BAC Information

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BAC

Clone NameB6Ng01-326M19
Chromosome13 (Build37)
Map Location 25,029,692 - 25,139,874
singlet/doubletdoublet
Overlap geneGpld1, Mrs2l, LOC675430
Upstream geneScgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1
Downstream geneDcdc2a, Nrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326M19.bB6Ng01-326M19.g
ACCGA114520GA114521
length1,2341,047
definitionB6Ng01-326M19.b B6Ng01-326M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,138,646 - 25,139,874)(25,029,692 - 25,030,745)
sequence
gaattcccgatggttcatagtcacagcaatcaacccccagaatcatagaa
cctcattaactgtatctttgagctctaaaatttggaggccctgttttcca
actattgaggtagataatctggagaagcaacacaaaccaaacagaatttc
atcttaacttggaaaaccagtgtcaaagtaaactttaggaaataaaagga
aactgctatttacaaagcagaaattgtgactggagagacagcccactgta
ccaagcacttgccaagcaaacctgaaaacctgggttctgtctccagtagg
aaaacagaactgattcccaagagttggcctctgacctccacacgtacacc
atcacttaaaagcccactctttgacaccacacacatacacacatacagat
aattttaaattttaccttattgttgttgtttgtgtatgatctgtatataa
gcaccactgtgcacatgcagtatacgtatggaggtcagaagacttttgga
aactgctgctctgcctccacagtggaatctgggggtgaactcaggttgct
aggcttgtatggcaagttcatttacctaccgagcaacatctttggcatta
aataataataataatatttaaagtgaataaaaggggaagctatagcatgg
atatagtcagcaaagctgagagctgtctcttggagtatttgctacataaa
ctccaggctgaaattaactaaatgtaaagaattgtaaaggaatgtcagga
atgatggctcaagccagtaatcccagcactcagaaagctgagacagcagg
attgctccaagtacaatgttagactgaactacagagtaagactgtatcct
aaaaaaacgaaagtttaaaaaaaatggcattaagaacaatggtgagaaca
gggacgatgcagcaacacattatagctgcctcagactttaagattaagaa
ttacgctgtggaatgcctatgctaataaacttgaaaaggatgagagtgtc
tgtaaaacacagaaagtcttcaaacctaaataaaacaaaagcagactcca
ctgttttgactgggtagttctgccagcgtttataaactataattaataac
tatactttcatctaatactaattcttttctgtgaactagcataggccctt
aatattaaaatctgggcaagacagaacatcgtcacttcctgggttgagag
aacatggtcagccccgggcccgagaagagtttct
tgcacataactcaccgttctcaatgtcggatgctcacctgtcatttcttt
aggccttaattgtgacgggagcactttctgttccccagttccccagcccc
ggcaatatgcactccgtctaaagaaggcaccaaaggccaaactcgcggtt
tcatatgctcgggctactgagcattggaactggggatcactgttcagtga
ggggtgaagtgtggctcagtgatcggttccttgcatgcttttctacatat
ccccttcatgaattcggagcacagcgctcctgagtactgagatttggggc
aaccgttcaattagggtcgaagtgaggcttcctcttgcatgctttctgtg
tgtgtcctctgttggtcctgagcagtggtgctcccaagccactgcccttt
gcttcgtgacgtagctgctgtacatcaagcaactaacagagctgaagttt
agtaactggaaacaatcatcctagaagtaataataagcccggtgttgtgg
ccagcacttgggaggctctcggtaagttcaaggctgagaccctattttaa
aaaagaaatcaacaggggtgtgaggattgaacatagcactatcaccttaa
acaaaatcttcatcctcctgctgcatctgggccccaaactctgcagaaga
aagaaaccctaagttttaatttgaataaaagaaacagcaggtttgtgttc
agaatacgtggagtcaaatgttgttgttattattgagaaaacatgttatt
atgtagcctaggatgacctacatctcgcagtcttccttcctagagttctg
gaattacaggcgagcactacatgccccagttagaatattgtatttgcaaa
atgccttggatgttcttttaattgttggctttgtcttctgctgagtcaga
gcctcccagtcatgtgccagatacatctggcagaagtctcaatagcagga
ttattgtgtgtacaggtaggtgtgcacacatatgtgctgtgtgtgtcact
actttgtcctgtatttattaggtactggagcgagagcggtcaggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_25138646_25139874
seq2: B6Ng01-326M19.b_48_1281 (reverse)

seq1  AGAAA--CCTCTCGGGCC--GGGCTGACCCCTGTGCTCTCA--CCAGGAA  44
      |||||  | |||||||||  ||||||| || ||| ||||||  |||||||
seq2  AGAAACTCTTCTCGGGCCCGGGGCTGA-CCATGTTCTCTCAACCCAGGAA  49

seq1  GGTGGCCGGTTGTCTGTCTTG-CCAGATTTTTATA-TAAGGG-CTATGCT  91
      |   | || |  ||||||||| ||||||||| ||| |||||| |||||||
seq2  G--TGACGATGTTCTGTCTTGCCCAGATTTTAATATTAAGGGCCTATGCT  97

seq1  AGGTTCA---GAAAGAATTAGTATTAGATTGAAATTATAGTTTATAATTT  138
      | |||||    ||||||||||||||||| ||||| ||||| |||| | ||
seq2  A-GTTCACAGAAAAGAATTAGTATTAGA-TGAAAGTATAG-TTATTAATT  144

seq1  ATAGTTTATAAACGCTTGGCAGAACTTACCAGTC-AAACAGTGGAGTCTT  187
      ||||||||||||||| ||||||||||  |||||| ||||||||||||| |
seq2  ATAGTTTATAAACGC-TGGCAGAACTACCCAGTCAAAACAGTGGAGTC-T  192

seq1  GCTTTTGTTTTATTTAGGTTTG-AGACTTTCTGTGTTTTACAGAACACTC  236
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  GCTTTTGTTTTATTTAGGTTTGAAGACTTTCTGTGTTTTACAG-ACACTC  241

seq1  TCATCCTTTTCAAGTTTATTAGCATAGGCATTCCACAGCGTAATTCTTAA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTTTTCAAGTTTATTAGCATAGGCATTCCACAGCGTAATTCTTAA  291

seq1  TCTTAAAGTCTGAGGCAGCTATAATGTGTTGCTGCATCGTCCCTGTTCTC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAGTCTGAGGCAGCTATAATGTGTTGCTGCATCGTCCCTGTTCTC  341

seq1  ACCATTGTTCTTAATGCCATTTTTTTTAAACTTTCGTTTTTTTAGGATAC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGTTCTTAATGCCATTTTTTTTAAACTTTCGTTTTTTTAGGATAC  391

seq1  AGTCTTACTCTGTAGTTCAGTCTAACATTGTACTTGGAGCAATCCTGCTG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTACTCTGTAGTTCAGTCTAACATTGTACTTGGAGCAATCCTGCTG  441

seq1  TCTCAGCTTTCTGAGTGCTGGGATTACTGGCTTGAGCCATCATTCCTGAC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTTTCTGAGTGCTGGGATTACTGGCTTGAGCCATCATTCCTGAC  491

seq1  ATTCCTTTACAATTCTTTACATTTAGTTAATTTCAGCCTGGAGTTTATGT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTACAATTCTTTACATTTAGTTAATTTCAGCCTGGAGTTTATGT  541

seq1  AGCAAATACTCCAAGAGACAGCTCTCAGCTTTGCTGACTATATCCATGCT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATACTCCAAGAGACAGCTCTCAGCTTTGCTGACTATATCCATGCT  591

seq1  ATAGCTTCCCCTTTTATTCACTTTAAATATTATTATTATTATTTAATGCC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTCCCCTTTTATTCACTTTAAATATTATTATTATTATTTAATGCC  641

seq1  AAAGATGTTGCTCGGTAGGTAAATGAACTTGCCATACAAGCCTAGCAACC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTTGCTCGGTAGGTAAATGAACTTGCCATACAAGCCTAGCAACC  691

seq1  TGAGTTCACCCCCAGATTCCACTGTGGAGGCAGAGCAGCAGTTTCCAAAA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCACCCCCAGATTCCACTGTGGAGGCAGAGCAGCAGTTTCCAAAA  741

seq1  GTCTTCTGACCTCCATACGTATACTGCATGTGCACAGTGGTGCTTATATA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGACCTCCATACGTATACTGCATGTGCACAGTGGTGCTTATATA  791

seq1  CAGATCATACACAAACAACAACAATAAGGTAAAATTTAAAATTATCTGTA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCATACACAAACAACAACAATAAGGTAAAATTTAAAATTATCTGTA  841

seq1  TGTGTGTATGTGTGTGGTGTCAAAGAGTGGGCTTTTAAGTGATGGTGTAC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGTGTGTGGTGTCAAAGAGTGGGCTTTTAAGTGATGGTGTAC  891

seq1  GTGTGGAGGTCAGAGGCCAACTCTTGGGAATCAGTTCTGTTTTCCTACTG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAGGTCAGAGGCCAACTCTTGGGAATCAGTTCTGTTTTCCTACTG  941

seq1  GAGACAGAACCCAGGTTTTCAGGTTTGCTTGGCAAGTGCTTGGTACAGTG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAACCCAGGTTTTCAGGTTTGCTTGGCAAGTGCTTGGTACAGTG  991

seq1  GGCTGTCTCTCCAGTCACAATTTCTGCTTTGTAAATAGCAGTTTCCTTTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCTCTCCAGTCACAATTTCTGCTTTGTAAATAGCAGTTTCCTTTT  1041

seq1  ATTTCCTAAAGTTTACTTTGACACTGGTTTTCCAAGTTAAGATGAAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTAAAGTTTACTTTGACACTGGTTTTCCAAGTTAAGATGAAATTC  1091

seq1  TGTTTGGTTTGTGTTGCTTCTCCAGATTATCTACCTCAATAGTTGGAAAA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTTTGTGTTGCTTCTCCAGATTATCTACCTCAATAGTTGGAAAA  1141

seq1  CAGGGCCTCCAAATTTTAGAGCTCAAAGATACAGTTAATGAGGTTCTATG  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCTCCAAATTTTAGAGCTCAAAGATACAGTTAATGAGGTTCTATG  1191

seq1  ATTCTGGGGGTTGATTGCTGTGACTATGAACCATCGGGAATTC  1229
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGGGGTTGATTGCTGTGACTATGAACCATCGGGAATTC  1234

seq1: chr13_25029692_25030745
seq2: B6Ng01-326M19.g_75_1121

seq1  TGCACATAACTCACCGTTCTCAATGTCGGATGCTCACCTGTCATTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATAACTCACCGTTCTCAATGTCGGATGCTCACCTGTCATTTCTTT  50

seq1  AGGCCTTAATTGTGACGGGAGCACTTTCTGTTCCCCAGTTCCCCAGCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTAATTGTGACGGGAGCACTTTCTGTTCCCCAGTTCCCCAGCCCC  100

seq1  GGCAATATGCACTCCGTCTAAAGAAGGCACCAAAGGCCAAACTCGCGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATATGCACTCCGTCTAAAGAAGGCACCAAAGGCCAAACTCGCGGTT  150

seq1  TCATATGCTCGGGCTACTGAGCATTGGAACTGGGGATCACTGTTCAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGCTCGGGCTACTGAGCATTGGAACTGGGGATCACTGTTCAGTGA  200

seq1  GGGGTGAAGTGTGGCTCAGTGATCGGTTCCTTGCATGCTTTTCTACATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAAGTGTGGCTCAGTGATCGGTTCCTTGCATGCTTTTCTACATAT  250

seq1  CCCCTTCATGAATTCGGAGCACAGCGCTCCTGAGTACTGAGATTTGGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCATGAATTCGGAGCACAGCGCTCCTGAGTACTGAGATTTGGGGC  300

seq1  AACCGTTCAATTAGGGTCGAAGTGAGGCTTCCTCTTGCATGCTTTCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTTCAATTAGGGTCGAAGTGAGGCTTCCTCTTGCATGCTTTCTGTG  350

seq1  TGTGTCCTCTGTTGGTCCTGAGCAGTGGTGCTCCCAAGCCACTGCCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTCTGTTGGTCCTGAGCAGTGGTGCTCCCAAGCCACTGCCCTTT  400

seq1  GCTTCGTGACGTAGCTGCTGTACATCAAGCAACTAACAGAGCTGAAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCGTGACGTAGCTGCTGTACATCAAGCAACTAACAGAGCTGAAGTTT  450

seq1  AGTAACTGGAAACAATCATCCTAGAAGTAATAATAAGCCCGGTGTTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTGGAAACAATCATCCTAGAAGTAATAATAAGCCCGGTGTTGTGG  500

seq1  CCAGCACTTGGGAGGCTCTCGGTAAGTTCAAGGCTGAGACCCTATTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTGGGAGGCTCTCGGTAAGTTCAAGGCTGAGACCCTATTTTAA  550

seq1  AAAAGAAATCAACAGGGGTGTGAGGATTGAACATAGCACTATCACCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATCAACAGGGGTGTGAGGATTGAACATAGCACTATCACCTTAA  600

seq1  ACAAAATCTTCATCCTCCTGCTGCATCTGGGCCCCAAACTCTGCAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCTTCATCCTCCTGCTGCATCTGGGCCCCAAACTCTGCAGAAGA  650

seq1  AAGAAACCCTAAGTTTTAATTTGAATAAAAGAAACAGCAGGTTTGTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCCTAAGTTTTAATTTGAATAAAAGAAACAGCAGGTTTGTGTTC  700

seq1  AGAATACGTGGAGTCAAATGTTGTTGTTATTATTGAGAAAACATGTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACGTGGAGTCAAATGTTGTTGTTATTATTGAGAAAACATGTTATT  750

seq1  ATGTAGCCTAGGATGACCTACATCTCGCAGTCTTCCTTCCTAGAGTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCCTAGGATGACCTACATCTCGCAGTCTTCCTTCCTAGAGTTCTG  800

seq1  GAATTACAGGCGAGCACTACATGCCCCAGTTAGAATATTGTATTTGCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACAGGCGAGCACTACATGCCCCAGTTAGAATATTGTATTTGCAAA  850

seq1  ATGCCTTGGATGTTCTTTTAATTGTTGGCTTTGTCTTCTGCTGAGTCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTGGATGTTCTTTTAATTGTTGGCTTTGTCTTCTGCTGAGTCAGA  900

seq1  GCCTCCCAGTCATGTGCCAGATACATCTGGCAGAAGTCTCAATAGCAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAGTCATGTGCCAGATACATCTGGCAGAAGTCTCAATAGCAGGA  950

seq1  TTTAATTGTGTGTACAGGTAGGTGTGCACACATATGTGCTGTGTGTGTTC  1000
      ||  ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TT--ATTGTGTGTACAGGTAGGTGTGCACACATATGTGCTGTGTGTG-TC  997

seq1  ACTACTTTGTCCTGTATTTTATTAAGGGAACTGGAGCGAGAAGCGGTCAA  1050
      |||||||||||||||| |||||||  || ||||||||||| |||||||| 
seq2  ACTACTTTGTCCTGTA-TTTATTA--GGTACTGGAGCGAG-AGCGGTCAG  1043

seq1  GATA  1054
      ||||
seq2  GATA  1047