BAC Information

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BAC

Clone NameB6Ng01-326L20
Chromosome13 (Build37)
Map Location 18,857,381 - 18,858,512
singlet/doubletsinglet
Overlap geneVps41
Upstream geneCdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
Downstream geneAmph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326L20.bB6Ng01-326L20.g
ACCGA114475GA114476
length1,2331,123
definitionB6Ng01-326L20.b B6Ng01-326L20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgtttttttgaaaacagtcatttaccaatggtaaatgaattg
aatctatagatcactttgagtaacatggtggtattaccaatattaattct
ttcagttcataaatgcaggctatcatgccatgtctttcttcaacaatatt
ttatagtattaactataggtcttatccaatttcttcattaaatttattcc
tagatattttattactgttgggaataaagtagctttcttttttcagacat
ctttatttaattgatttattaaattagcatacaagatacaagttagcatg
gcactattgagcaaagtttgttttagctgagtctcctcatcttcatcacc
tccacttctttctactttcatatcaaatgtgttccctttgcctcaacctc
ttttttatccttccatggctacttttctagtcatttagacattgcccata
ttatattgaattatgtagatacattacaaactatgatgcacttatgaggg
ggaacataagaaaacctgatttttgtctttctgagtttgggtcaccttgc
ttaatattattctatctagatccatccattttcctgctaatttcattttt
ttctttatgactgaataaaattcattatggctgtatacattttccttatc
tatttgcctcctgatggacatagaagccattcccaggtccttgctcttat
aatagatatgagatgcaaggagcatggatgcacgagtatctttatggtag
aaaagagaatcctttgggtgtttgcatagtagtagtagagccggtaactc
tgttctcagttcttctagaaactgcaacactgatttccataatagctgta
acagttggcattcccatcagcagtaaataagggtaccactttccccacac
cctcaaaaacatttattgccattttttttcaatgacagccatttgactgg
ggcaaggtggtatcataaaatagttcatacgtcttaatttgagactgtct
attcatttcattgttatttaattgatagttcaattatgcaacatctggtg
gtgcttgtatgccacaggtattcattagaggaagccagaaggaagaagag
atgtattgggagatggagttctaggtgactgtgagccaccttacattttg
aattgggatctggaacctgcccaaggaccagcaagcacctcttacccacc
agtgcaaacattctctctaagaccccaaagttt
gaattcatgttctgggtttgtcctgctccgtcatttctcaggcacttttc
ggttccgatgagctttgcttatataagtaagagtgagcttttgaaagcat
aagttaatagtgaccatgagtgcttggctatggagtgaagggaatgttcc
cactactcagtgaacattgaaaatgtaagctaccatcatcagccctacca
tattttgtcacttacctcttctgtttgttcaaagtggaaagtacattgta
atagagtgatttcacttttatgtcattgggatagttgtgctgctctctga
gctttctcgttctttctcagtgtggaaggaatcattactgacaaagcccc
tctctccatctgtaggacagcagcttgggttacaagccattatgtcttca
ggttcccaactcaaggttaaagaggaagacctcacagcacatttcttgtg
catattcctattgaactgtgaagtagagttagtgttacggggatgtgatg
gctatagtgactgtcagttttgtcagctattcaagccccgcttgtagctt
tgacagtttgggttctgcaagagccacaagcatatcagaggttagacttt
tctcttaaagttttttgaggtttgatcagtctctaaaacttttaaagaag
agatttaggaaaagaacattgtaaccagattgcttgtttccctatcttct
ttagtggtttgtctgttttacaggcttttgcctgttatttagttgtttgt
ctgtttcacgaggcctttgtctgttatttagttgttttcagactgactga
ttctcctacctgatgctcattgagcctttaaagctatggttcagctctaa
cagtactgtgcaaaactcaaagaatactctgtcttcccacagagatgtct
acacacacctctctgtgtttatcgatactttatcatgagcactgagcaca
tggaaataacatagatgtctctcagagataagcaggtaatggaatgtgat
aatgagatgacattctgttgtctgtgaattattcaggcaaaagaaaggaa
gtttcatttcttggaatggctatattctggaaatagcaaatggaagtaac
ccagattggaaaaataaatactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_18857381_18858512
seq2: B6Ng01-326L20.g_65_1187

seq1  GAATTCATGTTCTGGGTTTGTCCTGCTCCGTCATTTCTCAGGCACTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTCTGGGTTTGTCCTGCTCCGTCATTTCTCAGGCACTTTTC  50

seq1  GGTTCCGATGAGCTTTGCTTATATAAGTAAGAGTGAGCTTTTGAAAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCGATGAGCTTTGCTTATATAAGTAAGAGTGAGCTTTTGAAAGCAT  100

seq1  AAGTTAATAGTGACCATGAGTGCTTGGCTATGGAGTGAAGGGAATGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATAGTGACCATGAGTGCTTGGCTATGGAGTGAAGGGAATGTTCC  150

seq1  CACTACTCAGTGAACATTGAAAATGTAAGCTACCATCATCAGCCCTACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTCAGTGAACATTGAAAATGTAAGCTACCATCATCAGCCCTACCA  200

seq1  TATTTTGTCACTTACCTCTTCTGTTTGTTCAAAGTGGAAAGTACATTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTCACTTACCTCTTCTGTTTGTTCAAAGTGGAAAGTACATTGTA  250

seq1  ATAGAGTGATTTCACTTTTATGTCATTGGGATAGTTGTGCTGCTCTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTGATTTCACTTTTATGTCATTGGGATAGTTGTGCTGCTCTCTGA  300

seq1  GCTTTCTCGTTCTTTCTCAGTGTGGAAGGAATCATTACTGACAAAGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCGTTCTTTCTCAGTGTGGAAGGAATCATTACTGACAAAGCCCC  350

seq1  TCTCTCCATCTGTAGGACAGCAGCTTGGGTTACAAGCCATTATGTCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCATCTGTAGGACAGCAGCTTGGGTTACAAGCCATTATGTCTTCA  400

seq1  GGTTCCCAACTCAAGGTTAAAGAGGAAGACCTCACAGCACATTTCTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCAACTCAAGGTTAAAGAGGAAGACCTCACAGCACATTTCTTGTG  450

seq1  CATATTCCTATTGAACTGTGAAGTAGAGTTAGTGTTACGGGGATGTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCCTATTGAACTGTGAAGTAGAGTTAGTGTTACGGGGATGTGATG  500

seq1  GCTATAGTGACTGTCAGTTTTGTCAGCTATTCAAGCCCCGCTTGTAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGTGACTGTCAGTTTTGTCAGCTATTCAAGCCCCGCTTGTAGCTT  550

seq1  TGACAGTTTGGGTTCTGCAAGAGCCACAAGCATATCAGAGGTTAGACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTTTGGGTTCTGCAAGAGCCACAAGCATATCAGAGGTTAGACTTT  600

seq1  TCTCTTAAAGTTTTTTGAGGTTTGATCAGTCTCTAAAACTTTTAAAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAAAGTTTTTTGAGGTTTGATCAGTCTCTAAAACTTTTAAAGAAG  650

seq1  AGATTTAGGAAAAGAACATTGTAACCAGATTGCTTGTTTCCCTATCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAGGAAAAGAACATTGTAACCAGATTGCTTGTTTCCCTATCTTCT  700

seq1  TTAGTGGTTTGTCTGTTTTACAGGCTTTTGCCTGTTATTTAGTTGTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGTTTGTCTGTTTTACAGGCTTTTGCCTGTTATTTAGTTGTTTGT  750

seq1  CTGTTTCACGAGGCCTTTGTCTGTTATTTAGTTGTTTTCAGACTGACTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCACGAGGCCTTTGTCTGTTATTTAGTTGTTTTCAGACTGACTGA  800

seq1  TTCTCCTACCTGATGCTCATTGAGCCTTTAAAGCTATGGTTCAGCTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTACCTGATGCTCATTGAGCCTTTAAAGCTATGGTTCAGCTCTAA  850

seq1  CAGTACTGTGCAAAACTCAAAGAATACTCTGTCTTCCCACAGAGATGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTGTGCAAAACTCAAAGAATACTCTGTCTTCCCACAGAGATGTCT  900

seq1  ACACACACCTCTCTGTGTTTATCGATACTTTATCATGAGCACTGAGCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCTCTCTGTGTTTATCGATACTTTATCATGAGCACTGAGCACA  950

seq1  TGGAAATAACATAGATGTCTCTCAAGAGATAAGCAGGTAATGGGAATGTG  1000
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  TGGAAATAACATAGATGTCTCTC-AGAGATAAGCAGGTAAT-GGAATGTG  998

seq1  ATAATGAGGATGACA-TCTG-TGTCTTGTGAAATTTATTCAGCCAAAAAG  1048
      ||||||| ||||||| |||| |||| ||||||  |||||||| | |||||
seq2  ATAATGA-GATGACATTCTGTTGTC-TGTGAA--TTATTCAGGC-AAAAG  1043

seq1  AAAGGAAGGTTTTCATTTCTGGGAAAATGGCTATA-TCTGGAAAATAGCA  1097
      ||||||||  |||||||||| ||  |||||||||| ||||| ||||||||
seq2  AAAGGAAG--TTTCATTTCTTGG--AATGGCTATATTCTGG-AAATAGCA  1088

seq1  AAT-GAAGTAACCCAAGATTAGAAAAATAAATACTG  1132
      ||| |||||||||| ||||| |||||||||||||||
seq2  AATGGAAGTAACCC-AGATTGGAAAAATAAATACTG  1123