BAC Information

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BAC

Clone NameB6Ng01-333J17
Chromosome10 (Build37)13 (Build37)
Map Location 110,437,076 - 110,437,87332,269,391 - 32,270,628
singlet/doubletsingletsinglet
Overlap geneZdhhc17
Upstream geneNav3, LOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2
Downstream geneEG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333J17.bB6Ng01-333J17.g
ACCGA119357GA119358
length1,0281,198
definitionB6Ng01-333J17.b B6Ng01-333J17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(110,437,076 - 110,437,873)(32,269,391 - 32,270,628)
sequence
gaattcacgcagttgaatccttctcaacagtctgttttgtgggaacactt
cattaccaccattccccagctgaagagttctgaattcacgcagttgaatc
cttctcaacagtctgttttacgggaacctttatgaccatgacccgcagtt
ctggttccggaatgaggaatcttccttgcgccagtgatggttaactcccg
tcccgagttttcttgtcccgggttttttcttcccggattttctcgtcccg
gatttcggcaccaactcttacacgcgttctcatgaccggccaggaagaac
acaacaaaccagaatcttctgcggcaaaactttattgcttacatcttcag
gagcaagagtgtaaaccccccattgcttacatctttaggagccagagcgc
cagagcgccagagcgccagagcgcagagcaagagctctattgtttacatc
tttaggagcaagagagcaagcccaaagccccaagccccaagcgaaagcga
aaccccgtccctctttaaggagaattatccttcacctaggacgtatcact
ccctgattggctgcagcccatggccgagttgtagtcacggggaaggcaga
gcacatggggtggagaactacctttggcacatgcgcagattatttgttta
ccacttagaacacagctgtcagcgccatcttgtaacggcgaatgtggggg
cggcttcccacagggggagaggaggaggaacttggcagtagcattacatg
acccttaaaggtcacttctaagttacccagagccagtcagctaggtgcaa
gtcttaccttgtcataatgtgactgtttattataaggctatatacgtgaa
cagtaatgatagttgaatgaggtagcattggaaaaatattaagttgggca
caaatattagtttttttccctctaaaatttgtttctgtaagcttcataat
atttttactcttttcattcttaaaatactttatcatctgtgtggtctcat
cccactagtctcattacagcactgtatg
gaattcatatgcagaacactgctgcaaatgacatccgctctcaggtgtcc
tcatgcagactggaggacatgggggcttcatgcaggccacaggtcagcaa
aggctctaccctccagtatctagtcttctcggcctggacatactattatg
caaatcttaaaacttacccattctttcagccctacccagctaaggggagg
tccacatataccttcctttatctgcaaagaaatcacctactgttcttttt
catacatttctatttcacatatttatggcttcagtagttccagtaaaata
tcttatttatatctgtatccccatcacattcattcattcattcattcacc
accttacactaagtaaaagctcacacttctgtcagcagcatcactacaag
tttacacaattgggttctttaaagagaaatagcacagaatggtatagtaa
aagagtatctcagcctctcctctcggactcatcccatctctgacaaagtt
ggcctgtggtctgtctcagccttcagtttactgtgtcatgaaggcttaga
tgacagtattctttcctgagtttaataggtaagaaattgagtgcctaatg
aaaattaagtcaaccttgaacgcccttttaaactcaatgaaggaaacaag
ggagacttaattaagtggcaaaataaagtccctttaaggaggatttatgg
ccctgctaagtaaagtatttaagataacaaggtgttgataaattatgtct
tagctggataaccatctaagtacatcaacacaagactatgaatctgtgtt
cataaatgcacatcccaggaatgagctagtctattgattttttttctgaa
aacaaaaaacagtccttcccaaaaccttactacctatttgtattaagaaa
tttaagccatgtctgacctcccttattggaaggccttctagaattagaca
ttagccatcccttagaggtaacctatcatacatagtacttcttcatgcca
aatgtcttatatcagaaaatgccaaagatgtaacatataggactacatac
actcatatattatctcatctataaatgtcagattattaatatgattatat
gtagcagctattcatttcttcgaattctatgggaaaatattggacagagt
gagactgattctgaagacttcaagccttctcttcacttaattttacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_110437076_110437873
seq2: B6Ng01-333J17.b_47_723 (reverse)

seq1  TGGCGCTGACAGCTGTGTTCTAAGTAGTGAAC--ATAATCTGCACACGTG  48
      ||||||||||||||||||||||||| || |||  ||||||||| || |||
seq2  TGGCGCTGACAGCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTG  50

seq1  -CAGGGGCAGTTTTCC-CACCATGTGTTCTGCCTTTCTCGTGATGACAAC  96
       ||  || |||| ||| | ||||||| |||||||| | |||||  |||||
seq2  CCAAAGGTAGTTCTCCACCCCATGTGCTCTGCCTTCCCCGTGACTACAAC  100

seq1  TGGGCTGATGGGCTGCAGCCAATCAGGGAGTAATACGTCCTAGGCGGAGG  146
      | |||  |||||||||||||||||||||||| |||||||||||| | |||
seq2  TCGGC-CATGGGCTGCAGCCAATCAGGGAGTGATACGTCCTAGGTGAAGG  149

seq1  ATAATTCTCCTTAAA-AGGGACGGGGTTTTGCCATTCTTTTTCTCTCTCT  195
      ||||||||||||||| ||||||||||||| ||       |||| ||    
seq2  ATAATTCTCCTTAAAGAGGGACGGGGTTTCGC-------TTTCGCT----  188

seq1  TCTCTTGCTTTCTTGTTCTTT-TTCTTGCTTTCTTGCTC-----------  233
        |   |||   | |  ||||   |||||| ||||||||           
seq2  --TGGGGCT---TGGGGCTTTGGGCTTGCTCTCTTGCTCCTAAAGATGTA  233

seq1  ---------TCTCTTGCTCTG-GCTCTTGCTTCTTGCTCCTAAAGATGTA  273
                ||||||||||| ||||| ||     ||||       ||  
seq2  AACAATAGAGCTCTTGCTCTGCGCTCTGGC-----GCTC-------TG--  269

seq1  AGCAATAAAGCTCTTGCGCTCTGGCTCCTAAAGATGTAAGCAATAGAGCT  323
       ||      ||||| ||||||||||||||||||||||||||||| | |  
seq2  -GC------GCTCTGGCGCTCTGGCTCCTAAAGATGTAAGCAATGGGG--  310

seq1  CTTGCTCTCTTGCACTCTTGCTCCTGAAGATGTAAGCAATAAAGTTTTGC  373
         | |   || ||||||||||||||||||||||||||||||||||||||
seq2  ---GGT---TTACACTCTTGCTCCTGAAGATGTAAGCAATAAAGTTTTGC  354

seq1  CGCAGAAGATTCTGGTTTGCTGTGTTCTTCCTGGCCGGTCGTGAGAACGC  423
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  CGCAGAAGATTCTGGTTTGTTGTGTTCTTCCTGGCCGGTCATGAGAACGC  404

seq1  GTGTAAGAGTTGGTGCCGAAAACCCGGGAAGAAAGAACCCGGGACAAAAA  473
      ||||||||||||||||||||| ||                          
seq2  GTGTAAGAGTTGGTGCCGAAATCC--------------------------  428

seq1  AAAAAAAAAAAAAAAAAAAAAAACCCGGGACAAGAAAACTCGGGACGGGA  523
                                                        
seq2  --------------------------------------------------  428

seq1  CGAGAAGACCTGGGACGAGAAAACCCGGGAAGAAAGAACCCGGGACGAAA  573
                 |||||||||||| |||||||               ||||
seq2  -----------GGGACGAGAAAATCCGGGAA---------------GAAA  452

seq1  AAACCCGGGACAAGAAAACTCGGGACGGGAGTTAACCATCACCGGCGCAA  623
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAACCCGGGACAAGAAAACTCGGGACGGGAGTTAACCATCACTGGCGCAA  502

seq1  GGAAGATCCCTCATTCCGGAACCAGAACTGCGGGTCACGGTCATAAAGGT  673
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  GGAAGATTCCTCATTCCGGAACCAGAACTGCGGGTCATGGTCATAAAGGT  552

seq1  TCCGGTAAAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACT  723
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTAAAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACT  602

seq1  CTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCGCAACACAGACTGTT  773
      ||||||||||||||||||||||||||||||||||| ||| ||||||||||
seq2  CTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCACAAAACAGACTGTT  652

seq1  GAGAAGGATTCAACTGCGTGAATTC  798
      |||||||||||||||||||||||||
seq2  GAGAAGGATTCAACTGCGTGAATTC  677

seq1: chr13_32269391_32270628
seq2: B6Ng01-333J17.g_67_1264

seq1  GAATTCATATGCAGAACACTGCTGCAAATGACATCCGCTCTCAGGTGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGCAGAACACTGCTGCAAATGACATCCGCTCTCAGGTGTCC  50

seq1  TCATGCAGACTGGAGGACATGGGGGCTTCATGCAGGCCACAGGTCAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAGACTGGAGGACATGGGGGCTTCATGCAGGCCACAGGTCAGCAA  100

seq1  AGGCTCTACCCTCCAGTATCTAGTCTTCTCGGCCTGGACATACTATTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTACCCTCCAGTATCTAGTCTTCTCGGCCTGGACATACTATTATG  150

seq1  CAAATCTTAAAACTTACCCATTCTTTCAGCCCTACCCAGCTAAGGGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTAAAACTTACCCATTCTTTCAGCCCTACCCAGCTAAGGGGAGG  200

seq1  TCCACATATACCTTCCTTTATCTGCAAAGAAATCACCTACTGTTCTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATATACCTTCCTTTATCTGCAAAGAAATCACCTACTGTTCTTTTT  250

seq1  CATACATTTCTATTTCACATATTTATGGCTTCAGTAGTTCCAGTAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTTCTATTTCACATATTTATGGCTTCAGTAGTTCCAGTAAAATA  300

seq1  TCTTATTTATATCTGTATCCCCATCACATTCATTCATTCATTCATTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTATATCTGTATCCCCATCACATTCATTCATTCATTCATTCACC  350

seq1  ACCTTACACTAAGTAAAAGCTCACACTTCTGTCAGCAGCATCACTACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACACTAAGTAAAAGCTCACACTTCTGTCAGCAGCATCACTACAAG  400

seq1  TTTACACAATTGGGTTCTTTAAAGAGAAATAGCACAGAATGGTATAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACAATTGGGTTCTTTAAAGAGAAATAGCACAGAATGGTATAGTAA  450

seq1  AAGAGTATCTCAGCCTCTCCTCTCGGACTCATCCCATCTCTGACAAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATCTCAGCCTCTCCTCTCGGACTCATCCCATCTCTGACAAAGTT  500

seq1  GGCCTGTGGTCTGTCTCAGCCTTCAGTTTACTGTGTCATGAAGGCTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTGGTCTGTCTCAGCCTTCAGTTTACTGTGTCATGAAGGCTTAGA  550

seq1  TGACAGTATTCTTTCCTGAGTTTAATAGGTAAGAAATTGAGTGCCTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTATTCTTTCCTGAGTTTAATAGGTAAGAAATTGAGTGCCTAATG  600

seq1  AAAATTAAGTCAACCTTGAACGCCCTTTTAAACTCAATGAAGGAAACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAGTCAACCTTGAACGCCCTTTTAAACTCAATGAAGGAAACAAG  650

seq1  GGAGACTTAATTAAGTGGCAAAATAAAGTCCCTTTAAGGAGGATTTATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTTAATTAAGTGGCAAAATAAAGTCCCTTTAAGGAGGATTTATGG  700

seq1  CCCTGCTAAGTAAAGTATTTAAGATAACAAGGTGTTGATAAATTATGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTAAGTAAAGTATTTAAGATAACAAGGTGTTGATAAATTATGTCT  750

seq1  TAGCTGGATAACCATCTAAGTACATCAACACAAGACTATGAATCTGTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGATAACCATCTAAGTACATCAACACAAGACTATGAATCTGTGTT  800

seq1  CATAAATGCACATCCCAGGAATGAGCTAGTCTATTGA-TTTTTTTCTGAA  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATAAATGCACATCCCAGGAATGAGCTAGTCTATTGATTTTTTTTCTGAA  850

seq1  AAC-AAAAACAGTCCTTCCCAAAACCTTACTACCTATTTGTATTAAGAAA  898
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAACAGTCCTTCCCAAAACCTTACTACCTATTTGTATTAAGAAA  900

seq1  TTTAAGCCATGTCTGACCTCCCTTATTGGAAGGCCTTCTAGAATTAGACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCCATGTCTGACCTCCCTTATTGGAAGGCCTTCTAGAATTAGACA  950

seq1  TTAGCCATCCCTTAGAGGTAACCTATCATACATAGTACTTCTTCATGCCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCATCCCTTAGAGGTAACCTATCATACATAGTACTTCTTCATGCCA  1000

seq1  AATGTCTTATATCAGGAAAAATGCCAAAGGAATGTTAAACAATAATAGGA  1048
      |||||||||||||||  ||||||||||||  ||||  ||||   ||||||
seq2  AATGTCTTATATCAG--AAAATGCCAAAG--ATGT--AACA--TATAGGA  1042

seq1  CTACATACACTCATTAATTATTATTCTCATCTTATAAATGTCAGGAAATA  1098
      ||||||||||||||  ||||    ||||||| ||||||||||||   || 
seq2  CTACATACACTCATATATTA----TCTCATC-TATAAATGTCAG---AT-  1083

seq1  TATAAATATAGATATAATAAAGGTAAGCAGCTATCCATGTCTTTAGAATT  1148
      ||| ||||| |||    || | || ||||||||| ||| || || |||||
seq2  TATTAATAT-GAT----TATATGT-AGCAGCTATTCATTTC-TTCGAATT  1126

seq1  CTATGGGAAAAATAAATTGTAGACAAGGAAGGGGTGGAG-GAAACTGATT  1197
      ||||||||||   | ||||  ||||           ||| || ||||| |
seq2  CTATGGGAAA---ATATTG--GACA-----------GAGTGAGACTGA-T  1159

seq1  TCTTGAAAGACTTCAGAGCC--ATCTTCACCCTAATTTTACAG  1238
      |||   ||||||||| ||||   |||||| | |||||||||||
seq2  TCT--GAAGACTTCA-AGCCTTCTCTTCA-CTTAATTTTACAG  1198