BAC Information

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BAC

Clone NameB6Ng01-326P05
Chromosome13 (Build37)
Map Location 54,666,851 - 54,790,393
singlet/doubletdoublet
Overlap geneArl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44
Upstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik
Downstream geneBC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326P05.bB6Ng01-326P05.g
ACCGA114624GA114625
length350243
definitionB6Ng01-326P05.b B6Ng01-326P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,790,044 - 54,790,393)(54,666,851 - 54,667,092)
sequence
ctgtgtcttttcccaaatcacttcccactgtatgctgatacaatattcag
ttgaaattgataatattgttacaccttgttagtaaattggtttgtttttt
aaatatttgggattatgggatgcatccacaaagtacagagtgtcacccat
ctgtagccacagaggtttaacaaatgttgccattttctactgacatcctg
ttctgggttggtggactctgtagtagtccagttactacagaccggcctag
tagacatgagtgctttaggtaatggtgatgttctgcttatataatcgatg
cagacacaccataccccactttgtatgtttgcctggccgggggggggggg

cacggggttcccagaaaggaggtcacctgtttccagcacttcctctgcgc
tttttacttgattacagaattgtggcacttggaggctgaggcaggagcat
tgcctgaatcaaggagtgtggtgggggctgaggatgagaaggggggaaag
aatgaagattgatggctggagatggttcagttaaaacattaattactgca
cttgcagatgacctgggtttgttcccagcaccctttttttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_54790044_54790393
seq2: B6Ng01-326P05.b_58_407 (reverse)

seq1  CCCCCCCCCCCCGGCCAGGCAAACATACAAAGTGGGGTATGGTGTGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCGGCCAGGCAAACATACAAAGTGGGGTATGGTGTGTCTG  50

seq1  CATCGATTATATAAGCAGAACATCACCATTACCTAAAGCACTCATGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGATTATATAAGCAGAACATCACCATTACCTAAAGCACTCATGTCTA  100

seq1  CTAGGCCGGTCTGTAGTAACTGGACTACTACAGAGTCCACCAACCCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCGGTCTGTAGTAACTGGACTACTACAGAGTCCACCAACCCAGAA  150

seq1  CAGGATGTCAGTAGAAAATGGCAACATTTGTTAAACCTCTGTGGCTACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGTCAGTAGAAAATGGCAACATTTGTTAAACCTCTGTGGCTACAG  200

seq1  ATGGGTGACACTCTGTACTTTGTGGATGCATCCCATAATCCCAAATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGACACTCTGTACTTTGTGGATGCATCCCATAATCCCAAATATTT  250

seq1  AAAAAACAAACCAATTTACTAACAAGGTGTAACAATATTATCAATTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAACCAATTTACTAACAAGGTGTAACAATATTATCAATTTCAA  300

seq1  CTGAATATTGTATCAGCATACAGTGGGAAGTGATTTGGGAAAAGACACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATATTGTATCAGCATACAGTGGGAAGTGATTTGGGAAAAGACACAG  350

seq1: chr13_54666851_54667092
seq2: B6Ng01-326P05.g_74_316

seq1  CACGGGGTTCCCAGAAAGGAGGTCACCTGTTTCCAGCACTTCCTCTGCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGGTTCCCAGAAAGGAGGTCACCTGTTTCCAGCACTTCCTCTGCGC  50

seq1  TTTTTACTTGATTACAGAATTGTGGCACTTGGAGGCTGAGGCAGGAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTTGATTACAGAATTGTGGCACTTGGAGGCTGAGGCAGGAGCAT  100

seq1  TGCCTGAATCAAGGAGTGTGGTGGGGGCTGAGGATGAGAAGGGGGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAATCAAGGAGTGTGGTGGGGGCTGAGGATGAGAAGGGGGGAAAG  150

seq1  AATGAAGATTGATGGCTGGAGATGGTTCAGTTAAAACAGTAATTACTGCA  200
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATGAAGATTGATGGCTGGAGATGGTTCAGTTAAAACATTAATTACTGCA  200

seq1  CTTGCAGATGACCTGGGTTTGTTCCCAGCACCC-AGGTTTGGT  242
      |||||||||||||||||||||||||||||||||    ||||||
seq2  CTTGCAGATGACCTGGGTTTGTTCCCAGCACCCTTTTTTTGGT  243