCATGTGC  574

seq1  ACGAATATGGGGACCAGAAGTCAAATTCAGATGTTTCTTGTTGAATTTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATATGGGGACCAGAAGTCAAATTCAGATGTTTCTTGTTGAATTTAG  624

seq1  ATCTCACTAGTTAGAGTTGCTAACTAGTAAGCCCAAGGGATCCTTTTGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTAGTTAGAGTTGCTAACTAGTAAGCCCAAGGGATCCTTTTGTC  674

seq1  CCTGTCTTTATAATTATGGTATTACAAGGAAACAAATACACCCAGGTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTTATAATTATGGTATTACAAGGAAACAAATACACCCAGGTTTT  724

seq1  ATGTGGAGTATAAATGCTGAACTTAACTACCACTCAGACAACAAACACTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAGTATAAATGCTGAACTTAACTACCACTCAGACAACAAACACTT  774

seq1  ATTTTATTTATCCTTGAATTTTTTAAAGGATTAGGACATGAACTGTGAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTATCCTTGAATTTTTTAAAGGATTAGGACATGAACTGTGAGT  824

seq1  TAGGTAAGTGTTCTATCTCTGGAAAAAAAAAATCTGCTTGGTTTGCTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAGTGTTCTATCTCTGGAAAAAAAAAATCTGCTTGGTTTGCTTTT  874

seq1  TACCTCCATGTCTAGCCTCTTCAGTGACAGCCTTTTTTTTTTTTTTTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCATGTCTAGCCTCTTCAGTGACAGCCTTTTTTTTTTTTTTTTTT  924

seq1  TTCATGGCTGTGATTGTGTTTTCCTATGAACACTTCCAATTCCACGCCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGCTGTGATTGTGTTTTCCTATGAACACTTCCAATTCCACGCCAT  974

seq1  TATTCCTTATCATCTCCTTCTCTTCCCTCATCCGTCTCTCTCTTCAGTGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTATCATCTCCTTCTCTTCCCTCATCCGTCTCTCTCTTCAGTGC  1024

seq1  TCACACCCAACTGATATTTGCAGACATTTATTATGCCTTTTCCTGCTCCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCCAACTGATATTTGCAGACATTTATTATGCCTTTTCCTGCTCCT  1074

seq1  CACTTAGGAGAGTTATTCATACTGAATTC  1128
      |||||||||||||||||||||||||||||
seq2  CACTTAGGAGAGTTATTCATACTGAATTC  1103