BAC Information

Click to search

BAC

Clone NameB6Ng01-326K19
Chromosome13 (Build37)
Map Location 21,249,217 - 21,409,568
singlet/doubletdoublet
Overlap geneTrim27, Gpx5, LOC625752, Gpx6
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368
Downstream geneOlfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326K19.bB6Ng01-326K19.g
ACCGA114425GA114426
length1,1441,097
definitionB6Ng01-326K19.b B6Ng01-326K19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,249,217 - 21,250,358)(21,408,455 - 21,409,568)
sequence
gaattcatagtccacaattaaaaagtcctctctgggtaggctttgactga
cattctaggagtactctagtacttctagttctcagagtaaagacactaga
aaaaaattaataataatcatattctaatatatcatatattataatagtaa
tatggattatgtactagatgagaagttgattcctaaatagttcccatcaa
ttactgctgaaatgaactatttcacccacaaatttatgattgggaagagt
ggtagtttagaggagaaagacccccataagctcatatgtgagtgaatact
tcatccccggttggtggacctgtttgggaagggttaggagatggggcttc
ttggaggagggtgtcactggagatgggctctctctcctctccctcctccc
tccttcctctcctccccccaccccttgtgctgtggctggagatattagct
ctcagctactgctctagctctatgcttgctgccattagaaccacggattc
tagccctctggaactatgacccccaaattaaatgctttcttttataagat
actttactcatagtgtcttgcctcagcgatagaaaagcaattaaggcagg
aaatgttaccataaaagcattttagagttgtgtaacagggagtggaatct
taggagctgagggcgcactgacaatgtggaaaaaccttggcagaggtagg
attttttttttcccagatacaatcctaaatccaacgaattagatggcttg
gacactaccacacaggagtatttccttgaaggacctctgggtgtcgtcgc
tccccctatccctatttgacaaatgctggagacaccaatgacctctgttc
ctttagtcacccaggaaaggggagggaggcacgcagacaccccactgatc
tgtaggtccgtgatctgcaaaataaaagccctgcatccctccacagccca
ccttcactgcagagttcaagtcccatctattcaccggagaagtcatacag
cggaattcccaccagggaaaaagccaaagacagctccactttggaaatgc
caggattccatgctgtaaggtacagtgctgttataacctaacggtattag
taaagttctgcccgcccctcgcaccccccgcgtttcttaggggg
gaattctgtctggccaggcttgctcactcacctttaggaaagaaaaaacc
ttttgttcattgtctccgttcacatcccccttctcaaagagctggaaatt
ggggacatagccaccgcctggacgcacatacctgcagtgaaataaggtgt
tctcaagagaatccaaattaaatcaaggaggaataggaatgactaccagt
ggtcctcacaaaggaacagaaaggattgaggaaagagagaagataaagag
gagtctctgggctcaagattccaagcagggggctttgtggaactgaagaa
ttcagaacattaggaaggggatattttgacttcagattgccaggtgtatc
accatttcctatgttttttcctttcccctgaatgtcttctccttacatct
tccactattctcaccctcaatggagccaagtgtgggaagagtacttgggc
atttccaagagggctaaatggaattcaaggtgtcacggtgacattcttca
gcccattgttctatcaccttccctagaagattccagaatgggaaggtatc
taggcagatgaggaaagggtatcgctggggccccacacagcactcacttg
agtccaaggagaatctctgagttctttccaggttcttgctttccaaactg
gttgcatggaaagcccaaaaccgtgacgttgaatggcttcagctcctcct
gcaatgtgttcagctctgtagggagagggtgaacagcatggcagacttcc
tactcagtactcaagatgtgaaggacccactgtgctgaccctcttgtcat
gtgactacactgaggactatgaagagctgcagacttataagtaggcagag
cgagtcacaaggacacacggctctgggaactcatctccatggctacaggt
tttgcagcacagggtttcccaaataactgctcttcaccttgcacacagag
cttacttaagtaacagacactgactgactaggcttatggaaatagaaaag
caacaaatgacgtgctccctctgcccccacacagcctcatgatgcacctc
tgacctctgccacttccggaagactctcagctactgcatattggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21249217_21250358
seq2: B6Ng01-326K19.b_49_1192

seq1  GAATTCATAGTCCACAATTAAAAAGTCCTCTCTGGGTAGGCTTTGACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTCCACAATTAAAAAGTCCTCTCTGGGTAGGCTTTGACTGA  50

seq1  CATTCTAGGAGTACTCTAGTACTTCTAGTTCTCAGAGTAAAGACACTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGGAGTACTCTAGTACTTCTAGTTCTCAGAGTAAAGACACTAGA  100

seq1  AAAAAATTAATAATAATCATATTCTAATATATCATATATTATAATAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAATAATAATCATATTCTAATATATCATATATTATAATAGTAA  150

seq1  TATGGATTATGTACTAGATGAGAAGTTGATTCCTAAATAGTTCCCATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATTATGTACTAGATGAGAAGTTGATTCCTAAATAGTTCCCATCAA  200

seq1  TTACTGCTGAAATGAACTATTTCACCCACAAATTTATGATTGGGAAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTGAAATGAACTATTTCACCCACAAATTTATGATTGGGAAGAGT  250

seq1  GGTAGTTTAGAGGAGAAAGACCCCCATAAGCTCATATGTGAGTGAATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTTAGAGGAGAAAGACCCCCATAAGCTCATATGTGAGTGAATACT  300

seq1  TCATCCCCGGTTGGTGGACCTGTTTGGGAAGGGTTAGGAGATGGGGCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCCGGTTGGTGGACCTGTTTGGGAAGGGTTAGGAGATGGGGCTTC  350

seq1  TTGGAGGAGGGTGTCACTGGAGATGGGCTCTCTCTCCTCTCCCTCCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAGGGTGTCACTGGAGATGGGCTCTCTCTCCTCTCCCTCCTCCC  400

seq1  TCCTTCCTCTCCTCCCCCCACCCCTTGTGCTGTGGCTGGAGATATTAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTCTCCTCCCCCCACCCCTTGTGCTGTGGCTGGAGATATTAGCT  450

seq1  CTCAGCTACTGCTCTAGCTCTATGCTTGCTGCCATTAGAACCACGGATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTACTGCTCTAGCTCTATGCTTGCTGCCATTAGAACCACGGATTC  500

seq1  TAGCCCTCTGGAACTATGACCCCCAAATTAAATGCTTTCTTTTATAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTCTGGAACTATGACCCCCAAATTAAATGCTTTCTTTTATAAGAT  550

seq1  ACTTTACTCATAGTGTCTTGCCTCAGCGATAGAAAAGCAATTAAGGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACTCATAGTGTCTTGCCTCAGCGATAGAAAAGCAATTAAGGCAGG  600

seq1  AAATGTTACCATAAAAGCATTTTAGAGTTGTGTAACAGGGAGTGGAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTACCATAAAAGCATTTTAGAGTTGTGTAACAGGGAGTGGAATCT  650

seq1  TAGGAGCTGAGGGCGCACTGACAATGTGGAAAAACCTTGGCAGAGGTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCTGAGGGCGCACTGACAATGTGGAAAAACCTTGGCAGAGGTAGG  700

seq1  ATTTTTTTTTTCCCAGATACAATCCTAAATCCAACGAATTAGATGGCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTCCCAGATACAATCCTAAATCCAACGAATTAGATGGCTTG  750

seq1  GACACTACCACACAGGAGTATTTCCTTGAAGGACCTCTGGGTGTCGTCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTACCACACAGGAGTATTTCCTTGAAGGACCTCTGGGTGTCGTCGC  800

seq1  TCCCCCTATCCCTATTTGACAAATGCTGGAGACACCAATGACCTCTGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTATCCCTATTTGACAAATGCTGGAGACACCAATGACCTCTGTTC  850

seq1  C-TTAGTCACCCAGGAAAGGGGAGGGAGGCACGCAGACACCCCACTGATC  899
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTCACCCAGGAAAGGGGAGGGAGGCACGCAGACACCCCACTGATC  900

seq1  TGTAGGTCCGTGATCTGCAAAATAAAAGCCCTGCATCCCTCCACAGCCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTCCGTGATCTGCAAAATAAAAGCCCTGCATCCCTCCACAGCCCA  950

seq1  CC-TCACTGCAGAGTTCAAGTCCCATCTATTCACC-GAGAGGTCATACAG  997
      || |||||||||||||||||||||||||||||||| |||| |||||||||
seq2  CCTTCACTGCAGAGTTCAAGTCCCATCTATTCACCGGAGAAGTCATACAG  1000

seq1  CGGAATTCCCACCAGGGAAAAAGCCAAAGACAGCT-CACTTT-GAAATGC  1045
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  CGGAATTCCCACCAGGGAAAAAGCCAAAGACAGCTCCACTTTGGAAATGC  1050

seq1  CAGGATTCCAATGCTGTAAAAGTACAGTTGCTGTTATGACCTAACTGTAT  1095
      ||||||||| ||||||| || |||||| ||||||||| ||||||| ||||
seq2  CAGGATTCC-ATGCTGT-AAGGTACAG-TGCTGTTATAACCTAACGGTAT  1097

seq1  TAGTAAAGTTCTGCCCGCCCCCCGCAACCCCCGCGTTCCTTAGGGGG  1142
      ||||||||||||||||||||| |||| |||||||||| |||||||||
seq2  TAGTAAAGTTCTGCCCGCCCCTCGCACCCCCCGCGTTTCTTAGGGGG  1144

seq1: chr13_21408455_21409568
seq2: B6Ng01-326K19.g_66_1162 (reverse)

seq1  CTTCTAATATGCAGTAGCTGAGAGTCTTCTGGGAAAGTGGCAGGAGTGTC  50
      |||| |||||||||||||||||||||||| ||  |||||||| ||| |||
seq2  CTTCCAATATGCAGTAGCTGAGAGTCTTCCGG--AAGTGGCA-GAG-GTC  46

seq1  AGAGGTGCCATCATGAGGCTTGGTGTGGGGGCAGGAGGGAGCACGTTCAT  100
      ||||||| ||||||||||||  ||||||||||| ||||||||||| ||| 
seq2  AGAGGTG-CATCATGAGGCT--GTGTGGGGGCA-GAGGGAGCACG-TCA-  90

seq1  TTTGTTTGCCTTTTCCTTATTTTCCATAAGCCTAGTCAGTCAGTGTCTGT  150
      ||||||   ||||||  || ||||||||||||||||||||||||||||| 
seq2  TTTGTT--GCTTTTC--TA-TTTCCATAAGCCTAGTCAGTCAGTGTCTG-  134

seq1  TTACTTTAAGTAAGCTCTGTGTGCAAGGTGAAGAGCAGTTATTTGGGAAA  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAC-TTAAGTAAGCTCTGTGTGCAAGGTGAAGAGCAGTTATTTGGGAAA  183

seq1  CCCTGTGCTGCAAAACCTGTAGCCATGGAGATGAGTTCCCAGAGCCGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCTGCAAAACCTGTAGCCATGGAGATGAGTTCCCAGAGCCGTGT  233

seq1  GTCCTTGTGACTCGCTCTGCCTACTTATAAGTCTGCAGCTCTTCATAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGTGACTCGCTCTGCCTACTTATAAGTCTGCAGCTCTTCATAGTC  283

seq1  CTCAGTGTAGTCACATGACAAGAGGGTCAGCACAGTGGGTCCTTCACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTAGTCACATGACAAGAGGGTCAGCACAGTGGGTCCTTCACATC  333

seq1  TTGAGTACTGAGTAGGAAGTCTGCCATGCTGTTCACCCTCTCCCTACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTACTGAGTAGGAAGTCTGCCATGCTGTTCACCCTCTCCCTACAGA  383

seq1  GCTGAACACATTGCAGGAGGAGCTGAAGCCATTCAACGTCACGGTTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACACATTGCAGGAGGAGCTGAAGCCATTCAACGTCACGGTTTTGG  433

seq1  GCTTTCCATGCAACCAGTTTGGAAAGCAAGAACCTGGAAAGAACTCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCATGCAACCAGTTTGGAAAGCAAGAACCTGGAAAGAACTCAGAG  483

seq1  ATTCTCCTTGGACTCAAGTGAGTGCTGTGTGGGGCCCCAGCGATACCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTTGGACTCAAGTGAGTGCTGTGTGGGGCCCCAGCGATACCCTT  533

seq1  TCCTCATCTGCCTAGATACCTTCCCATTCTGGAATCTTCTAGGGAAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATCTGCCTAGATACCTTCCCATTCTGGAATCTTCTAGGGAAGGTG  583

seq1  ATAGAACAATGGGCTGAAGAATGTCACCGTGACACCTTGAATTCCATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACAATGGGCTGAAGAATGTCACCGTGACACCTTGAATTCCATTTA  633

seq1  GCCCTCTTGGAAATGCCCAAGTACTCTTCCCACACTTGGCTCCATTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTTGGAAATGCCCAAGTACTCTTCCCACACTTGGCTCCATTGAGG  683

seq1  GTGAGAATAGTGGAAGATGTAAGGAGAAGACATTCAGGGGAAAGGAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAATAGTGGAAGATGTAAGGAGAAGACATTCAGGGGAAAGGAAAAA  733

seq1  ACATAGGAAATGGTGATACACCTGGCAATCTGAAGTCAAAATATCCCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGAAATGGTGATACACCTGGCAATCTGAAGTCAAAATATCCCCTT  783

seq1  CCTAATGTTCTGAATTCTTCAGTTCCACAAAGCCCCCTGCTTGGAATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGTTCTGAATTCTTCAGTTCCACAAAGCCCCCTGCTTGGAATCTT  833

seq1  GAGCCCAGAGACTCCTCTTTATCTTCTCTCTTTCCTCAATCCTTTCTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGAGACTCCTCTTTATCTTCTCTCTTTCCTCAATCCTTTCTGTT  883

seq1  CCTTTGTGAGGACCACTGGTAGTCATTCCTATTCCTCCTTGATTTAATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGAGGACCACTGGTAGTCATTCCTATTCCTCCTTGATTTAATTT  933

seq1  GGATTCTCTTGAGAACACCTTATTTCACTGCAGGTATGTGCGTCCAGGCG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTCTTGAGAACACCTTATTTCACTGCAGGTATGTGCGTCCAGGCG  983

seq1  GTGGCTATGTCCCCAATTTCCAGCTCTTTGAGAAGGGGGATGTGAACGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTATGTCCCCAATTTCCAGCTCTTTGAGAAGGGGGATGTGAACGGA  1033

seq1  GACAATGAACAAAAGGTTTTTTCTTTCCTAAAGGTGAGTGAGCAAGCCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGAACAAAAGGTTTTTTCTTTCCTAAAGGTGAGTGAGCAAGCCTG  1083

seq1  GCCAGACAGAATTC  1114
      ||||||||||||||
seq2  GCCAGACAGAATTC  1097