BAC Information

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BAC

Clone NameB6Ng01-331N24
Chromosome13 (Build37)
Map Location 54,870,434 - 54,986,879
singlet/doubletdoublet
Overlap geneEif4e1b, Tspan17
Upstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb
Downstream geneUnc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331N24.bB6Ng01-331N24.g
ACCGA118132GA118133
length676773
definitionB6Ng01-331N24.b B6Ng01-331N24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,986,204 - 54,986,879)(54,870,434 - 54,871,203)
sequence
gtcttggccactgcccttgcctaaggaccccaggaccattcagactcgct
ctagcccatggctggccacagcctgatggcccatgagttgctaaggattg
tgactgtagcctgagtctctggtacagatctgtcttgaaggtcttctcaa
gcaacagagttccctgtcctacagacactgtccctggcttctccatccca
taagacaggctgcttcctgcctctgggctaacggggccggcagctctgcc
tgtgagaactctcagatccttccggctctgaagacctgtcttctacaggt
tggcccgcagccccagcaccactgatgcccttcccttcccagtgaccaat
actttaaaattagtcttctgttctaacgagagcgagactcattaaacttt
ccaccggggacgtgtttttatgttatttgcagatcgtcagcctggggtct
ttgcagtttattatcagagagtttttttttccctcccccctttgtcactg
aagagatcattttctgaatctagtggcccatgctggggaaagcctgggcc
tcccacatggccctcagactagccttccctgctcacacctgctcacacat
gggggagaagggaattctgggcccaattccagatggcttagcaaaccaca
tgggaagaaggaggtgggtgggggga
gaattctcagctcctcctgcgccatgcctgcctggatattgccatgctcc
caccttgatgataatggactgaacctctgaacctgtaagccagccccaat
taaatgttgtttttataagacttgccttggtcatggtgtctgttcacagc
agtaaaaccctgactaatacactcacctttcttctttgtgctgcgtggtt
attttccctagctcgggagatgcgtagcttcatgacattgcaactgtcca
ctcctgtgattggggactcactaccttctgaggcaaagcctaccccctcc
tcctctacagacagacaatgccaacctctgctacctcagcttcctcacat
gcaggacacatggctggcacttgtagctggagactagtctcagcaggaac
acagggtctgttctgatgaggaggggaagaggtgatggtgacagcccttg
ctagtggccatggacagcaatgccacccttcctagagtgtccagcatcaa
cagagcgagcaactgaccccagccctggtgtctgggaagcctcccgtgga
ctgccgggcagtgggctcagcatcactgcaggctgcagggtggctgtgga
gctttctgtcttcccagaggtagagccagttcggtgttttggttgtggat
gtctgttagatgagctgggtcagagtttctgtggcctgtgcgcagaatgc
tggtaagacgaagagtgcaggaaagcgggtcaagacatagaagggaaggg
acaaagatggatctttgtgtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_54986204_54986879
seq2: B6Ng01-331N24.b_61_736 (reverse)

seq1  TCCCCCCACCCACCTCCTTCTTCCCATGTGGTTTGCTAAGCCATCTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCACCCACCTCCTTCTTCCCATGTGGTTTGCTAAGCCATCTGGAA  50

seq1  TTGGGCCCAGAATTCCCTTCTCCCCCATGTGTGAGCAGGTGTGAGCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCCAGAATTCCCTTCTCCCCCATGTGTGAGCAGGTGTGAGCAGGG  100

seq1  AAGGCTAGTCTGAGGGCCATGTGGGAGGCCCAGGCTTTCCCCAGCATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAGTCTGAGGGCCATGTGGGAGGCCCAGGCTTTCCCCAGCATGGG  150

seq1  CCACTAGATTCAGAAAATGATCTCTTCAGTGACAAAGGGGGGAGGGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGATTCAGAAAATGATCTCTTCAGTGACAAAGGGGGGAGGGAAAA  200

seq1  AAAAACTCTCTGATAATAAACTGCAAAGACCCCAGGCTGACGATCTGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCTCTGATAATAAACTGCAAAGACCCCAGGCTGACGATCTGCAA  250

seq1  ATAACATAAAAACACGTCCCCGGTGGAAAGTTTAATGAGTCTCGCTCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATAAAAACACGTCCCCGGTGGAAAGTTTAATGAGTCTCGCTCTCG  300

seq1  TTAGAACAGAAGACTAATTTTAAAGTATTGGTCACTGGGAAGGGAAGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACAGAAGACTAATTTTAAAGTATTGGTCACTGGGAAGGGAAGGGC  350

seq1  ATCAGTGGTGCTGGGGCTGCGGGCCAACCTGTAGAAGACAGGTCTTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGGTGCTGGGGCTGCGGGCCAACCTGTAGAAGACAGGTCTTCAGA  400

seq1  GCCGGAAGGATCTGAGAGTTCTCACAGGCAGAGCTGCCGGCCCCGTTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGAAGGATCTGAGAGTTCTCACAGGCAGAGCTGCCGGCCCCGTTAGC  450

seq1  CCAGAGGCAGGAAGCAGCCTGTCTTATGGGATGGAGAAGCCAGGGACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGCAGGAAGCAGCCTGTCTTATGGGATGGAGAAGCCAGGGACAGT  500

seq1  GTCTGTAGGACAGGGAACTCTGTTGCTTGAGAAGACCTTCAAGACAGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAGGACAGGGAACTCTGTTGCTTGAGAAGACCTTCAAGACAGATC  550

seq1  TGTACCAGAGACTCAGGCTACAGTCACAATCCTTAGCAACTCATGGGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAGAGACTCAGGCTACAGTCACAATCCTTAGCAACTCATGGGCCA  600

seq1  TCAGGCTGTGGCCAGCCATGGGCTAGAGCGAGTCTGAATGGTCCTGGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTGTGGCCAGCCATGGGCTAGAGCGAGTCTGAATGGTCCTGGGGT  650

seq1  CCTTAGGCAAGGGCAGTGGCCAAGAC  676
      ||||||||||||||||||||||||||
seq2  CCTTAGGCAAGGGCAGTGGCCAAGAC  676

seq1: chr13_54870434_54871203
seq2: B6Ng01-331N24.g_70_842

seq1  GAATTCTCAGCTCCTCCTGCGCCATGCCTGCCTGGATATTGCCATGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTCCTCCTGCGCCATGCCTGCCTGGATATTGCCATGCTCC  50

seq1  CACCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAAT  100

seq1  TAAATGTTGTTTTTATAAGACTTGCCTTGGTCATGGTGTCTGTTCACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTGTTTTTATAAGACTTGCCTTGGTCATGGTGTCTGTTCACAGC  150

seq1  AGTAAAACCCTGACTAATACACTCACCTTTCTTCTTTGTGCTGCGTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACCCTGACTAATACACTCACCTTTCTTCTTTGTGCTGCGTGGTT  200

seq1  ATTTTCCCTAGCTCGGGAGATGCGTAGCTTCATGACATTGCAACTGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCCTAGCTCGGGAGATGCGTAGCTTCATGACATTGCAACTGTCCA  250

seq1  CTCCTGTGATTGGGGACTCACTACCTTCTGAGGCAAAGCCTACCCCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTGATTGGGGACTCACTACCTTCTGAGGCAAAGCCTACCCCCTCC  300

seq1  TCCTCTACAGACAGACAATGCCAACCTCTGCTACCTCAGCTTCCTCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTACAGACAGACAATGCCAACCTCTGCTACCTCAGCTTCCTCACAT  350

seq1  GCAGGACACATGGCTGGCACTTGTAGCTGGAGACTAGTCTCAGCAGGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACACATGGCTGGCACTTGTAGCTGGAGACTAGTCTCAGCAGGAAC  400

seq1  ACAGGGTCTGTTCTGATGAGGAGGGGAAGAGGTGATGGTGACAGCCCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTCTGTTCTGATGAGGAGGGGAAGAGGTGATGGTGACAGCCCTTG  450

seq1  CTAGTGGCCATGGACAGCAATGCCACCCTTCCTAGAGTGTCCAGCATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGCCATGGACAGCAATGCCACCCTTCCTAGAGTGTCCAGCATCAA  500

seq1  CAGAGCGAGCAACTGACCCCAGCCCTGGTGTCTGGGAAGCCTCCCGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCGAGCAACTGACCCCAGCCCTGGTGTCTGGGAAGCCTCCCGTGGA  550

seq1  CTGCCGGGCAGTGGGCTCAGCATCACTGCAGGCTGCAGGGTGGCTGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGGGCAGTGGGCTCAGCATCACTGCAGGCTGCAGGGTGGCTGTGGA  600

seq1  GCTTTCTGTCTTCCCAGAGGTAGAGCCAG-TCGGTG-TTTGGTTGTGGAT  648
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  GCTTTCTGTCTTCCCAGAGGTAGAGCCAGTTCGGTGTTTTGGTTGTGGAT  650

seq1  GTCTGTTAGATGAGCT-GGTCAGAGTTTCTGTGGCCTGTGCGCAGAATGC  697
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTCTGTTAGATGAGCTGGGTCAGAGTTTCTGTGGCCTGTGCGCAGAATGC  700

seq1  TGGTAAGACGAAGAGTGCAGGAAAGCGGGTCAAGACAGAGAAGGGAAGGG  747
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGTAAGACGAAGAGTGCAGGAAAGCGGGTCAAGACATAGAAGGGAAGGG  750

seq1  ACAAAGATGGACCTTTGTGTCTC  770
      ||||||||||| |||||||||||
seq2  ACAAAGATGGATCTTTGTGTCTC  773