BAC Information

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BAC

Clone NameB6Ng01-326H11
Chromosome13 (Build37)
Map Location 25,798,173 - 26,000,611
singlet/doubletdoublet
Overlap genenone
Upstream gene6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
Downstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326H11.bB6Ng01-326H11.g
ACCGA114269GA114270
length1,1401,111
definitionB6Ng01-326H11.b B6Ng01-326H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,999,457 - 26,000,611)(25,798,173 - 25,799,288)
sequence
gaattcaactgattattgtatgttgattttgcatcctgctcaccttaggg
aattcactcatttttagcaacctttagttgattctttatgattctccaca
tatgtatgcaaatgagggcaatattacttcatgcattatgatttgattgg
tgtctgtttctttctcttccctatgggttcttgtatgttacagtaccaaa
atgtggagagtaggttccacttctcagcttcgatctccaacatttcttgt
ctcttccatgaataatagcaatgatgttttctctgtgattttcattaatg
ctcttggacaggtggaagaaacctctgtttataatgctttatcaagaatt
tccaaaaataaaaaataaaatagaagaatttccaaatgctgaaacacgtt
ggactttctcagaggctttggctgcatctactgagatgagagtctggttc
tgccctcccaaacctttgtgactggctaagggtcattgaaccttgacttc
tgtcagaatcttatttagttttaagaaagcactgagaagcattaaatggc
ttagtctcaaaggccattcataggtcattctgatgcaaattgaatctgac
agtgaggttgaagaccaatatttgatgggtatgggcgtctgtaaaataca
attatcccttgccccaaattaattcaaacctttatcaatgctcatttctg
aatattggatgacgtaatctttttgaagcagttaagagaaatttgacatc
atacagactacatatcttaatgtgtgtcctattgttcttctttcaatgtt
gtcaagagggtaacacagccttatttacccttgagaatgattgacaattg
gaatatcatgccaagtcactgggtaaagatagatggaaaccttgtttagc
tatatttattttcctctttcccctcatacctctacccattacatacccaa
ttttatgtgtctataactctgcatgacattgaaacagatttctgtttctg
acaaacagtaatatgaacagcactggcaatcggcatggttctgagctatg
agactttttctcttgaatggtcaggataactctgcacccatgtggtggct
catacatctgtactctacttataacaccaaaatatcttta
gaattcttgctagaacgttcctggtccctatgattcaaactctctctgcc
tggggcatagggaactgggatgaatgtaacttctgagattagaaggccca
gccttctccaaggtcacgtgctctaaggagtggaataccagcagggtcca
gatttagtctgttcatttgcattgtggtcaacatggctagacttcccctc
cttctacatgtaagagatcttccaggcatccctgaatatgatgccatggg
agtcaggttccaggattccagagcagcaaggacactttcaaaggacaaaa
ttcaagacctacatactattccttttagtagagcaggagacaacccatat
caatgccattgtggtgctttatatataccatttctgtaatataaaaggtc
ttgtgttctatacattatttggggatttgttaggatttttttctgtctgc
tattttcgtgtctcacttcacattttgcttagctgctagataggaaactt
gaagagtccagcatattacgtaaacatagagatgaaatattattagaaaa
ctcaaagtggtagtccatttcttctatccagagacaattttaattctact
atgaaaaaattccaaagtgagagcaacattttagcttcgaatttattttg
acttattggaacagacagcaaaaaaatcatatctttgagtgttgggagga
acaagacacagcaggaaatgagaagtagaggggcagatgaacttggattt
ggaaaaaataatgcttcccagtgcaaaggaacagcaggagtagagtgtgc
tctgacaagtggacttgggagttggtatcatatgcagctgacactttaca
taggtatttttaatgaacattgagctaatgtagaaaagaaacacacacac
acacacatacacacacacacatggatgggaggggggaaatccacagaaca
tcaaaacatactgcccttctttcaagaggaagactgtgtagagtagcaat
aaactttaagaagccttgatcatgggtgaaattgaagatattgaataaga
tgtcaagccaagaaaggggcttataatttttatagaagaagtaattctct
ctaaggcctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_25999457_26000611
seq2: B6Ng01-326H11.b_47_1186 (reverse)

seq1  TAAAGATTATTTTGTGTGTATAAGTAGAGTTACAGATGGTTATGAGCCAC  50
      |||||||  ||| |||| ||||||||||| ||||||||  ||||||||||
seq2  TAAAGATATTTTGGTGT-TATAAGTAGAG-TACAGATG--TATGAGCCAC  46

seq1  CACATGGGTGCAGGGAAGTATTCCTTGGACCATTTCAAGAGAAAAAGTTC  100
      |||||||||||||   |||  ||||  ||||| |||||||||||||| ||
seq2  CACATGGGTGCAG---AGTTATCCT--GACCA-TTCAAGAGAAAAAG-TC  89

seq1  TCATAAGCTCAGAACCATTGCCGATTGCCAGTGCTGTTCATTATTACTTG  150
      |||| |||||||||||| |||||||||||||||||||||| |||||| ||
seq2  TCAT-AGCTCAGAACCA-TGCCGATTGCCAGTGCTGTTCA-TATTAC-TG  135

seq1  TTTGTCAGAAACAGAAATCTGTTTCAATGTCATGCAGAGTTATAGACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAGAAACAGAAATCTGTTTCAATGTCATGCAGAGTTATAGACACA  185

seq1  TAAAATTGGGTATGTAATGGGTAGAGGTATGAGGGGAAAGAGGAAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGGGTATGTAATGGGTAGAGGTATGAGGGGAAAGAGGAAAATAA  235

seq1  ATATAGCTAAACAAGGTTTCCATCTATCTTTACCCAGTGACTTGGCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCTAAACAAGGTTTCCATCTATCTTTACCCAGTGACTTGGCATGA  285

seq1  TATTCCAATTGTCAATCATTCTCAAGGGTAAATAAGGCTGTGTTACCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAATTGTCAATCATTCTCAAGGGTAAATAAGGCTGTGTTACCCTC  335

seq1  TTGACAACATTGAAAGAAGAACAATAGGACACACATTAAGATATGTAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAACATTGAAAGAAGAACAATAGGACACACATTAAGATATGTAGTC  385

seq1  TGTATGATGTCAAATTTCTCTTAACTGCTTCAAAAAGATTACGTCATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGATGTCAAATTTCTCTTAACTGCTTCAAAAAGATTACGTCATCCA  435

seq1  ATATTCAGAAATGAGCATTGATAAAGGTTTGAATTAATTTGGGGCAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAGAAATGAGCATTGATAAAGGTTTGAATTAATTTGGGGCAAGGG  485

seq1  ATAATTGTATTTTACAGACGCCCATACCCATCAAATATTGGTCTTCAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTATTTTACAGACGCCCATACCCATCAAATATTGGTCTTCAACC  535

seq1  TCACTGTCAGATTCAATTTGCATCAGAATGACCTATGAATGGCCTTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCAGATTCAATTTGCATCAGAATGACCTATGAATGGCCTTTGAG  585

seq1  ACTAAGCCATTTAATGCTTCTCAGTGCTTTCTTAAAACTAAATAAGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGCCATTTAATGCTTCTCAGTGCTTTCTTAAAACTAAATAAGATTC  635

seq1  TGACAGAAGTCAAGGTTCAATGACCCTTAGCCAGTCACAAAGGTTTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAAGTCAAGGTTCAATGACCCTTAGCCAGTCACAAAGGTTTGGGA  685

seq1  GGGCAGAACCAGACTCTCATCTCAGTAGATGCAGCCAAAGCCTCTGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAACCAGACTCTCATCTCAGTAGATGCAGCCAAAGCCTCTGAGAA  735

seq1  AGTCCAACGTGTTTCAGCATTTGGAAATTCTTCTATTTTATTTTTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAACGTGTTTCAGCATTTGGAAATTCTTCTATTTTATTTTTTATTT  785

seq1  TTGGAAATTCTTGATAAAGCATTATAAACAGAGGTTTCTTCCACCTGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATTCTTGATAAAGCATTATAAACAGAGGTTTCTTCCACCTGTCC  835

seq1  AAGAGCATTAATGAAAATCACAGAGAAAACATCATTGCTATTATTCATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATTAATGAAAATCACAGAGAAAACATCATTGCTATTATTCATGG  885

seq1  AAGAGACAAGAAATGTTGGAGATCGAAGCTGAGAAGTGGAACCTACTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACAAGAAATGTTGGAGATCGAAGCTGAGAAGTGGAACCTACTCTC  935

seq1  CACATTTTGGTACTGTAACATACAAGAACCCATAGGGAAGAGAAAGAAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTGGTACTGTAACATACAAGAACCCATAGGGAAGAGAAAGAAAC  985

seq1  AGACACCAATCAAATCATAATGCATGAAGTAATATTGCCCTCATTTGCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCAATCAAATCATAATGCATGAAGTAATATTGCCCTCATTTGCAT  1035

seq1  ACATATGTGGAGAATCATAAAGAATCAACTAAAGGTTGCTAAAAATGAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTGGAGAATCATAAAGAATCAACTAAAGGTTGCTAAAAATGAGT  1085

seq1  GAATTCCCTAAGGTGAGCAGGATGCAAAATCAACATACAATAATCAGTTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAAGGTGAGCAGGATGCAAAATCAACATACAATAATCAGTTG  1135

seq1  AATTC  1155
      |||||
seq2  AATTC  1140

seq1: chr13_25798173_25799288
seq2: B6Ng01-326H11.g_66_1176

seq1  GAATTCTTGCTAGAACGTTCCTGGTCCCTATGATTCAAACTCTCTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTAGAACGTTCCTGGTCCCTATGATTCAAACTCTCTCTGCC  50

seq1  TGGGGCATAGGGAACTGGGATGAATGTAACTTCTGAGATTAGAAGGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATAGGGAACTGGGATGAATGTAACTTCTGAGATTAGAAGGCCCA  100

seq1  GCCTTCTCCAAGGTCACGTGCTCTAAGGAGTGGAATACCAGCAGGGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTCCAAGGTCACGTGCTCTAAGGAGTGGAATACCAGCAGGGTCCA  150

seq1  GATTTAGTCTGTTCATTTGCATTGTGGTCAACATGGCTAGACTTCCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGTCTGTTCATTTGCATTGTGGTCAACATGGCTAGACTTCCCCTC  200

seq1  CTTCTACATGTAAGAGATCTTCCAGGCATCCCTGAATATGATGCCATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACATGTAAGAGATCTTCCAGGCATCCCTGAATATGATGCCATGGG  250

seq1  AGTCAGGTTCCAGGATTCCAGAGCAGCAAGGACACTTTCAAAGGACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGTTCCAGGATTCCAGAGCAGCAAGGACACTTTCAAAGGACAAAA  300

seq1  TTCAAGACCTACATACTATTCCTTTTAGTAGAGCAGGAGACAACCCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACCTACATACTATTCCTTTTAGTAGAGCAGGAGACAACCCATAT  350

seq1  CAATGCCATTGTGGTGCTTTATATATACCATTTCTGTAATATAAAAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCATTGTGGTGCTTTATATATACCATTTCTGTAATATAAAAGGTC  400

seq1  TTGTGTTCTATACATTATTTGGGGATTTGTTAGGATTTTTTTCTGTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCTATACATTATTTGGGGATTTGTTAGGATTTTTTTCTGTCTGC  450

seq1  TATTTTCGTGTCTCACTTCACATTTTGCTTAGCTGCTAGATAGGAAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCGTGTCTCACTTCACATTTTGCTTAGCTGCTAGATAGGAAACTT  500

seq1  GAAGAGTCCAGCATATTACGTAAACATAGAGATGAAATATTATTAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCCAGCATATTACGTAAACATAGAGATGAAATATTATTAGAAAA  550

seq1  CTCAAAGTGGTAGTCCATTTCTTCTATCCAGAGACAATTTTAATTCTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTGGTAGTCCATTTCTTCTATCCAGAGACAATTTTAATTCTACT  600

seq1  ATGAAAAAATTCCAAAGTGAGAGCAACATTTTAGCTTCGAATTTATTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAATTCCAAAGTGAGAGCAACATTTTAGCTTCGAATTTATTTTG  650

seq1  ACTTATTGGAACAGACAGCAAAAAAATCATATCTTTGAGTGTTGGGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTGGAACAGACAGCAAAAAAATCATATCTTTGAGTGTTGGGAGGA  700

seq1  ACAAGACACAGCAGGAAATGAGAAGTAGAGGGGCAGATGAACTTGGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACACAGCAGGAAATGAGAAGTAGAGGGGCAGATGAACTTGGATTT  750

seq1  GGAAAAAATAATGCTTCCCAGTGCAAAGGAACAGCAGGAGTAGAGTGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATAATGCTTCCCAGTGCAAAGGAACAGCAGGAGTAGAGTGTGC  800

seq1  TCTGACAAGTGGACTTGGGAGTTGGTATCATATGCAGCTGACACTTTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAAGTGGACTTGGGAGTTGGTATCATATGCAGCTGACACTTTACA  850

seq1  TAGGTATTTTTAATGAACATTGAGCTAATGTAGAAAAGAAACACACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTTTTAATGAACATTGAGCTAATGTAGAAAAGAAACACACACAC  900

seq1  ACACACATACACACACACACATGGAT-GGAGGGGG--AATCCACAGAACA  947
      |||||||||||||||||||||||||| ||||||||  |||||||||||||
seq2  ACACACATACACACACACACATGGATGGGAGGGGGGAAATCCACAGAACA  950

seq1  TCAAAACATACTG-CCTTC-TTCAAGAGG-AGACTGTGTAGAGTAGCAAT  994
      ||||||||||||| ||||| ||||||||| ||||||||||||||||||||
seq2  TCAAAACATACTGCCCTTCTTTCAAGAGGAAGACTGTGTAGAGTAGCAAT  1000

seq1  AAACTTTAAG-AGCTTTGATCAT-GGTG-AATTG-AGATAATTGATAAGA  1040
      |||||||||| ||| |||||||| |||| ||||| ||||| |  ||||||
seq2  AAACTTTAAGAAGCCTTGATCATGGGTGAAATTGAAGATATTGAATAAGA  1050

seq1  TGTCAAGCCA--GAAGGGGC-TATATTTTATAGAGAGTATCTCTAAGCTA  1087
      ||||||||||   ||||||| |||| ||| || |||              
seq2  TGTCAAGCCAAGAAAGGGGCTTATAATTTTTATAGA--------------  1086

seq1  GTGAAAATCAAGACCATCAAAGGGCCTAT  1116
         | ||  ||  |  || || |||||||
seq2  ---AGAAGTAATTCTCTCTAA-GGCCTAT  1111