BAC Information

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BAC

Clone NameB6Ng01-330L22
Chromosome13 (Build37)
Map Location 26,263,466 - 26,403,113
singlet/doubletdoublet
Overlap geneLOC666221
Upstream geneNrsn1, Tpi-rs8, LOC214973
Downstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330L22.bB6Ng01-330L22.g
ACCGA117314GA117315
length1,1231,146
definitionB6Ng01-330L22.b B6Ng01-330L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,263,466 - 26,264,585)(26,401,950 - 26,403,113)
sequence
gaattctgtactggtcttctccctttcattttgtaaaaatggctttagtg
tattacctttgccattttgtttttatggtttttggaatcatgatcattat
agatctagtaggctcccaaaggcagtgccagttgtttctagaatttgaca
tatatatgtttcttggatagatcaacttgtatcttctcatctgatgagtt
taatgcgtcatcccatattcccttgctatggaacaaatccatgggttttc
tgaaggtttgaatttgtcgtcttctgaagtgcaggtctccaagtttcacc
tggtgaagaaaaacatagaagtgccttgatcaggagataaaggaacacta
aagagaatcattttatgagacacaagggaatatgctagcgacccatgagg
gaagacagactacaaagagaaagaaagaagcaaaaatggagacactgaaa
taattacatatctgtcaattcctttccccctctaaaacactcacctattt
tttcccctgtgacttcatttggaactgtcttcctttggctacatgtaaaa
aaaaatctacagtgcattcaatagtacaatacaaatccagaatgttttca
aatttccctattttatgggttctgagattgatggctctataattaaagtt
aacaaagaagcagggaattattaagattcaaatacagggccccagtcagc
aatgtggagagtagactgggaggagcaggaaaatcaaagggtgttcatca
tataatcttatcgtagtctggaaagagacatcagggatttatacaactag
ttatttgtttagattttacacacatagattttcagattttagggaagaca
tactaggttatctgaaccataaaaatttcttcaggttttaatgtgctttt
attgattggaaataacagtttaattaaatccttcataggaatatttgtgg
agtaaaccatgtccatagcacatgctttcaaggacaggagtagtaagaga
tgacactcaatactccaaagcagagcttggaaatcataagacaaggagaa
caacacacacacacacacacacactattttttaccccaaatagaaatgtt
atggactatttccagggattttt

gaattctcttaggaaagcaacagatgtatgttgaatgccagtgagggaac
agcccagtctataattaacaacatttggccaggcagatggccatttgcat
ttgccctctgtttgacatgtacaggtcaccatggaaccatgaagtcttgt
caaagttccccaggagaaactgaagaatgtagggcaatcaattaactatc
ttcacatttccttgaatgctaactggtgaaatatgaacatattttatcat
accgtgggtgtgtcctttactttccaataacacacagactcaaatgaaaa
atttctctcaattccatcacattgaaattgtctggggaaatggaaatgtt
gtcccttccatttctggttgctaatatttccatttataaaaggtgggaag
cgggtaagaagcaaaacacaattaaacaaggatttgtccactcaaaagta
agttttaggtcaatctgtctgtatgctttataagtacttattctgggtac
acatgatgtatccacctatgaaatagcaataggaacactcataagaatat
gttcacttggttttctagtgcttcagtatcaagtgaggaaagtacaaaag
taaccatgggaaacaatacatatcttaacagtaatataaatagttaattt
ggaaaactaaaggagtcttttcttaatgggtgccttaaccgctgttttat
tgctatgaagagacactacataaccaatgcgactctttaaaaggaaagaa
ttaactgttggcttgcttgtagtttcagagagctagtccgttaccaactt
agcagaaagcatggcatctgacatggccccggagcagtagctgagagcta
gagcttgatctgcaggtcacagaaagaggcagaacttgatctgacataga
ctttggaaaacctgactccccttgacccccgactcccatgacacactttc
ttaaaaggccacactcctgatccttctcaaatagggtcactctctgatgt
ctaaacattcaaatatatgagctacgggagcattattttgtgttgttcat
tttttcttcttttttaaaatgaatatttattattatatttcgatgtttgc
cccgttcggaatttccatggaatccctatccaatctccctttcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26263466_26264585
seq2: B6Ng01-330L22.b_44_1166

seq1  GAATTCTGTACTGGTCTTCTCCCTTTCATTTTGTAAAAATGGCTTTAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACTGGTCTTCTCCCTTTCATTTTGTAAAAATGGCTTTAGTG  50

seq1  TATTACCTTTGCCATTTTGTTTTTATGGTTTTTGGAATCATGATCATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCTTTGCCATTTTGTTTTTATGGTTTTTGGAATCATGATCATTAT  100

seq1  AGATCTAGTAGGCTCCCAAAGGCAGTGCCAGTTGTTTCTAGAATTTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAGTAGGCTCCCAAAGGCAGTGCCAGTTGTTTCTAGAATTTGACA  150

seq1  TATATATGTTTCTTGGATAGATCAACTTGTATCTTCTCATCTGATGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTTTCTTGGATAGATCAACTTGTATCTTCTCATCTGATGAGTT  200

seq1  TAATGCGTCATCCCATATTCCCTTGCTATGGAACAAATCCATGGGTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCGTCATCCCATATTCCCTTGCTATGGAACAAATCCATGGGTTTTC  250

seq1  TGAAGGTTTGAATTTGTCGTCTTCTGAAGTGCAGGTCTCCAAGTTTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTTTGAATTTGTCGTCTTCTGAAGTGCAGGTCTCCAAGTTTCACC  300

seq1  TGGTGAAGAAAAACATAGAAGTGCCTTGATCAGGAGATAAAGGAACACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGAAAAACATAGAAGTGCCTTGATCAGGAGATAAAGGAACACTA  350

seq1  AAGAGAATCATTTTATGAGACACAAGGGAATATGCTAGCGACCCATGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATCATTTTATGAGACACAAGGGAATATGCTAGCGACCCATGAGG  400

seq1  GAAGACAGACTACAAAGAGAAAGAAAGAAGCAAAAATGGAGACACTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGACTACAAAGAGAAAGAAAGAAGCAAAAATGGAGACACTGAAA  450

seq1  TAATTACATATCTGTCAATTCCTTTCCCCCTCTAAAACACTCACCTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACATATCTGTCAATTCCTTTCCCCCTCTAAAACACTCACCTATTT  500

seq1  TTTCCCCTGTGACTTCATTTGGAACTGTCTTCCTTTGGCTACATGTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTGTGACTTCATTTGGAACTGTCTTCCTTTGGCTACATGTAAAA  550

seq1  AAAAATCTACAGTGCATTCAATAGTACAATACAAATCCAGAATGTTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTACAGTGCATTCAATAGTACAATACAAATCCAGAATGTTTTCA  600

seq1  AATTTCCCTATTTTATGGGTTCTGAGATTGATGGCTCTATAATTAAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCTATTTTATGGGTTCTGAGATTGATGGCTCTATAATTAAAGTT  650

seq1  AACAAAGAAGCAGGGAATTATTAAGATTCAAATACAGGGCCCCAGTCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAAGCAGGGAATTATTAAGATTCAAATACAGGGCCCCAGTCAGC  700

seq1  AATGTGGAGAGTAGACTGGGAGGAGCAGGAAAATCAAAGGGTGTTCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGAGAGTAGACTGGGAGGAGCAGGAAAATCAAAGGGTGTTCATCA  750

seq1  TATAATCTTATCGTAGTCTGGAAAGAGACATCAGGGATTTATACAACTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTTATCGTAGTCTGGAAAGAGACATCAGGGATTTATACAACTAG  800

seq1  TTATTTGTTTAGATTTTACACACATAGATTTTCAGATTTTAGGGAAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTTAGATTTTACACACATAGATTTTCAGATTTTAGGGAAGACA  850

seq1  TACTAGGTTATCTGAACCATAAAAATTTCTTCAGGTTTTAATGTGCTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGTTATCTGAACCATAAAAATTTCTTCAGGTTTTAATGTGCTTTT  900

seq1  ATTGATTGGAAATAACAGTTTAATTAAATCCTTCATAGGAATATTTTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTGATTGGAAATAACAGTTTAATTAAATCCTTCATAGGAATA-TTTGTG  949

seq1  GAGTAAACCATGTCCATAGCACATGCTTTCAAGGACAGGAGTAGTAAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAACCATGTCCATAGCACATGCTTTCAAGGACAGGAGTAGTAAGAG  999

seq1  ATGACACTCAATACTCCAAAGCAGAGCTTGGGAAATCATAAGACAGGAGG  1050
      ||||||||||||||||||||||||||||| ||||||||||||||| |  |
seq2  ATGACACTCAATACTCCAAAGCAGAGCTT-GGAAATCATAAGACAAGGAG  1048

seq1  AACACACACACACACACACACACACACTA-TTTTTACCCCAAATAG--AT  1097
      |||| |||||||||||||||||||||||| ||||||||||||||||  ||
seq2  AACA-ACACACACACACACACACACACTATTTTTTACCCCAAATAGAAAT  1097

seq1  GTTAT-GACTATT--CAGGGTTTTTT  1120
      ||||| |||||||  ||||| |||||
seq2  GTTATGGACTATTTCCAGGGATTTTT  1123


seq1: chr13_26401950_26403113
seq2: B6Ng01-330L22.g_66_1211 (reverse)

seq1  -GGGGAGGGGAGATGGGATAGGGGATTTCCAAGGGAAAATCAGAAAGGGG  49
       ||| | ||||||| ||||| ||||||  | | ||||| || | || |||
seq2  GGGGAAAGGGAGATTGGATA-GGGATT--CCATGGAAATTCCG-AACGGG  46

seq1  GCAAACATTCGAAATATAAATAAATAAAATATACAATTTTTAAAAAAAGA  99
      ||||||| ||||||||| |||||   |||||| ||  |||||||||   |
seq2  GCAAACA-TCGAAATAT-AATAA--TAAATATTCA--TTTTAAAAA---A  87

seq1  AAAGAAAAAATGAACAACAACAAAATAATGCTCCCCTTAGGCTCATATAT  149
       ||||||||||||||||| |||||||||||||||| |   ||||||||||
seq2  GAAGAAAAAATGAACAAC-ACAAAATAATGCTCCCGT--AGCTCATATAT  134

seq1  TTGAATGTTTAGACATCAGAGAGTGACCCTATTTGAGAAGGATCAGGAGG  199
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGAATGTTTAGACATCAGAGAGTGACCCTATTTGAGAAGGATCAGGA-G  183

seq1  TGTGGCCTTTTTAAAGAAAGTGTGTCATGGGAGTCGGGGGTCAAGGGGAG  249
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTTTT--AAGAAAGTGTGTCATGGGAGTCGGGGGTCAAGGGGAG  231

seq1  TCAGGTTTTCCAAAGTCTATGTCAGATCAAGTTCTGCCTCTTTCTGTGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTTTCCAAAGTCTATGTCAGATCAAGTTCTGCCTCTTTCTGTGAC  281

seq1  CTGCAGATCAAGCTCTAGCTCTCAGCTACTGCTCCGGGGCCATGTCAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGATCAAGCTCTAGCTCTCAGCTACTGCTCCGGGGCCATGTCAGAT  331

seq1  GCCATGCTTTCTGCTAAGTTGGTAACGGACTAGCTCTCTGAAACTACAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCTTTCTGCTAAGTTGGTAACGGACTAGCTCTCTGAAACTACAAG  381

seq1  CAAGCCAACAGTTAATTCTTTCCTTTTAAAGAGTCGCATTGGTTATGTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAACAGTTAATTCTTTCCTTTTAAAGAGTCGCATTGGTTATGTAG  431

seq1  TGTCTCTTCATAGCAATAAAACAGCGGTTAAGGCACCCATTAAGAAAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTCATAGCAATAAAACAGCGGTTAAGGCACCCATTAAGAAAAGA  481

seq1  CTCCTTTAGTTTTCCAAATTAACTATTTATATTACTGTTAAGATATGTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAGTTTTCCAAATTAACTATTTATATTACTGTTAAGATATGTAT  531

seq1  TGTTTCCCATGGTTACTTTTGTACTTTCCTCACTTGATACTGAAGCACTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCCATGGTTACTTTTGTACTTTCCTCACTTGATACTGAAGCACTA  581

seq1  GAAAACCAAGTGAACATATTCTTATGAGTGTTCCTATTGCTATTTCATAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCAAGTGAACATATTCTTATGAGTGTTCCTATTGCTATTTCATAG  631

seq1  GTGGATACATCATGTGTACCCAGAATAAGTACTTATAAAGCATACAGACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATACATCATGTGTACCCAGAATAAGTACTTATAAAGCATACAGACA  681

seq1  GATTGACCTAAAACTTACTTTTGAGTGGACAAATCCTTGTTTAATTGTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGACCTAAAACTTACTTTTGAGTGGACAAATCCTTGTTTAATTGTGT  731

seq1  TTTGCTTCTTACCCGCTTCCCACCTTTTATAAATGGAAATATTAGCAACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCTTACCCGCTTCCCACCTTTTATAAATGGAAATATTAGCAACC  781

seq1  AGAAATGGAAGGGACAACATTTCCATTTCCCCAGACAATTTCAATGTGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGAAGGGACAACATTTCCATTTCCCCAGACAATTTCAATGTGAT  831

seq1  GGAATTGAGAGAAATTTTTCATTTGAGTCTGTGTGTTATTGGAAAGTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGAGAGAAATTTTTCATTTGAGTCTGTGTGTTATTGGAAAGTAAA  881

seq1  GGACACACCCACGGTATGATAAAATATGTTCATATTTCACCAGTTAGCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACCCACGGTATGATAAAATATGTTCATATTTCACCAGTTAGCAT  931

seq1  TCAAGGAAATGTGAAGATAGTTAATTGATTGCCCTACATTCTTCAGTTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAAATGTGAAGATAGTTAATTGATTGCCCTACATTCTTCAGTTTC  981

seq1  TCCTGGGGAACTTTGACAAGACTTCATGGTTCCATGGTGACCTGTACATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGAACTTTGACAAGACTTCATGGTTCCATGGTGACCTGTACATG  1031

seq1  TCAAACAGAGGGCAAATGCAAATGGCCATCTGCCTGGCCAAATGTTGTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGAGGGCAAATGCAAATGGCCATCTGCCTGGCCAAATGTTGTTA  1081

seq1  ATTATAGACTGGGCTGTTCCCTCACTGGCATTCAACATACATCTGTTGCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGACTGGGCTGTTCCCTCACTGGCATTCAACATACATCTGTTGCT  1131

seq1  TTCCTAAGAGAATTC  1164
      |||||||||||||||
seq2  TTCCTAAGAGAATTC  1146


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