BAC Information

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BAC

Clone NameB6Ng01-330D10
Chromosome13 (Build37)
Map Location 107,056,081 - 107,200,512
singlet/doubletdoublet
Overlap genenone
Upstream geneRnf180, Htr1a, EG668025, Olfr717-ps1
Downstream geneLOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322, LOC100040350, LOC100040366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330D10.bB6Ng01-330D10.g
ACCGA116956GA116957
length1,135277
definitionB6Ng01-330D10.b B6Ng01-330D10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,056,081 - 107,056,915)(107,200,236 - 107,200,512)
sequence
gaattcagtaggaattcagtaagaatgttatctattcagtaacattcaaa
tttacttctagtagagcctatgaaactaattacacattacaaagaacgga
actagaatagctcagggctagtctgcagagtgattacttaggacagtagc
cagtcttacccaaacaagggaatacacaatggcctagctaataggtgggt
ttaccatgtaagagttagggaatcccactgagaggaatcttcactacagc
caggtatagcaggctacattgtatattagaagcaagttggtgaattcttc
tgacaaatggaaattcacaatacttaaaagtacagccaagttaacttcat
atgcaagaatttaccaaggcctaggaaataggaggtttgtgctattacat
cattcatgagaaggtctactaaagcagaaccccctggtgctagctttcac
aagtctcaaaggagtagcacaaattgtgaagagggtgtgaaaaccttacc
tgtcattaagctgaccctaggtaggactgccttatctttactgtaaatat
tacctggttcctgtaagtccttttgaagtcattcctttgttttgtgtcag
gtaacttcaatgtactttgcctgccgtgacatcctacccctttgttttct
gtattatataagactggtgttcactttgtgacaatacattcagattctac
gcaatcccttgtgtagcttctgtctgtcattcattcgccaactccttgtc
cacctgcaactagagacccattctattcagacagggaccaaaaagggtct
gcggccataatttcatcttgaggttggtaaattgtatatgaaataggaaa
ggaaaaattaccaaaaaaaagagagagagaaaatagtatctcctctcaaa
taaagcaatttccaaaatatgaaacaagaaatcataagtccaaatacaat
cattatacaaattaatgtgaatggattaagctaataaaatggaaaactga
atttagttgtaaagaaaagaataggatatagccaaaataaaggcaatggc
ataataaaacccaaattagtattactatatataaacaaagatatacggag
gtactaaagagagtattgttactctaaaaataata

agtccggagacagacattgtggacgggaaacaacttttgtaagttgtccc
ctaacctccatacaagtaacctcaataaatgtaatcatttgtttaagaaa
ataaggttagaccgtggtatctcagtaggagataagcatggtggctgtgg
gagcagtataatgacttctcaaggttccatatctgaatgctagaggagtg
aaagtcaaaaggcactgtacagttgtgatctggctataaattaaggtgga
aagataatgtggatggttggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_107056081_107056915
seq2: B6Ng01-330D10.b_358_1183

seq1  GAAATTCACAATACTTAAAAGTACAGCCAAGTTAACTTCATATGCAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCACAATACTTAAAAGTACAGCCAAGTTAACTTCATATGCAAGAA  50

seq1  TTTACCAAGGCCTAGGAAATAGGAGGTTTGTGCTATTACATCATTCATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAAGGCCTAGGAAATAGGAGGTTTGTGCTATTACATCATTCATGA  100

seq1  GAAGGTCTACTAAAGCAGAACCCCCTGGTGCTAGCTTTCACAAGTCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCTACTAAAGCAGAACCCCCTGGTGCTAGCTTTCACAAGTCTCAA  150

seq1  AGGAGTAGCACAAATTGTGAAGAGGGTGTGAAAACCTTACCTGTCATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAGCACAAATTGTGAAGAGGGTGTGAAAACCTTACCTGTCATTAA  200

seq1  GCTGACCCTAGGTAGGACTGCCTTATCTTTACTGTAAATATTACCTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCCTAGGTAGGACTGCCTTATCTTTACTGTAAATATTACCTGGTT  250

seq1  CCTGTAAGTCCTTTTGAAGTCATTCCTTTGTTTTGTGTCAGGTAACTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGTCCTTTTGAAGTCATTCCTTTGTTTTGTGTCAGGTAACTTCA  300

seq1  ATGTACTTTGCCTGCCGTGACATCCTACCCCTTTGTTTTCTGTATTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTTGCCTGCCGTGACATCCTACCCCTTTGTTTTCTGTATTATAT  350

seq1  AAGACTGGTGTTCACTTTGTGACAATACATTCAGATTCTACGCAATCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGGTGTTCACTTTGTGACAATACATTCAGATTCTACGCAATCCCT  400

seq1  TGTGTAGCTTCTGTCTGTCATTCATTCGCCAACTCCTTGTCCACCTGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCTTCTGTCTGTCATTCATTCGCCAACTCCTTGTCCACCTGCAA  450

seq1  CTAGAGACCCATTCTATTCAGACAGGGACCAAAAAGGGTCTGCGGCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGACCCATTCTATTCAGACAGGGACCAAAAAGGGTCTGCGGCCATA  500

seq1  ATTTCATCTTGAGGTTGGTAAATTGTATATGAAATAGGAAAGGAAAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATCTTGAGGTTGGTAAATTGTATATGAAATAGGAAAGGAAAAATT  550

seq1  ACCAAAAAAAAGAGAGAGAGAAAATAGTATCTCCTCTCAAATAAAGCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAAAAGAGAGAGAGAAAATAGTATCTCCTCTCAAATAAAGCAAT  600

seq1  TTCCAAAATATGAAACAAGAAATCATAAGTCCAAATACAATCATTATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAATATGAAACAAGAAATCATAAGTCCAAATACAATCATTATACA  650

seq1  AATTAATGTGAATGGATTAAGCTAATAAAATGGAAAACTGAATTTAGGTT  700
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AATTAATGTGAATGGATTAAGCTAATAAAATGGAAAACTGAATTTA-GTT  699

seq1  GTAAAGAAAAGAATAAGAATATAGCCAAAATAAAGGCAATGGCATAATTA  750
      |||||||||||||| || ||||||||||||||||||||||||||||| ||
seq2  GTAAAGAAAAGAAT-AGGATATAGCCAAAATAAAGGCAATGGCATAA-TA  747

seq1  AAACCCAAATTAGTATTACTATAATATAAAACAAAGATATAACAGAAGGT  800
      |||||||||||||||||||||| |||| |||||||||||||   | ||||
seq2  AAACCCAAATTAGTATTACTAT-ATAT-AAACAAAGATATA--CGGAGGT  793

seq1  ACTAAAGGAAGAGTATTGGTACTCTAAAAATAATA  835
      |||||||  ||||||||| ||||||||||||||||
seq2  ACTAAAG--AGAGTATTGTTACTCTAAAAATAATA  826


seq1: chr13_107200236_107200512
seq2: B6Ng01-330D10.g_74_350 (reverse)

seq1  CCCCCCCCCAACCATCCACATTATCTTTCCACCTTAATTTATAGCCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCAACCATCCACATTATCTTTCCACCTTAATTTATAGCCAGAT  50

seq1  CACAACTGTACAGTGCCTTTTGACTTTCACTCCTCTAGCATTCAGATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTGTACAGTGCCTTTTGACTTTCACTCCTCTAGCATTCAGATATG  100

seq1  GAACCTTGAGAAGTCATTATACTGCTCCCACAGCCACCATGCTTATCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTGAGAAGTCATTATACTGCTCCCACAGCCACCATGCTTATCTCC  150

seq1  TACTGAGATACCACGGTCTAACCTTATTTTCTTAAACAAATGATTACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGATACCACGGTCTAACCTTATTTTCTTAAACAAATGATTACATT  200

seq1  TATTGAGGTTACTTGTATGGAGGTTAGGGGACAACTTACAAAAGTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGGTTACTTGTATGGAGGTTAGGGGACAACTTACAAAAGTTGTTT  250

seq1  CCCGTCCACAATGTCTGTCTCCGGACT  277
      |||||||||||||||||||||||||||
seq2  CCCGTCCACAATGTCTGTCTCCGGACT  277


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