BAC Information

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BAC

Clone NameB6Ng01-327D16
Chromosome13 (Build37)
Map Location 86,250,506 - 86,282,353
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042862, Ccnh, Rasa1, LOC435373, LOC675662, Cox7c
Downstream geneLOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327D16.bB6Ng01-327D16.g
ACCGA114833GA114834
length1,0891,156
definitionB6Ng01-327D16.b B6Ng01-327D16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,281,265 - 86,282,353)(86,250,506 - 86,251,298)
sequence
gaattctcagttgttcccttttgaaatagaaagaagtaaatagaaaaata
tgttttaaacatcatctttattttcatacattcacaacatatataaaaat
gaataaactatcagtaaaattgtgaactcaaacaattaataaatatatct
attttctaaactatggtctctgaacttgacctctaacaaagtggaaagca
tattgggtacaattataaaatcaaattagcatttcagaagaacatgtgag
acacataaaatgtaaagagtagcaattaaaataatttgaaataataaaag
taaagtaaatcacatgaagagtaaattcctgaagcttaatcttcatttaa
atatttagaaataatgaagcacggctacaaatctaacaattggaaatttt
tctatataataaaatatcattctcaaatctgagagtattggattcaatca
tatcaataaaattaaacatatatattataaatcatattaataataagaag
aaatgaatgttaatttatcctcagagagaaaattcaagtaacagagaagc
agcatttagagaaattattagttaagcatttttacgaattacaaacaagt
attttactatgagtgattaagtatgcatcaattttgcttataacaaaata
atagtctactgatatgtctttcagagaaaattctattcatttactctttc
ctatctttattcatcttttttccttagaattgttctggcatggcttctgg
tagtaagattttactgaagtgcatttattgatgttacatcaactggattg
agaactaacaatgtgagccataaatataaccacataaaatacaaatggcc
ttaatgtcctgggtgtgggggaaaatataataaataacagttttaaagtt
gtaggaattggaaataaagtatcattttaataaattcacacatggggccc
attagacttataaaaatgcaaaacattacacacttgaataagttaataaa
accagatgggaaataatttattaaaagctattaaaaaaggaaaaaaatca
gaaaactgtggtttgaaaaacatgatctgaaaacaaaac

gaattctttattgtttctacttccacttttagatcctggattgttttgtt
caattccttcacttgtttggttgtgttttcttgtaattctctaaggtatt
tttgtgtttcatctttaagagcttctacatgtttacctgtagaagttgta
tttctttaagggagttctttttgtccttctttaagtcatctatcatcatc
atgagaagtgatttttaaatctgaatcttgcttttcctgtgtgatggggt
actcagtactttctttggtgggagaattgttttctgatgatgccaagtaa
acttagtttctgttgcttatgttcttgtacttgcctctcaccatttgtta
tctctagtgctatctttactcactgtctctgattggagcctgtccctctt
gttatcttggttctgtcagaactcctcagagtccagccatttttgtgatc
ctgtgatcctgagatcctggaactaagagctcctgggattcatgctgcct
ctgtcatcctgatatcctattgtgaccaagctcctaagatcctatgatcc
tggtcttgttagagcacctgggaatcaaacttcctctgggtattctgaga
tttggttcatagctagtagccaatgtctgcccagggcactggttcagact
gaaaggaaaccatgccacttgtcaggcgagggttcccgtgtccctagatc
cacaagggtaccagttattccaggtgttggggcagatgttgtgacctcct
cacctataatcctgggtgtgctagagctcctgggagtctagcttcctctg
ggtgttgtgcgattggatgtgttgtgctctgagtccatgggaaacccaga
tcagcccaggaattgtgcagtttgctgcaactctcaaaagagcgagtttt
attgttccaagtttgaactcagatcacatgcctcgcattcacagagtgaa
tgctagcaagtgaccctgagtccagaaacactgggtttataacaatatag
ttagggatccctgatgttcacagagaggaggaggactaggagggctgtat
cattggttgaatcattactgagctggttggggctcatggggtgtttggtt
cagactaattaacggcaggtgtacctgtctgtgaacctctgaatttaccg
ttttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_86281265_86282353
seq2: B6Ng01-327D16.b_45_1133 (reverse)

seq1  GTTTTGTTTTCAGATCATG-TTTTCAAACCACAGTTTTCTGAATTTTTTT  49
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  GTTTTGTTTTCAGATCATGTTTTTCAAACCACAGTTTTCTG-ATTTTTTT  49

seq1  CCTTTTTTAATAGCTTTTAATAAATTATTTCCCATCTGGTTTTATTAACT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTAATAGCTTTTAATAAATTATTTCCCATCTGGTTTTATTAACT  99

seq1  TATTCAAGTGTGTAATGTTTTGCATTTTTATAAGTCTAATGGGCCCCATG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAGTGTGTAATGTTTTGCATTTTTATAAGTCTAATGGGCCCCATG  149

seq1  TGTGAATTTATTAAAATGATACTTTATTTCCAATTCCTACAACTTTAAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTTATTAAAATGATACTTTATTTCCAATTCCTACAACTTTAAAA  199

seq1  CTGTTATTTATTATATTTTCCCCCACACCCAGGACATTAAGGCCATTTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATTTATTATATTTTCCCCCACACCCAGGACATTAAGGCCATTTGT  249

seq1  ATTTTATGTGGTTATATTTATGGCTCACATTGTTAGTTCTCAATCCAGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGTGGTTATATTTATGGCTCACATTGTTAGTTCTCAATCCAGTT  299

seq1  GATGTAACATCAATAAATGCACTTCAGTAAAATCTTACTACCAGAAGCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAACATCAATAAATGCACTTCAGTAAAATCTTACTACCAGAAGCCA  349

seq1  TGCCAGAACAATTCTAAGGAAAAAAGATGAATAAAGATAGGAAAGAGTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAACAATTCTAAGGAAAAAAGATGAATAAAGATAGGAAAGAGTAA  399

seq1  ATGAATAGAATTTTCTCTGAAAGACATATCAGTAGACTATTATTTTGTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAGAATTTTCTCTGAAAGACATATCAGTAGACTATTATTTTGTTA  449

seq1  TAAGCAAAATTGATGCATACTTAATCACTCATAGTAAAATACTTGTTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAAATTGATGCATACTTAATCACTCATAGTAAAATACTTGTTTGT  499

seq1  AATTCGTAAAAATGCTTAACTAATAATTTCTCTAAATGCTGCTTCTCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCGTAAAAATGCTTAACTAATAATTTCTCTAAATGCTGCTTCTCTGT  549

seq1  TACTTGAATTTTCTCTCTGAGGATAAATTAACATTCATTTCTTCTTATTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAATTTTCTCTCTGAGGATAAATTAACATTCATTTCTTCTTATTA  599

seq1  TTAATATGATTTATAATATATATGTTTAATTTTATTGATATGATTGAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATGATTTATAATATATATGTTTAATTTTATTGATATGATTGAATC  649

seq1  CAATACTCTCAGATTTGAGAATGATATTTTATTATATAGAAAAATTTCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTCTCAGATTTGAGAATGATATTTTATTATATAGAAAAATTTCCA  699

seq1  ATTGTTAGATTTGTAGCCGTGCTTCATTATTTCTAAATATTTAAATGAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAGATTTGTAGCCGTGCTTCATTATTTCTAAATATTTAAATGAAG  749

seq1  ATTAAGCTTCAGGAATTTACTCTTCATGTGATTTACTTTACTTTTATTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCTTCAGGAATTTACTCTTCATGTGATTTACTTTACTTTTATTAT  799

seq1  TTCAAATTATTTTAATTGCTACTCTTTACATTTTATGTGTCTCACATGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTATTTTAATTGCTACTCTTTACATTTTATGTGTCTCACATGTT  849

seq1  CTTCTGAAATGCTAATTTGATTTTATAATTGTACCCAATATGCTTTCCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAAATGCTAATTTGATTTTATAATTGTACCCAATATGCTTTCCAC  899

seq1  TTTGTTAGAGGTCAAGTTCAGAGACCATAGTTTAGAAAATAGATATATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGAGGTCAAGTTCAGAGACCATAGTTTAGAAAATAGATATATTT  949

seq1  ATTAATTGTTTGAGTTCACAATTTTACTGATAGTTTATTCATTTTTATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTGTTTGAGTTCACAATTTTACTGATAGTTTATTCATTTTTATAT  999

seq1  ATGTTGTGAATGTATGAAAATAAAGATGATGTTTAAAACATATTTTTCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTGAATGTATGAAAATAAAGATGATGTTTAAAACATATTTTTCTA  1049

seq1  TTTACTTCTTTCTATTTCAAAAGGGAACAACTGAGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCTTTCTATTTCAAAAGGGAACAACTGAGAATTC  1089


seq1: chr13_86250506_86251298
seq2: B6Ng01-327D16.g_435_1219

seq1  ACTGTCTCTGATTGGAGCCTGTCCCTCTTGTTATCTTGGTTCTGTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCTGATTGGAGCCTGTCCCTCTTGTTATCTTGGTTCTGTCAGAA  50

seq1  CTCCTCAGAGTCCAGCCATTTTTGTGATCCTGTGATCCTGAGATCCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGAGTCCAGCCATTTTTGTGATCCTGTGATCCTGAGATCCTGGA  100

seq1  ACTAAGAGCTCCTGGGATTCATGCTGCCTCTGTCATCCTGATATCCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAGCTCCTGGGATTCATGCTGCCTCTGTCATCCTGATATCCTATT  150

seq1  GTGACCAAGCTCCTAAGATCCTATGATCCTGGTCTTGTTAGAGCACCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCAAGCTCCTAAGATCCTATGATCCTGGTCTTGTTAGAGCACCTGG  200

seq1  GAATCAAACTTCCTCTGGGTATTCTGAGATTTGGTTCATAGCTAGTAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAACTTCCTCTGGGTATTCTGAGATTTGGTTCATAGCTAGTAGCC  250

seq1  AATGTCTGCCCAGGGCACTGGTTCAGACTGAAAGGAAACCATGCCACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGCCCAGGGCACTGGTTCAGACTGAAAGGAAACCATGCCACTTG  300

seq1  TCAGGCGAGGGTTCCCGTGTCCCTAGATCCACAAGGGTACCAGTTATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCGAGGGTTCCCGTGTCCCTAGATCCACAAGGGTACCAGTTATTCC  350

seq1  AGGTGTTGGGGCAGATGTTGTGACCTCCTCACCTATAATCCTGGGTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTGGGGCAGATGTTGTGACCTCCTCACCTATAATCCTGGGTGTGC  400

seq1  TAGAGCTCCTGGGAGTCTAGCTTCCTCTGGGTGTTGTGCGATTGGATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTCCTGGGAGTCTAGCTTCCTCTGGGTGTTGTGCGATTGGATGTG  450

seq1  TTGTGCTCTGAGTCCATGGGAAACCCAGATCAGCCCAGGAATTGTGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTCTGAGTCCATGGGAAACCCAGATCAGCCCAGGAATTGTGCAGT  500

seq1  TTGCTGCAACTCTCAAAAGAGCGAGTTTTATTGTTCCAAGTTTGAACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCAACTCTCAAAAGAGCGAGTTTTATTGTTCCAAGTTTGAACTCA  550

seq1  GATCACATGCCTCGCATTCACAGAGTGAATGCTAGCAAGTGACCCTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACATGCCTCGCATTCACAGAGTGAATGCTAGCAAGTGACCCTGAGT  600

seq1  CCAGAAAACACTGGGTTTATAAACAATATAGTTAGGAATTCCCTGAATGT  650
      |||| ||||||||||||||| ||||||||||||||| | |||||| ||||
seq2  CCAG-AAACACTGGGTTTAT-AACAATATAGTTAGGGA-TCCCTG-ATGT  646

seq1  TCACAGAGAAGAGGAGGACTA-GAGGGCTGTAATCATTTGGTGAATCATT  699
      ||||||||| ||||||||||| ||||||||| |||||| | ||||||| |
seq2  TCACAGAGAGGAGGAGGACTAGGAGGGCTGT-ATCATTGGTTGAATCA-T  694

seq1  TACTGAAGCCGGGTGGGGGCTCAATGGGTGTTT-GTTCAGGGACTAATTT  748
      ||||||   | ||| ||||||||  |||||||| |||||  |||||| ||
seq2  TACTGA--GCTGGTTGGGGCTCATGGGGTGTTTGGTTCA--GACTAA-TT  739

seq1  TACGGCCAGTTGTAACTGTCTGTG-ACCTCTGATTTTACC-TTTTCT  793
       |||| ||| |||| ||||||||| |||||||| |||||| ||||||
seq2  AACGG-CAGGTGTACCTGTCTGTGAACCTCTGAATTTACCGTTTTCT  785


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